##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547197_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4380287 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.56881386995875 31.0 30.0 31.0 28.0 33.0 2 30.895522827613807 31.0 31.0 33.0 28.0 34.0 3 31.07136609998386 31.0 31.0 34.0 28.0 34.0 4 34.904950292069906 35.0 35.0 37.0 32.0 37.0 5 34.70610966815645 35.0 35.0 37.0 32.0 37.0 6 34.7336941620492 35.0 35.0 37.0 32.0 37.0 7 35.36451036199226 35.0 35.0 37.0 33.0 37.0 8 34.32100453691733 35.0 35.0 37.0 32.0 37.0 9 36.425523943979016 39.0 37.0 39.0 32.0 39.0 10 35.81123497158976 37.0 35.0 39.0 30.0 39.0 11 35.62059632165655 37.0 35.0 39.0 30.0 39.0 12 35.25242501233367 37.0 34.0 39.0 30.0 39.0 13 35.08654592724175 37.0 34.0 39.0 29.0 39.0 14 35.969141291426794 38.0 34.0 40.0 28.0 41.0 15 36.144766541553096 38.0 34.0 40.0 30.0 41.0 16 36.22031204804617 38.0 34.0 40.0 30.0 41.0 17 36.13922968974408 38.0 34.0 40.0 30.0 41.0 18 36.06117544352687 38.0 34.0 40.0 30.0 41.0 19 36.02564010075139 38.0 34.0 40.0 29.0 41.0 20 35.89397909315075 38.0 34.0 40.0 29.0 41.0 21 35.71269576628198 38.0 34.0 40.0 29.0 41.0 22 35.675625135978535 37.0 34.0 40.0 29.0 41.0 23 35.551307254524644 37.0 34.0 40.0 29.0 41.0 24 35.453061865580956 37.0 34.0 40.0 28.0 41.0 25 35.24371393929211 37.0 33.0 40.0 27.0 41.0 26 35.05266869499647 37.0 33.0 40.0 27.0 41.0 27 34.836542217439174 37.0 33.0 40.0 26.0 41.0 28 34.84170352307965 37.0 33.0 40.0 26.0 41.0 29 34.645412960383645 36.0 33.0 40.0 25.0 41.0 30 34.659080329667894 37.0 33.0 40.0 25.0 41.0 31 34.640581085212 37.0 33.0 40.0 25.0 41.0 32 34.41342405189432 37.0 33.0 40.0 24.0 41.0 33 34.26978049611818 37.0 33.0 40.0 24.0 41.0 34 34.13895116918138 37.0 33.0 40.0 23.0 41.0 35 33.94571337448893 36.0 32.0 40.0 23.0 41.0 36 33.882946026139386 36.0 32.0 40.0 23.0 41.0 37 33.89664626998185 36.0 32.0 40.0 23.0 41.0 38 33.891800240486525 36.0 32.0 40.0 23.0 41.0 39 33.78299093187273 36.0 32.0 40.0 23.0 41.0 40 33.66953055815749 36.0 32.0 40.0 22.0 41.0 41 33.668827636180005 36.0 32.0 40.0 22.0 41.0 42 33.51493475199228 36.0 32.0 40.0 22.0 41.0 43 33.549823561789445 36.0 32.0 40.0 22.0 41.0 44 33.244047022489625 35.0 31.0 39.0 21.0 41.0 45 33.15648175564752 35.0 31.0 39.0 21.0 41.0 46 33.107571718474155 35.0 31.0 39.0 21.0 41.0 47 33.028120303532624 35.0 31.0 39.0 21.0 41.0 48 33.0155033220426 35.0 31.0 39.0 21.0 41.0 49 33.00876129806106 35.0 31.0 39.0 21.0 41.0 50 32.44264565312729 35.0 30.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 7.0 12 8.0 13 18.0 14 69.0 15 242.0 16 679.0 17 1805.0 18 3813.0 19 7442.0 20 12089.0 21 18829.0 22 27525.0 23 38441.0 24 52063.0 25 70605.0 26 91004.0 27 110509.0 28 128086.0 29 146451.0 30 172467.0 31 205718.0 32 244265.0 33 296478.0 34 391540.0 35 433305.0 36 409521.0 37 473047.0 38 541430.0 39 502826.