##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547200_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1190739 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.57074304276588 31.0 30.0 31.0 28.0 33.0 2 30.89790037951222 31.0 31.0 33.0 28.0 34.0 3 31.078093520074507 31.0 31.0 34.0 28.0 34.0 4 34.91102752156434 35.0 35.0 37.0 32.0 37.0 5 34.70484631812681 35.0 35.0 37.0 32.0 37.0 6 34.7366307813887 35.0 35.0 37.0 32.0 37.0 7 35.35833041497759 35.0 35.0 37.0 33.0 37.0 8 34.31871803980553 35.0 35.0 37.0 32.0 37.0 9 36.41493811826101 39.0 37.0 39.0 32.0 39.0 10 35.80116633451999 37.0 35.0 39.0 30.0 39.0 11 35.6057255200342 37.0 35.0 39.0 30.0 39.0 12 35.199959856862 37.0 34.0 39.0 30.0 39.0 13 35.01324219665267 37.0 34.0 39.0 28.0 39.0 14 35.89494759136973 38.0 34.0 40.0 27.0 41.0 15 36.079302013287545 38.0 34.0 40.0 30.0 41.0 16 36.16337753277586 38.0 34.0 40.0 30.0 41.0 17 36.07993439368325 38.0 34.0 40.0 30.0 41.0 18 36.011320700842084 38.0 34.0 40.0 30.0 41.0 19 36.00241110772386 38.0 34.0 40.0 29.0 41.0 20 35.88476651894328 38.0 34.0 40.0 29.0 41.0 21 35.69767346160661 38.0 34.0 40.0 29.0 41.0 22 35.652057251841086 37.0 34.0 40.0 29.0 41.0 23 35.53145063695739 37.0 34.0 40.0 29.0 41.0 24 35.43711258302617 37.0 34.0 40.0 28.0 41.0 25 35.24056909196726 37.0 33.0 40.0 27.0 41.0 26 35.06302724610515 37.0 33.0 40.0 27.0 41.0 27 34.854246816472795 37.0 33.0 40.0 26.0 41.0 28 34.85065576923238 37.0 33.0 40.0 26.0 41.0 29 34.66437565243097 36.0 33.0 40.0 25.0 41.0 30 34.7139121167611 37.0 33.0 40.0 25.0 41.0 31 34.68297502643316 37.0 33.0 40.0 25.0 41.0 32 34.48958671883595 37.0 33.0 40.0 25.0 41.0 33 34.34540566824468 37.0 33.0 40.0 24.0 41.0 34 34.227475542499235 37.0 33.0 40.0 24.0 41.0 35 34.04822047484797 36.0 32.0 40.0 23.0 41.0 36 34.01061861583437 36.0 33.0 40.0 23.0 41.0 37 34.03856680599191 36.0 33.0 40.0 23.0 41.0 38 34.04863702289083 36.0 33.0 40.0 23.0 41.0 39 33.94413973171283 36.0 32.0 40.0 23.0 41.0 40 33.84110287812862 36.0 32.0 40.0 23.0 41.0 41 33.85111010893235 36.0 32.0 40.0 23.0 41.0 42 33.69231376481328 36.0 32.0 40.0 23.0 41.0 43 33.73174054095818 36.0 32.0 40.0 23.0 41.0 44 33.42852631852992 35.0 32.0 39.0 22.0 41.0 45 33.34295844849291 35.0 31.0 39.0 22.0 41.0 46 33.27975736076504 35.0 31.0 39.0 22.0 41.0 47 33.19555167001333 35.0 31.0 39.0 22.0 41.0 48 33.20685809400717 35.0 31.0 39.0 22.0 41.0 49 33.18950500487512 35.0 31.0 39.0 22.0 41.0 50 32.61199221659827 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 7.0 13 13.0 14 28.0 15 61.0 16 176.0 17 448.0 18 902.0 19 1871.0 20 3123.0 21 4841.0 22 7048.0 23 9923.0 24 13824.0 25 18532.0 26 23999.0 27 28747.0 28 33777.0 29 39345.0 30 46769.0 31 55820.0 32 66989.0 33 81472.0 34 108789.0 35 120513.0 36 110338.0 37 128350.0 38 147528.0 39 137506.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.64453587226084 23.56796913513373 27.23804292964285 14.549452062962581 2 31.734326330119362 25.40674320736954 28.779858558424642 14.079071904086454 3 29.577850393747074 26.42048341408151 30.096687855189085 13.904978336982326 4 26.5431803275109 28.554872226407298 29.336319714059922 15.565627732021877 5 22.562291148606032 32.928710657835175 29.43810524388636 15.070892949672428 6 21.07640717235263 41.91741431161657 26.464321736333485 10.541856779697314 7 89.02664647752361 3.5035385588277532 6.0059341299814655 1.4638808336671596 8 86.75083288613206 5.86207388856836 5.717037906711715 1.6700553185878684 9 83.77360613870883 5.066769459974016 7.995706867751876 3.16391753356529 10 40.97740982700659 29.72330628290499 15.385655462700054 13.91362842738837 11 35.36845605964027 