##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547195_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3192580 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.522067105601113 31.0 30.0 31.0 27.0 33.0 2 30.848192371060396 31.0 31.0 33.0 28.0 34.0 3 31.039793521227345 31.0 31.0 34.0 28.0 34.0 4 34.87450244003283 35.0 35.0 37.0 32.0 37.0 5 34.64693977911282 35.0 35.0 37.0 31.0 37.0 6 34.67696001353138 35.0 35.0 37.0 31.0 37.0 7 35.32315775955497 35.0 35.0 37.0 33.0 37.0 8 34.29184765925991 35.0 35.0 37.0 32.0 37.0 9 36.390019983837526 39.0 37.0 39.0 32.0 39.0 10 35.797614155322655 37.0 35.0 39.0 30.0 39.0 11 35.54013399820835 37.0 35.0 39.0 30.0 39.0 12 34.94009233911132 37.0 33.0 39.0 29.0 39.0 13 34.61301110700437 37.0 33.0 39.0 27.0 39.0 14 35.4459242994694 38.0 33.0 40.0 27.0 41.0 15 35.74359076358306 38.0 33.0 40.0 29.0 41.0 16 35.89695168171197 38.0 34.0 40.0 29.0 41.0 17 35.81937931077687 38.0 34.0 40.0 29.0 41.0 18 35.77207368335328 37.0 34.0 40.0 29.0 41.0 19 35.750848530029 37.0 34.0 40.0 29.0 41.0 20 35.61022746493432 37.0 34.0 40.0 29.0 41.0 21 35.41696308314905 37.0 34.0 40.0 28.0 41.0 22 35.36601839264795 37.0 33.0 40.0 28.0 41.0 23 35.28807829404432 37.0 34.0 40.0 27.0 41.0 24 35.19503066485413 37.0 33.0 40.0 27.0 41.0 25 34.96870744037737 36.0 33.0 40.0 27.0 41.0 26 34.77092570898772 36.0 33.0 40.0 26.0 41.0 27 34.54299062200477 36.0 33.0 40.0 25.0 41.0 28 34.572667247179396 36.0 33.0 40.0 25.0 41.0 29 34.42644475627862 36.0 33.0 40.0 25.0 41.0 30 34.43437815183958 36.0 33.0 39.0 25.0 41.0 31 34.391312042298075 36.0 33.0 40.0 25.0 41.0 32 34.17867618039329 36.0 33.0 40.0 24.0 41.0 33 34.05136691954469 36.0 32.0 40.0 24.0 41.0 34 33.961844965513784 36.0 32.0 40.0 23.0 41.0 35 33.77142373879433 36.0 32.0 40.0 23.0 41.0 36 33.68095709426232 36.0 32.0 40.0 23.0 41.0 37 33.66967436994531 36.0 32.0 40.0 23.0 41.0 38 33.6997121450363 35.0 32.0 40.0 23.0 41.0 39 33.61479242493532 35.0 32.0 40.0 23.0 41.0 40 33.48177242230422 35.0 32.0 39.0 23.0 41.0 41 33.515929123154315 35.0 32.0 39.0 23.0 41.0 42 33.35262483633926 35.0 32.0 39.0 22.0 41.0 43 33.378995984438916 35.0 32.0 39.0 23.0 41.0 44 32.960234355912775 35.0 31.0 39.0 21.0 41.0 45 32.903152309417464 35.0 31.0 39.0 21.0 41.0 46 32.8610001942003 35.0 31.0 39.0 21.0 40.0 47 32.809916431224906 35.0 31.0 39.0 21.0 40.0 48 32.838002493281294 35.0 31.0 39.0 21.0 40.0 49 32.84203089664159 35.0 31.0 39.0 21.0 40.0 50 32.251451803870225 35.0 30.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 9.0 13 24.0 14 80.0 15 190.0 16 631.0 17 1429.0 18 3157.0 19 5755.0 20 9530.0 21 14528.0 22 21490.0 23 29601.0 24 40137.0 25 53199.0 26 68037.0 27 82411.0 28 96190.0 29 111965.0 30 133004.0 31 158282.0 32 188165.0 33 227677.0 34 311401.0 35 341202.0 36 282499.0 37 321036.0 38 362320.0 39 328626.