##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547198_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 198661 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.60744182300502 31.0 30.0 31.0 27.0 34.0 2 30.943733294406048 31.0 31.0 33.0 28.0 34.0 3 31.032336492819425 31.0 31.0 34.0 28.0 34.0 4 34.863299792108165 35.0 35.0 37.0 32.0 37.0 5 34.68279632137158 35.0 35.0 37.0 32.0 37.0 6 34.72822546951843 35.0 35.0 37.0 31.0 37.0 7 35.45945605831039 35.0 35.0 37.0 35.0 37.0 8 34.463664232033466 37.0 35.0 37.0 33.0 37.0 9 36.57206497500768 39.0 37.0 39.0 32.0 39.0 10 35.94222821791897 38.0 35.0 39.0 30.0 39.0 11 35.67229098816577 37.0 35.0 39.0 30.0 39.0 12 35.56266202223889 37.0 35.0 39.0 30.0 39.0 13 35.56082975521114 37.0 35.0 39.0 30.0 39.0 14 36.52192428307519 38.0 35.0 40.0 30.0 41.0 15 36.611685232632475 38.0 35.0 40.0 30.0 41.0 16 36.594636088613264 38.0 35.0 40.0 30.0 41.0 17 36.50691882151001 38.0 35.0 40.0 30.0 41.0 18 36.35008884481604 38.0 35.0 40.0 30.0 41.0 19 36.19909292714725 38.0 35.0 40.0 30.0 41.0 20 35.96665676705543 38.0 34.0 40.0 30.0 41.0 21 35.85757647449675 37.0 34.0 40.0 30.0 41.0 22 35.78542340972813 37.0 34.0 40.0 29.0 41.0 23 35.64606540790593 37.0 34.0 40.0 29.0 41.0 24 35.512048162447584 37.0 34.0 40.0 28.0 41.0 25 35.34401820186146 37.0 34.0 40.0 27.0 41.0 26 35.20655287147452 37.0 34.0 40.0 27.0 41.0 27 34.98012694992978 37.0 33.0 40.0 27.0 41.0 28 34.99634553334575 37.0 33.0 40.0 27.0 41.0 29 34.82238083972194 37.0 33.0 40.0 26.0 41.0 30 34.756182642793505 37.0 33.0 40.0 25.0 41.0 31 34.60081747298161 37.0 33.0 40.0 25.0 41.0 32 34.204176964779194 37.0 33.0 40.0 23.0 41.0 33 33.812212764458046 37.0 33.0 40.0 21.0 41.0 34 33.49791353109065 37.0 32.0 40.0 18.0 41.0 35 33.15717226833651 37.0 31.0 40.0 17.0 41.0 36 33.06829221638872 37.0 31.0 40.0 16.0 41.0 37 33.058773488505544 37.0 31.0 40.0 15.0 41.0 38 33.05576333553138 37.0 31.0 40.0 15.0 41.0 39 32.95135935085397 37.0 31.0 40.0 15.0 41.0 40 32.90764669462048 37.0 31.0 40.0 15.0 41.0 41 32.920970900176684 37.0 31.0 40.0 15.0 41.0 42 32.76967296047035 37.0 31.0 40.0 15.0 41.0 43 32.824917824837286 37.0 31.0 40.0 15.0 41.0 44 32.43190158108537 36.0 30.0 40.0 12.0 41.0 45 32.39623781215236 36.0 30.0 40.0 12.0 41.0 46 32.35351176124151 36.0 30.0 40.0 12.0 41.0 47 32.32535827364203 36.0 30.0 40.0 12.0 41.0 48 32.31199883218145 36.0 30.0 40.0 12.0 41.0 49 32.325015981999485 36.0 30.0 40.0 12.0 41.0 50 31.786057656006967 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 6.0 15 18.0 16 35.0 17 103.0 18 219.0 19 440.0 20 686.0 21 1063.0 22 1483.0 23 2217.0 24 2965.0 25 4247.0 26 5553.0 27 6480.0 28 6265.0 29 6627.0 30 7342.0 31 8601.0 32 9875.0 33 12024.0 34 15203.0 35 17326.0 36 17806.0 37 20864.0 38 25385.0 39 25828.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.616784371366293 22.46641263257509 26.232124070653022 21.68467892540559 2 36.72990672552741 23.8290353919491 26.989696014819213 12.45136186770428 3 25.776574164028172 24.630400531558784 37.14317354689648 12.449851757516575 4 23.21744076592789 26.70378181928008 36.396675744106794 13.682101670685237 5 20.38598416397783 30.76245463377311 35.725683450702455 13.125877751546605 6 19.05809393892108 38.89943169519936 32.958658216761215 9.083816149118347 7 83.3847609747258 2.4066122691419047 13.167154096677255 1.0414726594550516 8 81.72313639818586 4.735705548648199 12.510256165024842 1.0309018881411047 9 78.69788232214677 4.997457981184027 14.260977242639472 2.043682454029729 10 32.376259054369 37.18696674233997 