25.285306015843943 22.957171974714864 16.389065949800923 12 32.695746087093816 22.39600785730542 26.941084486188828 17.96716156941194 13 24.624707849495145 28.58426573749579 27.492758698589697 19.298267714419364 14 20.857215561092733 31.223970996162887 28.45325465950137 19.46555878324301 15 20.418664375652433 23.792115652548542 36.62456676064192 19.164653211157106 16 22.869159404369892 21.950822136505145 34.823500364059626 20.356518095065333 17 23.017386681716147 21.731378580864487 28.570156852173312 26.68107788524605 18 24.551559997614927 23.382957978196732 30.69555964825205 21.369922375936287 19 28.246996193120406 25.041591818190216 26.009142221763128 20.702269766926253 20 30.235341246066515 24.31557209430446 25.153455123246992 20.29563153638203 21 26.466421272839806 26.48011025086102 27.05496334629167 19.998505130007498 22 25.46057532339161 24.03692160918556 26.457519238053006 24.04498382936983 23 23.585605241786823 27.320848649452145 26.039711473295156 23.053834635465876 24 23.59400338781211 24.772599201000386 31.32987161754171 20.303525793645793 25 23.347685764890542 25.615185191717078 29.180534105290917 21.856594938101466 26 22.18143522635943 27.95264117493422 26.468016920584613 23.39790667812174 27 21.920672792274377 27.374176876712696 27.70808716267797 22.997063168334957 28 21.005106912597977 26.969134293913278 30.440423972003938 21.585334821484807 29 22.265836593913527 25.312767953346622 30.474352481946088 21.947042970793767 30 23.294945407851763 26.080022574216517 29.34127462021484 21.28375739771688 31 26.93688541317619 26.144352372770186 25.894339565597495 21.024422648456127 32 27.74159576531885 25.464942359324755 25.770886819025833 21.022575056330563 33 26.675955016170633 26.110087936987032 25.492320315367177 21.72163673147516 34 22.764014616133345 26.428713597186288 28.408744485567368 22.398527301113006 35 22.675498157026855 26.209018097164872 29.090170054058866 22.02531369174941 36 26.896154404953563 27.342515866197374 24.89823546553863 20.86309426331043 37 23.138907854701994 29.5445097540267 26.173325976557415 21.14325641471389 38 23.810003703582396 28.86627548102481 25.365340347464894 21.958380467927903 39 22.83565080172901 28.229108142086552 26.11571469482397 22.819526361360467 40 25.304621751702093 24.93678295579468 27.063361492316957 22.69523380018627 41 21.17584122129199 25.374074419331187 27.52055656193339 25.929527797443434 42 23.35625187383633 26.676122979091137 24.99548599651141 24.972139150561123 43 22.3301663924672 25.92373307668599 27.066720750727068 24.67937978011974 44 22.711610184935573 26.17080653274983 28.035698839124272 23.08188444319032 45 21.758000703764637 28.89541704773254 25.602923898520164 23.743658349982656 46 22.561451334003504 28.298560809715646 26.673015665061783 22.466972191219067 47 22.49132681469239 26.982487346093475 27.33319392410931 23.19299191510482 48 22.587317623761376 26.140405244138304 28.43377096072271 22.838506171377606 49 22.65819797621477 25.934818629439366 28.893905381447993 22.51307801289787 50 21.675027021034836 28.545046395557716 27.380055578930396 22.399871004477053 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 658.0 1 1039.5 2 1421.0 3 5511.5 4 9602.0 5 6988.0 6 4374.0 7 4457.0 8 4540.0 9 4733.0 10 4926.0 11 4952.0 12 4978.0 13 4946.5 14 4915.0 15 4786.5 16 4658.0 17 4492.5 18 4327.0 19 4176.5 20 4026.0 21 4399.5 22 4773.0 23 5217.0 24 5661.0 25 7144.0 26 8627.0 27 9772.5 28 10918.0 29 12723.0 30 14528.0 31 17763.0 32 20998.0 33 23700.5 34 26403.0 35 31332.0 36 36261.0 37 38090.5 38 39920.0 39 45669.5 40 51419.0 41 58673.0 42 65927.0 43 74000.0 44 82073.0 45 82717.5 46 83362.0 47 86178.0 48 88994.0 49 89758.0 50 90522.0 51 85342.5 52 80163.0 53 77154.5 54 74146.0 55 69860.0 56 65574.0 57 63151.0 58 60728.0 59 59133.5 60 57539.0 61 54155.5 62 50772.0 63 44243.0 64 37714.0 65 32292.5 66 26871.0 67 23141.0 68 19411.0 69 16967.5 70 14524.0 71 12477.0 72 10430.0 73 8272.0 74 6114.0 75 4837.0 76 3560.0 77 2941.5 78 2323.0 79 1711.5 80 1100.0 81 791.5 82 483.0 83 377.5 84 272.0 85 190.5 86 109.0 87 94.0 88 79.0 89 45.5 90 12.0 91 7.