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.434463662617695 23.902361099800164 28.88867311077561 13.774502126806532 2 29.407407175387927 26.30377312393112 30.65107217360254 13.637747527078414 3 28.358662899598443 26.08229081181991 31.38439757186977 14.174648716711877 4 25.779808180217877 29.105738932148924 29.791109384886205 15.323343502746994 5 22.384497804283683 33.3458519441956 29.31215505954432 14.957495191976394 6 21.008901891260358 42.5789486872686 26.085767623677402 10.326381797793633 7 88.78580959600073 3.9054933627348416 5.833181940624824 1.4755151006396081 8 86.63626283444738 6.0998941295128075 5.399645427835794 1.864197608204023 9 83.79270057445703 5.597134605867355 7.442914508015461 3.1672503116601622 10 44.6004172174229 29.544725582444293 13.302250844144861 12.552606355987947 11 38.76018768519505 23.44671081069229 21.854299657330433 15.938801846782228 12 35.348088379930964 20.77589285154953 25.921668368529527 17.954350399989977 13 24.18683321952778 30.765086544424886 26.86319528406493 18.184884951982408 14 20.35667078037199 33.484423256425835 28.09182542019307 18.067080543009105 15 19.21164074197044 22.980786699158674 39.28405866102024 18.52351389785064 16 21.518395780215375 19.709545258067145 37.19747038445395 21.57458857726353 17 21.370114452887634 20.473316252059462 28.239730875968654 29.91683841908425 18 24.018442764159396 21.85868482543899 32.26760175156143 21.855270658840187 19 28.698043588570997 24.56029292922965 25.17239975192477 21.569263730274574 20 29.99724360861748 24.00074547857845 24.65491859248633 21.34709232031774 21 26.19204530505109 26.02036597360129 26.732204048136616 21.05538467321101 22 25.304518602509567 23.074504006164293 25.29267864861648 26.32829874270966 23 22.483352022502174 27.003144791986415 25.630493206121695 24.88300997938971 24 22.99149903839528 23.220216877885598 33.33658044590895 20.451703637810173 25 22.5447443760219 24.565837034624035 29.961567133791476 22.927851455562585 26 20.97190986600179 28.699641042667682 25.889030188750162 24.43941890258036 27 21.252717238095833 27.804315005418818 27.504901991492776 23.438065764992576 28 20.02634233128066 26.287485356670782 32.031804997838734 21.654367314209825 29 20.943719499589676 24.01036152578792 31.247924875805776 23.79799409881663 30 22.64622969510553 26.554103577670723 29.596971728194752 21.202694999029 31 28.306667334882757 25.48117823202551 24.90725369450413 21.3049007385876 32 28.826998853591768 24.16033427510039 25.102706901628153 21.909959969679697 33 27.68187484730218 24.927738694096938 24.67640591621823 22.71398054238265 34 21.978525205319833 25.59779238108364 27.649299312781512 24.774383100815015 35 22.129061761960546 25.049427109109246 29.174742684599913 23.64676844433029 36 28.485832774746445 24.94061229475847 25.393161643561008 21.18039328693408 37 22.601594948286337 29.532384466481652 26.370866195991955 21.49515438924005 38 23.173671450676256 29.311810510621505 24.64129324872047 22.87322478998177 39 22.7707058241297 28.326557204517975 24.923165590212303 23.97957138114002 40 25.055002537132975 23.76316333498299 26.852921461639173 24.328912666244857 41 21.176916475076585 23.82941069605147 27.002455694140785 27.991217134731155 42 22.76337632886255 24.325122628093894 25.037900381509626 27.87360066153393 43 