##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547199_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2079752 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.707036223549732 31.0 30.0 31.0 28.0 34.0 2 31.04600404278972 31.0 31.0 33.0 28.0 34.0 3 31.17518579138282 31.0 31.0 34.0 28.0 34.0 4 35.032382707168935 35.0 35.0 37.0 32.0 37.0 5 34.86056510583954 35.0 35.0 37.0 32.0 37.0 6 34.881394993249195 35.0 35.0 37.0 32.0 37.0 7 35.43893887348107 35.0 35.0 37.0 35.0 37.0 8 34.39608616796618 36.0 35.0 37.0 32.0 37.0 9 36.51865799383773 39.0 37.0 39.0 32.0 39.0 10 36.032398574445416 38.0 35.0 39.0 31.0 39.0 11 35.83451440364043 37.0 35.0 39.0 30.0 39.0 12 35.48120016232705 37.0 35.0 39.0 30.0 39.0 13 35.33525679984921 37.0 35.0 39.0 30.0 39.0 14 36.248478183937316 38.0 35.0 40.0 30.0 41.0 15 36.39560630305921 38.0 35.0 40.0 30.0 41.0 16 36.4723890156134 38.0 35.0 40.0 30.0 41.0 17 36.3702917463236 38.0 34.0 40.0 30.0 41.0 18 36.257951909650764 38.0 35.0 40.0 30.0 41.0 19 36.14989527597521 38.0 34.0 40.0 30.0 41.0 20 35.957977201127825 38.0 34.0 40.0 30.0 41.0 21 35.78940469825248 37.0 34.0 40.0 29.0 41.0 22 35.74386128730733 37.0 34.0 40.0 29.0 41.0 23 35.61640811019775 37.0 34.0 40.0 29.0 41.0 24 35.47881141597652 37.0 34.0 40.0 29.0 41.0 25 35.2777182087095 37.0 34.0 40.0 27.0 41.0 26 35.076757709573066 37.0 33.0 40.0 27.0 41.0 27 34.891210105820306 36.0 33.0 40.0 27.0 41.0 28 34.85298920255877 36.0 33.0 40.0 26.0 41.0 29 34.64586691105478 36.0 33.0 40.0 25.0 41.0 30 34.614803591966734 36.0 33.0 40.0 25.0 41.0 31 34.522162257807665 36.0 33.0 40.0 25.0 41.0 32 34.220322423058136 36.0 33.0 40.0 24.0 41.0 33 33.95263281391243 36.0 33.0 40.0 23.0 41.0 34 33.684277259980995 36.0 32.0 40.0 22.0 41.0 35 33.429973381441634 36.0 32.0 40.0 21.0 41.0 36 33.326984659709424 36.0 32.0 40.0 20.0 41.0 37 33.321731629540444 36.0 32.0 40.0 20.0 41.0 38 33.28843006281518 36.0 32.0 40.0 20.0 41.0 39 33.16924902584539 36.0 31.0 40.0 18.0 41.0 40 33.04183623816686 35.0 31.0 40.0 18.0 41.0 41 33.010098800241565 35.0 31.0 40.0 18.0 41.0 42 32.83655022329585 35.0 31.0 39.0 18.0 41.0 43 32.83308827206321 35.0 31.0 39.0 18.0 41.0 44 32.51607210859756 35.0 31.0 39.0 18.0 41.0 45 32.42438569598683 35.0 30.0 39.0 18.0 41.0 46 32.3544441837296 35.0 30.0 39.0 18.0 41.0 47 32.266300982040164 35.0 30.0 39.0 18.0 40.0 48 32.231150637191355 35.0 30.0 39.0 18.0 40.0 49 32.21299029884332 35.0 30.0 39.0 18.0 40.0 50 31.686026987833166 35.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 6.0 12 4.0 13 13.0 14 48.0 15 119.0 16 292.0 17 889.0 18 1931.0 19 3757.0 20 6296.0 21 9658.0 22 14175.0 23 20275.0 24 28139.0 25 38414.0 26 50519.0 27 59652.0 28 64807.0 29 70179.0 30 80051.0 31 94430.0 32 113359.0 33 137765.0 34 185119.0 35 205882.0 36 195564.0 37 222659.0 38 250595.0 39 225153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.602662240497903 23.57410883605353 26.34400640076317 18.479222522685397 2 35.6346333601314 24.742709707695916 26.274046136270098 13.348610795902587 3 28.516717377841204 24.900180406125347 32.93647511818717 13.646627097846281 4 25.425387257711495 27.27113617392843 32.219418469125166 15.084058099234909 5 22.38843862152795 30.699044886121037 31.991410514330553 14.921105978020458 6 20.969471360046775 39.66924902584539 29.400380429974344 9.960899184133492 7 84.19249025845389 3.7517454004131263 10.409750777977374 1.6460135631556068 8 82.08348880058777 5.931380279956457 10.110099665729376 1.8750312537264058 9 79.11130750204832 5.190138054921933 12.341615731106401 3.3569387119233447 10 40.423810146594406 27.868082348279987 