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1190739.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.772994147984893 #Duplication Level Percentage of deduplicated Percentage of total 1 77.05172458910727 20.62905371516312 2 6.627451054181506 3.548734165793155 3 2.503862657234205 2.011077008084678 4 1.389000938761038 1.4875085601997917 5 0.9943188881085347 1.331044688628032 6 0.8014997210974882 1.2875128405532743 7 0.6694439668677412 1.2546113585147676 8 0.5642737665605617 1.208583859998985 9 0.5295935285386917 1.2760923996339355 >10 8.122574154117833 52.17717436320406 >50 0.708353749372552 11.541542688747597 >100 0.036660265198430006 1.5353900005230707 >500 3.106802135393845E-4 0.04791075574455151 >1k 6.21360427078769E-4 0.22666112743733136 >5k 3.106802135393845E-4 0.43710246777364264 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5255 0.4413225736286458 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1407 0.11816191457573826 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 1318 0.11068756461323599 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014780737004498886 0.0 2 0.0 0.0 0.0 0.06449776147417696 0.0 3 0.0 0.0 0.0 0.10212145566744685 0.0 4 0.0 0.0 0.0 0.168046901965922 0.0 5 0.0 0.0 0.0 0.2880564086672226 0.0 6 0.0 0.0 0.0 0.5189214429022649 0.0 7 0.0 0.0 0.0 0.6396028012855882 0.0 8 0.0 0.0 0.0 0.9672984591921487 0.0 9 0.0 0.0 0.0 1.1313142510659346 0.0 10 0.0 0.0 0.0 1.3646147476483093 0.0 11 0.0 0.0 0.0 1.5148575800406303 0.0 12 0.0 0.0 0.0 1.655610507424381 0.0 13 0.0 0.0 0.0 1.7206961391203277 0.0 14 0.0 0.0 0.0 1.7533649271586804 0.0 15 0.0 0.0 0.0 1.7898128809084106 0.0 16 0.0 0.0 0.0 1.8580898080939652 0.0 17 0.0 0.0 0.0 1.9296420122293803 0.0 18 0.0 0.0 0.0 2.0447805942360167 0.0 19 0.0 0.0 0.0 2.0930699338813965 0.0 20 0.0 0.0 0.0 2.1505132526943354 0.0 21 0.0 0.0 0.0 2.2154309214697765 0.0 22 0.0 0.0 0.0 2.281776275069516 0.0 23 0.0 0.0 0.0 2.3636581988160295 0.0 24 0.0 0.0 0.0 2.4299195709555157 0.0 25 0.0 0.0 0.0 2.4878667785299715 0.0 26 0.0 0.0 0.0 2.5467377821672086 0.0 27 0.0 0.0 0.0 2.607120452088997 0.0 28 0.0 0.0 0.0 2.667419140550532 0.0 29 0.0 0.0 0.0 2.7381315300834186 0.0 30 0.0 0.0 0.0 2.8375655790227747 0.0 31 0.0 0.0 0.0 2.9144086151541186 0.0 32 0.0 0.0 0.0 3.0132547938717047 0.0 33 0.0 0.0 0.0 3.0978241243463094 0.0 34 0.0 0.0 0.0 3.1794541037120645 0.0 35 0.0 0.0 0.0 3.279308059952685 0.0 36 0.0 0.0 0.0 3.3684123892809423 0.0 37 0.0 0.0 0.0 3.460456069718049 0.0 38 0.0 0.0 0.0 3.5692960422057225 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTACGC 20 7.856594E-4 44.000004 12 TATTCGC 20 7.856594E-4 44.000004 12 CGCGTAT 20 7.856594E-4 44.000004 34 CGACGTC 30 2.527795E-6 44.0 18 TAATGCG 60 0.0 44.0 1 ATCGAAT 30 2.527795E-6 44.0 15 CGGTCTA 145 0.0 40.965515 31 CGTTTTT 3695 0.0 40.725307 1 TATAGCG 130 0.0 40.615387 1 TACGGGA 225 0.0 40.08889 4 TCGTACA 55 7.8216544E-11 40.0 34 TACGAAT 195 0.0 39.48718 12 GGCGATA 490 0.0 38.163265 8 GCGATAT 135 0.0 37.481483 9 ATAGCGG 235 0.0 37.44681 2 ATTAGCG 100 0.0 37.399998 1 TAAGGGA 1230 0.0 37.382114 4 GGGCGAT 2525 0.0 37.37822 7 CACGACG 165 0.0 37.333332 26 ATAGGGA 1415 0.0 36.848057 4 >>END_MODULE