22.279692286489297 24.621967186413496 26.828615101266063 26.269725425831147 44 21.6457849137688 25.885240150599202 28.81089902210751 23.658075913524485 45 21.076527448020098 29.687713385412422 25.426113049633837 23.80964611693364 46 23.07531839452731 28.202550914934005 27.005431343928738 21.716699346609953 47 22.172756829899328 26.301423926730106 27.13382280162126 24.391996441749306 48 22.40351064029719 24.893690995996966 29.355505578560287 23.347292785145555 49 22.508535416497004 23.35919538429734 30.50795908011702 23.624310119088637 50 21.69333266511724 28.021975956749714 27.270765337125457 23.013926041007586 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1940.0 1 3155.5 2 4371.0 3 13178.0 4 21985.0 5 16193.0 6 10401.0 7 10803.0 8 11205.0 9 11880.5 10 12556.0 11 12464.0 12 12372.0 13 12390.5 14 12409.0 15 12139.5 16 11870.0 17 11219.0 18 10568.0 19 10662.5 20 10757.0 21 11589.5 22 12422.0 23 12334.5 24 12247.0 25 15427.0 26 18607.0 27 21346.5 28 24086.0 29 28443.5 30 32801.0 31 39088.0 32 45375.0 33 53176.5 34 60978.0 35 72697.0 36 84416.0 37 90992.5 38 97569.0 39 114383.0 40 131197.0 41 163102.0 42 195007.0 43 217493.5 44 239980.0 45 242530.0 46 245080.0 47 246915.5 48 248751.0 49 249903.0 50 251055.0 51 230219.0 52 209383.0 53 196966.0 54 184549.0 55 180802.5 56 177056.0 57 174775.5 58 172495.0 59 163329.5 60 154164.0 61 143001.5 62 131839.0 63 119597.0 64 107355.0 65 91967.0 66 76579.0 67 65317.5 68 54056.0 69 47031.0 70 40006.0 71 33173.0 72 26340.0 73 21818.5 74 17297.0 75 13880.5 76 10464.0 77 8089.5 78 5715.0 79 4177.5 80 2640.0 81 2018.5 82 1397.0 83 1099.0 84 801.0 85 535.0 86 269.0 87 182.0 88 95.0 89 74.0 90 53.0 91 32.0 92 11.0 93 10.0 94 9.0 95 5.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3192580.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.574875321188603 #Duplication Level Percentage of deduplicated Percentage of total 1 83.00755750824288 17.0787014644849 2 6.673600246993922 2.746169860507068 3 2.0438242278710734 1.261542860006157 4 1.0081618640834626 0.8297121862837733 5 0.6069225259109765 0.6243677650119601 6 0.4561331228543109 0.563092927955511 7 0.3314037236140334 0.47730132060354696 8 0.2734236364040421 0.45005257831033385 9 0.2242226504792721 0.4152017770017726 >10 2.7955574995972508 14.149697769482794 >50 1.3103261983417775 19.774955875375298 >100 1.2604223442482076 39.50255058576227 >500 0.006255149154670211 0.8698759595420057 >1k 0.0018765447464010635 0.646905091084168 >5k 1.563787288667553E-4 0.21534545780495057 >10k+ 1.563787288667553E-4 0.39452652078355066 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12262 0.3840780810504357 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6693 0.20964235821811827 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 4441 0.13910379692912944 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.026217040763269833 0.0 2 3.132262934679789E-5 0.0 0.0 0.10483684042373254 0.0 3 3.132262934679789E-5 0.0 0.0 0.15792869716655494 0.0 4 3.132262934679789E-5 0.0 0.0 0.2664616078532096 0.0 5 3.132262934679789E-5 