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.61560555278684 23.56256564923714 27.808269184188163 15.013559613787864 2 31.75664060368647 25.605057385509216 28.948902206636234 13.689399804168085 3 29.00465197828361 26.06217355164171 31.154396960747093 13.778777509327586 4 25.62192842615107 28.988625631151564 30.298996389962575 15.090449552734785 5 22.56626106919478 32.59610614555621 30.112798544935526 14.724834240313477 6 20.90232900264298 41.633390688783635 27.289673028274176 10.174607280299213 7 88.13748962111386 3.4055074473430618 6.937833068929045 1.519169862614025 8 86.0369651577625 5.674125919146394 6.533818446142912 1.7550904769481999 9 82.89655449517349 5.001635737566968 8.92587631814993 3.1759334491096127 10 39.77116111341562 29.103115846062146 16.073786945923864 15.051936094598368 11 34.11575542881094 25.088538719038272 23.598385219963898 17.197320632186887 12 31.540764338044514 22.0188311861757 27.624925033451003 18.81547944232878 13 24.932909647244575 26.46328882102931 28.6440363382582 19.959765193467916 14 21.286664549605998 29.441632477506612 29.4522253907107 19.81947758217669 15 20.338918431600487 23.389038206857222 36.41966839159169 19.8523749699506 16 23.25571360963334 21.10304644421701 35.04500960781793 20.59623033833171 17 23.196059984197383 21.771678431116502 29.290318191479237 25.741943393206885 18 24.591470832847254 23.32269552200575 31.001050844385308 21.084782800761683 19 28.060764054958042 24.2986133100411 26.631359999926946 21.00926263507391 20 29.062570557591314 24.43677777278064 25.88061010614145 20.620041563486595 21 26.274145963495087 25.98560322645525 27.864201592270092 19.876049217779563 22 25.76422503822238 22.76467272578258 27.421171261152523 24.049930974842514 23 23.65525363977292 26.613256163351856 27.008321600844877 22.72316859603035 24 23.76558887579741 24.146614137384148 31.48042582597898 20.60737116083946 25 24.26936865095826 24.137527974765124 29.52628446492205 22.06681890935457 26 21.947671465362887 27.110757811074937 27.572531206288538 23.36903951727364 27 21.72688684554231 26.803882941916818 28.674742088817467 22.7944881237234 28 21.6367785946446 26.296633074499454 31.123759698850783 20.942828632005163 29 22.67876511287959 24.987974532262385 30.225005804414184 22.10825455044384 30 23.29429555643272 25.40303865933899 29.898292052552723 21.404373731675573 31 26.843378070888964 25.23889416378425 26.58382886783446 21.333898897492336 32 26.916113030949802 25.352151582761586 26.906775743233265 20.82495964305535 33 26.387677337124256 25.318272524151958 25.94291195987843 22.35113817884536 34 22.45215895670763 26.994601038699063 28.012821990887808 22.540418013705494 35 22.866172924285554 25.888349325055643 28.39010320556621 22.855374545092594 36 26.234491027642708 26.942435507079786 25.411348617111162 21.41172484816634 37 23.145903453358194 29.08366506578222 26.306107339541906 21.464324141317682 38 23.62406846857295 29.148227045396798 25.036418846527635 22.191285639502617 39 