20.16651481669779 10.270259386593242 11 22.706016782357885 25.315487186715057 36.73796064652851 15.240535384398548 12 22.966762474768576 23.222474466553575 36.692657340897306 17.11810571778054 13 20.56568727631493 26.13749049889007 37.03041865288104 16.266403571913965 14 18.089106568475945 28.762565375186878 36.0971705568783 17.051157499458878 15 18.17065251861211 25.820367359471664 40.218261259129875 15.790718862786354 16 20.727772436462114 24.25891342538294 39.18937285123904 15.823941286915902 17 20.44588520142353 23.958904868091878 36.13391657144583 19.461293359038763 18 20.681965760768346 24.618823020119702 37.12152863420601 17.577682584905947 19 22.60836299021952 25.164979538006953 34.99227326953957 17.234384202233958 20 23.76359728381514 25.598884531941344 34.22211707380915 16.41540111043436 21 23.057369086030977 24.87000468134158 35.339095242649535 16.7335309899779 22 21.52460724550868 24.02534971635097 35.04965745667242 19.400385581467926 23 19.178399383875046 27.627969254156575 34.85082628195771 18.34280508001067 24 18.82805382032709 25.952250315864717 37.74470077166631 17.47499509214189 25 19.18846678512642 27.540886233332156 35.37886147759248 17.891785503948938 26 19.155244360996875 28.580345412536936 34.28151474119228 17.982895485273907 27 19.119001716491912 26.950433149938842 35.98793925330085 17.942625880268398 28 18.106724520665857 26.29202510809872 37.70241768641051 17.898832684824903 29 18.95943340665757 25.36129386240883 37.186463372277395 18.492809358656203 30 19.805598481835894 26.057958029004187 35.985925773050575 18.150517716109352 31 20.62407820357292 26.90160625386966 34.20449912161924 18.26981642093818 32 21.54826563844942 26.584986484513816 34.02580274940728 17.840945127629478 33 21.152113399207696 27.488032376762423 33.21839716904677 18.141457054983114 34 19.905265754224533 28.268255973744218 33.10866249540675 18.7178157766245 35 19.691333477632753 28.28738403612184 33.06134570952527 18.95993677672014 36 21.854818006553877 28.795787799316425 30.804234348966332 18.54515984516337 37 20.663844438515863 29.497989036600035 31.551738891881143 18.286427633002955 38 20.66082421814045 29.47030368315875 31.034777837622883 18.834094261077915 39 20.485148066303903 29.292614051071926 30.523857224115453 19.698380658508714 40 21.407322020930128 28.144426938352268 31.088638434317755 19.35961260639985 41 19.23830042132074 27.989388959081047 31.171191124579057 21.60111949501915 42 20.563673796064652 28.790250728628163 30.18760602231943 20.458469452987753 43 20.581291748254564 29.13757607180071 29.978204076290766 20.302928103653965 44 20.522397450934 29.637925913994188 30.63912896844373 19.200547666628076 45 20.27775960052552 29.55738670398317 29.939444581472962 20.22540911401835 46 20.50528286880666 29.909242377718826 29.9485052425992 19.63696951087531 47 20.49672557774299 28.535042106905735 30.697016525639153 20.271215789712123 48 20.56568727631493 28.209865046486225 31.092162024755737 20.13228565244311 49 20.48716154655418 27.69944780304136 31.360961638167534 20.452429012236927 50 19.96617353179537 29.027338028098114 30.99199138230453 20.014497057801982 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 88.0 1 156.0 2 224.0 3 2432.5 4 4641.0 5 3464.0 6 2287.0 7 2307.0 8 2327.0 9 2336.0 10 2345.0 11 2337.0 12 2329.0 13 2283.0 14 2237.0 15 2130.5 16 2024.0 17 1944.5 18 1865.0 19 1772.5 20 1680.0 21 1701.5 22 1723.0 23 1783.5 24 1844.0 25 2084.0 26 2324.0 27 2649.0 28 2974.0 29 3435.0 30 3896.0 31 4672.0 32 5448.0 33 6082.0 34 6716.0 35 7550.5 36 8385.0 37 9153.0 38 9921.0 39 10734.0 40 11547.0 41 12432.5 42 13318.0 43 14114.5 44 14911.0 45 15305.0 46 15699.0 47 15192.5 48 14686.0 49 13619.0 50 12552.0 51 12131.0 52 11710.0 53 10746.5 54 9783.0 55 8742.0 56 7701.0 57 7063.5 58 6426.0 59 5954.5 60 5483.0 61 4752.5 62 4022.0 63 3187.0 64 2352.0 65 1819.5 66 1287.0 67 1031.0 68 775.0 69 614.0 70 453.0 71 359.0 72 265.0 73 210.5 74 156.0 75 144.5 76 133.0 77 103.5 78 74.0 79 52.5 80 31.0 81 20.5 82 10.0 83 6.0 84 2.0 85 4.5 86 7.0 87 3.