18.47109655381988 13.237010951305733 11 33.265648981224686 24.619233447064843 25.990262300505062 16.124855271205412 12 29.493276121383705 21.144011401359393 30.994608972608273 18.36810350464863 13 24.343671745477348 24.94407987106155 31.783741523027746 18.92850686043336 14 21.1081898226327 27.26137539475861 32.68562790178829 18.944806880820405 15 20.299631879185593 22.472679434855696 37.95745838926949 19.27023029668922 16 23.696334947628372 20.36252399324535 36.06314599048348 19.8779950686428 17 22.960958806626945 20.75353215191042 31.71522373821494 24.570285303247694 18 24.831999199904605 21.640609072620197 32.52065630902146 21.00673541845374 19 27.814662517454003 23.436303943931776 28.534123299316455 20.21491023929776 20 29.36479926452769 22.896912708822974 28.17239747816086 19.565890548488476 21 26.731360277571557 24.10022925810385 29.8164877350761 19.35192272924849 22 25.6030526716647 21.941318003300395 29.4290376929557 23.02659163207921 23 24.19995268666649 24.431711088629797 29.131165638980033 22.237170585723682 24 23.76518931103324 23.18343725598052 32.85132073439526 20.200052698590987 25 24.207693994283932 23.1303540037466 30.902146025102994 21.759805976866474 26 21.881887840473286 25.38201670199139 29.77826202354896 22.95783343398636 27 22.1912516492351 24.46137808738734 30.606389607991723 22.740980655385833 28 21.933143951778867 25.140064776954173 32.441368009262646 20.485423262004314 29 23.28344918047921 23.686574168458545 31.70560720701314 21.3243694440491 30 23.397597405844543 24.200096934634512 31.51846950982617 20.88383614969477 31 26.48729271566995 24.136147002142565 28.701979851443827 20.674580430743667 32 27.227813700864335 23.796154541503025 28.144990364235735 20.831041393396905 33 26.423438948490013 24.211540606764654 27.506068031188335 21.858952413557002 34 23.346245129226947 25.4676519123434 29.21333889809939 21.97276406033027 35 23.6536856317484 25.399663036746688 29.38013763179456 21.56651369971035 36 26.174947782235574 26.568360073701097 26.244282972200534 21.0124091718628 37 24.504796725763455 27.655797422000315 26.677844281433554 21.16156157080267 38 24.473542999357615 27.968671264650784 25.82812758444276 21.72965815154884 39 24.062532455792805 26.847527974489267 25.64084563928776 23.449093930430166 40 25.398893714250548 24.442673934199846 27.48818128315299 22.670251068396617 41 22.39315072181683 24.593124564851962 28.0003096523047 25.013415061026507 42 23.6959502863803 25.83764795033254 25.96564398062846 24.500757782658702 43 23.21195027099385 24.81050625266859 27.629303878539364 24.348239597798198 44 23.217527859090893 25.122562690166905 28.2946235897357 23.365285861006505 45 22.603127680608072 26.85656751381896 27.232381553185185 23.307923252387784 46 23.45976828006416 26.594084294665905 27.46572668279679 22.480420742473143 47 22.80896953098254 26.00300420434744 28.428197208128665 22.759829056541356 48 23.135162269347497 25.055102723786298 29.56833314741373 22.241401859452473 49 23.70715354523039 24.859310148517707 29.065580896183775 22.367955410068124 50 22.292129061541953 26.42685281706665 28.733714404409756 22.54730371698164 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1532.0 1 2569.0 2 3606.0 3 21169.5 4 38733.0 5 27559.0 6 16385.0 7 16465.5 8 16546.0 9 16860.5 10 17175.0 11 17102.0 12 17029.0 13 16618.5 14 16208.0 15 15346.5 16 14485.0 17 13938.5 18 13392.0 19 13048.0 20 12704.0 21 12356.5 22 12009.0 23 12608.0 24 13207.0 25 13557.5 26 13908.0 27 16058.5 28 18209.0 29 20516.5 30 22824.0 31 26614.5 32 30405.0 33 35971.5 34 41538.0 35 46229.0 36 50920.0 37 55579.0 38 60238.0 39 67249.5 40 