3.132262934679789E-5 0.0 0.4387987145192916 0.0 6 3.132262934679789E-5 3.132262934679789E-5 0.0 0.72405389998058 0.0 7 3.132262934679789E-5 3.132262934679789E-5 0.0 0.8765951048994857 0.0 8 3.132262934679789E-5 3.132262934679789E-5 0.0 1.3240075424891466 0.0 9 3.132262934679789E-5 3.132262934679789E-5 0.0 1.5129456427090315 0.0 10 3.132262934679789E-5 3.132262934679789E-5 0.0 1.8062507439124469 0.0 11 3.132262934679789E-5 3.132262934679789E-5 0.0 2.0160183926479522 0.0 12 3.132262934679789E-5 3.132262934679789E-5 0.0 2.2083080142079448 0.0 13 6.264525869359578E-5 3.132262934679789E-5 0.0 2.292565887150831 0.0 14 6.264525869359578E-5 3.132262934679789E-5 0.0 2.3291507182278908 0.0 15 6.264525869359578E-5 3.132262934679789E-5 0.0 2.3720940430623507 0.0 16 6.264525869359578E-5 3.132262934679789E-5 0.0 2.4654668011451553 0.0 17 6.264525869359578E-5 3.132262934679789E-5 0.0 2.5654173113907874 0.0 18 6.264525869359578E-5 3.132262934679789E-5 0.0 2.7335571857243983 0.0 19 6.264525869359578E-5 3.132262934679789E-5 0.0 2.7946363129506544 0.0 20 6.264525869359578E-5 3.132262934679789E-5 0.0 2.8685890408384442 0.0 21 6.264525869359578E-5 3.132262934679789E-5 0.0 2.960990797411498 0.0 22 6.264525869359578E-5 3.132262934679789E-5 0.0 3.062945955935325 0.0 23 6.264525869359578E-5 3.132262934679789E-5 0.0 3.177179585163097 0.0 24 6.264525869359578E-5 3.132262934679789E-5 0.0 3.2655720451797605 0.0 25 6.264525869359578E-5 3.132262934679789E-5 0.0 3.34030783880122 0.0 26 6.264525869359578E-5 3.132262934679789E-5 0.0 3.4145424703531315 0.0 27 6.264525869359578E-5 3.132262934679789E-5 0.0 3.4916587838049478 0.0 28 6.264525869359578E-5 3.132262934679789E-5 0.0 3.5703725513534508 0.0 29 6.264525869359578E-5 3.132262934679789E-5 0.0 3.653690745415933 0.0 30 6.264525869359578E-5 3.132262934679789E-5 0.0 3.7797956511661415 0.0 31 6.264525869359578E-5 3.132262934679789E-5 0.0 3.878712514643329 0.0 32 6.264525869359578E-5 3.132262934679789E-5 0.0 3.969548139749043 0.0 33 6.264525869359578E-5 3.132262934679789E-5 0.0 4.071284039867443 0.0 34 6.264525869359578E-5 3.132262934679789E-5 0.0 4.1736463925727785 0.0 35 6.264525869359578E-5 3.132262934679789E-5 0.0 4.301505365566407 0.0 36 6.264525869359578E-5 3.132262934679789E-5 0.0 4.40408697667717 0.0 37 6.264525869359578E-5 3.132262934679789E-5 0.0 4.508297364513966 0.0 38 6.264525869359578E-5 3.132262934679789E-5 0.0 4.6348407870750306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 8290 0.0 41.319664 1 ATCGTAC 80 0.0 41.25 27 CGTACGT 40 4.1276144E-7 38.5 32 TATACGG 340 0.0 38.17647 2 TAATGCG 145 0.0 37.931034 1 TATACTA 2645 0.0 37.928165 44 TCACGAC 640 0.0 37.8125 25 TAAGGGA 3175 0.0 37.34803 4 AGGGCGA 3595 0.0 37.329624 6 TAGCATA 1955 0.0 37.248085 30 GGGCGAT 6585 0.0 37.18451 7 GTTGATC 2055 0.0 37.14842 16 ATAGGGC 1540 0.0 37.0 4 CGACGGT 650 0.0 36.892307 28 CTCACGA 665 0.0 36.721806 24 TATAGCG 150 0.0 36.666668 1 CTATCGA 30 1.3016137E-4 36.666664 30 CGTAATC 30 1.3016137E-4 36.666664 34 CGGTCTA 645 0.0 36.496124 31 GCTACGA 660 0.0 36.333332 10 >>END_MODULE