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 198661.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.67060658967414 #Duplication Level Percentage of deduplicated Percentage of total 1 68.13310290068408 38.61144270218454 2 15.610663441459527 17.69331532989523 3 7.587687386487863 12.899965404152594 4 3.9466029734439627 8.94625537894724 5 2.029781615063491 5.7514477685108245 6 1.0638838729792874 3.617456665362484 7 0.555647471873757 2.2042215496773294 8 0.3416985334297061 1.5491410528210792 9 0.1842188467167948 0.9395814409821867 >10 0.5080865040133107 4.563752608637476 >50 0.03169350059341044 1.2505275953667163 >100 0.005942531361264457 0.5107630663302118 >500 0.0 0.0 >1k 9.904218935440762E-4 1.4621294371320899 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2605 1.3112790129919814 No Hit AAGATTGGGGTGCTGTTTTTTAAACTTCCTTAAACCTGTTTAGTGCTGTC 229 0.11527174432827783 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01258425156422247 0.0 2 0.0 0.0 0.0 0.04631004575633869 0.0 3 0.0 0.0 0.0 0.12282229526681131 0.0 4 0.0 0.0 0.0 0.17416604164883898 0.0 5 0.0 0.0 0.0 0.27786027453803214 0.0 6 0.0 0.0 0.0 0.547163258012393 0.0 7 0.0 0.0 0.0 0.7052214576590272 0.0 8 0.0 0.0 0.0 1.025364817452847 0.0 9 0.0 0.0 0.0 1.2327532832312331 0.0 10 0.0 0.0 0.0 1.4502091502609973 0.0 11 0.0 0.0 0.0 1.59064939771772 0.0 12 0.0 0.0 0.0 1.7295795349867362 0.0 13 0.0 0.0 0.0 1.8171659258737245 0.0 14 0.0 0.0 0.0 1.8725366327563036 0.0 15 0.0 0.0 0.0 1.914819718012091 0.0 16 0.0 0.0 0.0 1.973714015332652 0.0 17 0.0 0.0 0.0 2.0321049425906446 0.0 18 0.0 0.0 0.0 2.142342986293233 0.0 19 0.0 0.0 0.0 2.1911698823624164 0.0 20 0.0 0.0 0.0 2.251574289870684 0.0 21 0.0 0.0 0.0 2.307448366815832 0.0 22 0.0 0.0 0.0 2.371879734824651 0.0 23 0.0 0.0 0.0 2.451412204710537 0.0 24 0.0 0.0 0.0 2.5128233523439425 0.0 25 0.0 0.0 0.0 2.584805271291295 0.0 26 0.0 0.0 0.0 2.6522568596755276 0.0 27 0.0 0.0 0.0 2.709641046808382 0.0 28 0.0 0.0 0.0 2.7760858950674767 0.0 29 0.0 0.0 0.0 2.8666925063298785 0.0 30 0.0 0.0 0.0 2.972400219469347 0.0 31 0.0 0.0 0.0 3.046898988729544 0.0 32 0.0 0.0 0.0 3.1576404024947022 0.0 33 0.0 0.0 0.0 3.247743643694535 0.0 34 0.0 0.0 0.0 3.3443906957077636 0.0 35 0.0 0.0 0.0 3.457648959785766 0.0 36 0.0 0.0 0.0 3.5537926417364254 0.0 37 0.0 0.0 0.0 3.6433925128736893 0.0 38 0.0 0.0 0.0 3.7465833757003137 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 30 2.5171157E-6 44.0 13 CATGCGC 25 4.4295128E-5 44.0 36 ACGTTAT 25 4.4295128E-5 44.0 13 TTAGCGG 50 2.7284841E-11 44.0 2 CGCGCAT 25 4.4295128E-5 44.0 32 CGACCAA 20 7.8407465E-4 44.0 29 TGACGTT 25 4.4295128E-5 44.0 11 ACGGGCG 25 4.4295128E-5 44.0 5 CGTTATG 25 4.4295128E-5 44.0 14 TGCGAAG 25 4.4295128E-5 44.0 1 CAAGGCG 20 7.8407465E-4 44.0 1 GCGGGTG 25 4.4295128E-5 44.0 5 AGCGACT 30 2.5171157E-6 44.0 19 ATGACGT 25 4.4295128E-5 44.0 10 GGGCCGA 50 2.7284841E-11 44.0 7 ATGCGCT 25 4.4295128E-5 44.0 37 TTTGCGG 20 7.8407465E-4 44.0 2 ATACATC 30 2.5171157E-6 44.0 23 CGCTTAA 25 4.4295128E-5 44.0 40 CGTTTTT 2170 0.0 43.39171 1 >>END_MODULE