23.31641739456798 27.66163495679621 25.682015813119097 23.339931835516715 40 24.45634270083216 25.38342807217883 27.394734637250938 22.76549458973807 41 21.772363317746073 25.243756858854226 27.572576865397174 25.411302958002523 42 23.634775529548634 26.190703942458565 25.575401794448627 24.599118733544174 43 22.548248550836966 25.701375275181743 27.396127240064406 24.354248933916885 44 22.575347231813804 26.13582169387531 28.169889324603613 23.11894174970727 45 22.135079276768852 27.994352881443614 26.62460245184847 23.24596538993906 46 23.451865140343546 27.157124635897144 26.818356879355164 22.572653344404145 47 22.76035794001626 26.81819707247493 27.311406763986014 23.110038223522796 48 22.751500072940427 25.90953515146382 28.562329363349935 22.77663541224582 49 22.861447206541488 25.17182093319456 28.87968299794055 23.087048862323407 50 22.10750117515131 27.554518687930724 27.521164709070433 22.816815427847537 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2391.0 1 4008.0 2 5625.0 3 25966.0 4 46307.0 5 33104.5 6 19902.0 7 20025.5 8 20149.0 9 20749.0 10 21349.0 11 21555.0 12 21761.0 13 21509.5 14 21258.0 15 20469.5 16 19681.0 17 19156.0 18 18631.0 19 18077.5 20 17524.0 21 18864.0 22 20204.0 23 21696.5 24 23189.0 25 24576.0 26 25963.0 27 32786.0 28 39609.0 29 46638.5 30 53668.0 31 58783.5 32 63899.0 33 75914.5 34 87930.0 35 102511.0 36 117092.0 37 124612.0 38 132132.0 39 154260.5 40 176389.0 41 209873.5 42 243358.0 43 266769.5 44 290181.0 45 310347.0 46 330513.0 47 328893.5 48 327274.0 49 325873.5 50 324473.0 51 301068.0 52 277663.0 53 268288.5 54 258914.0 55 255919.0 56 252924.0 57 244362.5 58 235801.0 59 230458.0 60 225115.0 61 207503.5 62 189892.0 63 170103.5 64 150315.0 65 127131.5 66 103948.0 67 87600.0 68 71252.0 69 63911.5 70 56571.0 71 46928.5 72 37286.0 73 30390.0 74 23494.0 75 18519.0 76 13544.0 77 10149.0 78 6754.0 79 4991.0 80 3228.0 81 2560.0 82 1892.0 83 1334.5 84 777.0 85 533.0 86 289.0 87 197.5 88 106.0 89 71.0 90 36.0 91 28.5 92 21.0 93 12.5 94 4.0 95 5.0 96 6.0 97 3.5 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4380287.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.809656266182184 #Duplication Level Percentage of deduplicated Percentage of total 1 82.19761183336055 17.10504048153302 2 6.159112288303106 2.5633801924881285 3 1.934376533164216 1.207611322335495 4 1.0771693067277228 0.8966209205394269 5 0.6580838730918392 0.6847249596679517 6 0.4899895778644789 0.611790881362291 7 0.3727511320642559 0.5429776051761211 8 0.3272180477819978 0.5447436078747642 9 0.2711932812216329 0.5079095067528233 >10 3.784117786311519 19.465011990162186 >50 1.766154001782792 26.866278222492223 >100 0.9554705909450253 27.104376293019783 >500 0.005063810535672921 0.7023672094206043 >1k 0.0015754077222089591 0.5817700523718775 >5k 0.0 0.0 >10k+ 1.1252912301492567E-4 0.6153967548032901 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26280 