74261.0 41 85635.0 42 97009.0 43 106293.5 44 115578.0 45 120241.5 46 124905.0 47 127946.5 48 130988.0 49 135719.0 50 140450.0 51 133474.0 52 126498.0 53 121964.0 54 117430.0 55 114454.0 56 111478.0 57 112920.5 58 114363.0 59 112437.0 60 110511.0 61 104798.0 62 99085.0 63 92187.5 64 85290.0 65 72832.0 66 60374.0 67 52584.0 68 44794.0 69 39750.5 70 34707.0 71 29735.0 72 24763.0 73 20003.5 74 15244.0 75 12511.5 76 9779.0 77 7672.0 78 5565.0 79 4274.5 80 2984.0 81 2217.5 82 1451.0 83 1014.0 84 577.0 85 467.5 86 358.0 87 244.5 88 131.0 89 97.0 90 63.0 91 56.5 92 50.0 93 27.5 94 5.0 95 6.0 96 7.0 97 4.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2079752.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.239447797048783 #Duplication Level Percentage of deduplicated Percentage of total 1 78.31107643661115 20.54839402089155 2 5.246470541199685 2.753289797691268 3 2.1750000489955275 1.7121240073259005 4 1.3669277412576233 1.4346971643626882 5 1.004115200094145 1.3173714187546754 6 0.8029196653271173 1.2640901186144866 7 0.7062241372836575 1.2971651968289242 8 0.5989558723384053 1.2573017075967519 9 0.5633509783678169 1.3303816729468823 >10 8.495644995039724 52.0788878198965 >50 0.6772582064697871 11.1578933271765 >100 0.04888433509390012 2.0956351141419303 >500 0.00242552617530254 0.44272070708899874 >1k 5.597368096852016E-4 0.20052902977292256 >5k 0.0 0.0 >10k+ 1.865789365617339E-4 1.1095188969100938 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22663 1.0896972331316428 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00903953932968931 0.0 2 0.0 0.0 0.0 0.0490443091291654 0.0 3 0.0 0.0 0.0 0.10265647057918444 0.0 4 0.0 0.0 0.0 0.15540314422104173 0.0 5 0.0 0.0 0.0 0.2530109359192827 0.0 6 0.0 0.0 0.0 0.500636614365559 0.0 7 0.0 0.0 0.0 0.637960679927222 0.0 8 0.0 0.0 0.0 0.9211675238201478 0.0 9 0.0 0.0 0.0 1.1070069892948775 0.0 10 0.0 0.0 0.0 1.3612199916143848 0.0 11 0.0 0.0 0.0 1.518209863483723 0.0 12 0.0 0.0 0.0 1.6528413003088829 0.0 13 0.0 0.0 0.0 1.7311679469475207 0.0 14 0.0 0.0 0.0 1.7779042885882548 0.0 15 0.0 0.0 0.0 1.8121391396666526 0.0 16 0.0 0.0 0.0 1.865030061276537 0.0 17 0.0 0.0 0.0 1.9202289503748524 0.0 18 0.0 0.0 0.0 2.008460624151341 0.0 19 0.0 0.0 0.0 2.052360089087545 0.0 20 0.0 0.0 0.0 2.103087291177025 0.0 21 0.0 0.0 0.0 2.1520354349941724 0.0 22 0.0 0.0 0.0 2.20949420892491 0.0 23 0.0 0.0 0.0 2.2730113975127804 0.0 24 0.0 0.0 0.0 2.329123857075267 0.0 25 0.0 0.0 0.0 2.3764852732441177 0.0 26 0.0 0.0 0.0 2.422211879108663 0.0 27 0.0 0.0 0.0 2.4752470486865743 0.0 28 0.0 0.0 0.0 2.527368647800315 0.0 29 0.0 0.0 0.0 2.5878566290596186 0.0 30 0.0 0.0 0.0 2.6717127811392896 0.0 31 0.0 0.0 0.0 2.733354746142809 0.0 32 0.0 0.0 0.0 2.8135085337097885 0.0 33 0.0 0.0 0.0 2.87933368978609 0.0 34 0.0 0.0 0.0 2.9468417388227057 0.0 35 0.0 0.0 0.0 3.0254087987413882 0.0 36 0.0 0.0 0.0 3.101331312579577 0.0 37 0.0 0.0 0.0 3.174416949713235 0.0 38 0.0 0.0 0.0 3.2694282779869908 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 15520 0.0 42.19974 1 TATAGCG 85 0.0 38.82353 1 TGATTCG 115 0.0 38.26087 15 CGTTAGG 270 0.0 37.48148 2 CATATGC 1485 0.0 37.185184 33 GTATACG 60 1.9826984E-10 36.666668 1 GTTTTTT 18130 0.0 36.597904 2 CGAATAT 175 0.0 36.457146 14 TACGGGA 515 0.0 36.310677 4 TATACTA 1050 0.0 36.247616 44 GTTGATC 1565 0.0 35.846645 16 AGGGCGA 2315 0.0 35.637146 6 TCGTTAG 105 0.0 35.619045 1 GCCAGTA 1520 0.0 35.605263 25 TAGCATA 1545 0.0 35.598705 30 ATAGGGA 2230 0.0 35.515697 4 GGGCGAT 4745 0.0 35.468914 7 ATAGGGC 970 0.0 35.381443 4 CACGACG 200 0.0 35.2 26 TAGGGAT 1970 0.0 35.17766 5 >>END_MODULE