0.5999606875074625 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01538711961111224 0.0 2 0.0 0.0 0.0 0.06310088813815168 0.0 3 0.0 0.0 0.0 0.10599762070384885 0.0 4 0.0 0.0 0.0 0.1754222953884072 0.0 5 0.0 0.0 0.0 0.2957340466503679 0.0 6 0.0 0.0 0.0 0.5553973974764668 0.0 7 0.0 0.0 0.0 0.6941097695196684 0.0 8 0.0 0.0 0.0 1.0703636542537054 0.0 9 0.0 0.0 0.0 1.2540274187513285 0.0 10 0.0 0.0 0.0 1.5196721128090465 0.0 11 0.0 0.0 0.0 1.689912099367005 0.0 12 0.0 0.0 0.0 1.8454270233891068 0.0 13 0.0 0.0 0.0 1.924965190637052 0.0 14 0.0 0.0 0.0 1.9657616042053865 0.0 15 0.0 0.0 0.0 2.0053023922861675 2.2829554319157627E-5 16 0.0 0.0 0.0 2.0792244891716 2.2829554319157627E-5 17 0.0 0.0 0.0 2.158054940235651 2.2829554319157627E-5 18 0.0 0.0 0.0 2.2791428963444633 2.2829554319157627E-5 19 0.0 0.0 0.0 2.3319019963760366 2.2829554319157627E-5 20 2.2829554319157627E-5 0.0 0.0 2.393907065906869 2.2829554319157627E-5 21 2.2829554319157627E-5 0.0 0.0 2.4716188688092813 2.2829554319157627E-5 22 2.2829554319157627E-5 0.0 0.0 2.554284684998951 2.2829554319157627E-5 23 4.5659108638315254E-5 0.0 0.0 2.647885857707497 2.2829554319157627E-5 24 4.5659108638315254E-5 0.0 0.0 2.7229722618632066 2.2829554319157627E-5 25 4.5659108638315254E-5 0.0 0.0 2.7900226628985725 2.2829554319157627E-5 26 4.5659108638315254E-5 0.0 0.0 2.857073063933939 2.2829554319157627E-5 27 4.5659108638315254E-5 0.0 0.0 2.927251113911029 2.2829554319157627E-5 28 4.5659108638315254E-5 0.0 0.0 3.003296359348143 2.2829554319157627E-5 29 4.5659108638315254E-5 0.0 0.0 3.0856425617773446 2.2829554319157627E-5 30 4.5659108638315254E-5 0.0 0.0 3.1992424240694732 2.2829554319157627E-5 31 4.5659108638315254E-5 0.0 0.0 3.2935741425162326 2.2829554319157627E-5 32 4.5659108638315254E-5 0.0 0.0 3.3905769188183332 2.2829554319157627E-5 33 4.5659108638315254E-5 0.0 0.0 3.4852282510255606 2.2829554319157627E-5 34 4.5659108638315254E-5 0.0 0.0 3.5870480632890036 2.2829554319157627E-5 35 4.5659108638315254E-5 0.0 0.0 3.700647925581132 2.2829554319157627E-5 36 4.5659108638315254E-5 0.0 0.0 3.803015647148235 2.2829554319157627E-5 37 4.5659108638315254E-5 0.0 0.0 3.912072428130851 2.2829554319157627E-5 38 4.5659108638315254E-5 0.0 0.0 4.03811439752692 2.2829554319157627E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 18010 0.0 41.129375 1 CGGTCTA 605 0.0 41.090904 31 GGGCGAT 8670 0.0 37.326412 7 TAGGGTA 1845 0.0 36.845528 5 GCGCGAC 2330 0.0 36.635193 9 TCACGAC 700 0.0 36.45714 25 TACGAAA 445 0.0 36.08989 20 AGGGCGA 4570 0.0 35.91247 6 TAGCATA 2745 0.0 35.584698 30 GCGATAC 285 0.0 35.508774 9 ATAGGGA 5275 0.0 35.450233 4 ATAGGGC 2855 0.0 35.446583 4 TGGGCGA 2630 0.0 35.384033 6 TAGGGAC 3725 0.0 35.377182 5 GGCGATA 1985 0.0 35.244335 8 ACCCGCT 2315 0.0 35.161983 34 TTAGGGA 4655 0.0 35.11493 4 TAACGGG 1055 0.0 35.033176 3 CGACGGT 735 0.0 34.72109 28 CACGACG 705 0.0 34.6383 26 >>END_MODULE