##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547194_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 710626 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.54201788282444 31.0 30.0 31.0 27.0 33.0 2 30.864671430541524 31.0 31.0 33.0 28.0 34.0 3 31.035636185560335 31.0 31.0 34.0 28.0 34.0 4 34.86327688545029 35.0 35.0 37.0 32.0 37.0 5 34.65243602119821 35.0 35.0 37.0 32.0 37.0 6 34.70225406894766 35.0 35.0 37.0 31.0 37.0 7 35.353111200547126 35.0 35.0 37.0 33.0 37.0 8 34.31613535108482 35.0 35.0 37.0 32.0 37.0 9 36.41538727825889 39.0 37.0 39.0 32.0 39.0 10 35.739870198951344 37.0 35.0 39.0 30.0 39.0 11 35.52297551736075 37.0 35.0 39.0 30.0 39.0 12 34.96791842685182 37.0 34.0 39.0 30.0 39.0 13 34.64684517594346 37.0 33.0 39.0 27.0 39.0 14 35.54429193415383 38.0 33.0 40.0 27.0 41.0 15 35.8498957257404 38.0 33.0 40.0 29.0 41.0 16 35.99365629740539 38.0 34.0 40.0 30.0 41.0 17 35.9593386675973 38.0 34.0 40.0 30.0 41.0 18 35.897069625935444 38.0 34.0 40.0 29.0 41.0 19 35.85504189264114 37.0 34.0 40.0 29.0 41.0 20 35.694179498076345 37.0 34.0 40.0 29.0 41.0 21 35.51319118636245 37.0 34.0 40.0 29.0 41.0 22 35.44535240759556 37.0 34.0 40.0 28.0 41.0 23 35.3573848972596 37.0 34.0 40.0 28.0 41.0 24 35.26762178698781 37.0 34.0 40.0 27.0 41.0 25 35.063301933787955 36.0 33.0 40.0 27.0 41.0 26 34.82533287552102 36.0 33.0 40.0 27.0 41.0 27 34.64004975894493 36.0 33.0 40.0 26.0 41.0 28 34.636351611114705 36.0 33.0 40.0 25.0 41.0 29 34.534131878090584 36.0 33.0 40.0 25.0 41.0 30 34.574978962210785 36.0 33.0 40.0 25.0 41.0 31 34.53315668157371 36.0 33.0 40.0 25.0 41.0 32 34.30410933458669 36.0 33.0 40.0 24.0 41.0 33 34.159870311528145 36.0 33.0 40.0 24.0 41.0 34 34.05051743111004 36.0 33.0 40.0 24.0 41.0 35 33.84620039233014 36.0 32.0 40.0 23.0 41.0 36 33.75867474592824 36.0 32.0 40.0 23.0 41.0 37 33.74133088291168 36.0 32.0 40.0 23.0 41.0 38 33.79989192627345 36.0 32.0 40.0 23.0 41.0 39 33.72688446524614 36.0 32.0 40.0 23.0 41.0 40 33.61382077210797 36.0 32.0 40.0 23.0 41.0 41 33.6625257167624 36.0 32.0 40.0 23.0 41.0 42 33.511702358202484 35.0 32.0 40.0 23.0 41.0 43 33.56900113421124 35.0 32.0 40.0 23.0 41.0 44 33.19547976009884 35.0 31.0 39.0 21.0 41.0 45 33.14222530557565 35.0 31.0 39.0 22.0 41.0 46 33.102464587560824 35.0 31.0 39.0 22.0 41.0 47 33.06589964341299 35.0 31.0 39.0 22.0 41.0 48 33.090259855395104 35.0 31.0 39.0 22.0 41.0 49 33.09987813561564 35.0 31.0 39.0 22.0 40.0 50 32.51329954153099 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 5.0 14 9.0 15 30.0 16 126.0 17 286.0 18 664.0 19 1161.0 20 2055.0 21 3134.0 22 4607.0 23 6332.0 24 8836.0 25 11744.0 26 14941.0 27 18082.0 28 20711.0 29 24191.0 30 28311.0 31 34002.0 32 40980.0 33 50038.0 34 69097.0 35 75980.0 36 62242.0 37 71199.0 38 83135.0 39 78726.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.73208973496607 24.457590912800825 28.035563010641322 13.774756341591779 2 30.765972536890008 26.1469464950621 29.538322549414183 13.54875841863371 3 29.375649075603764 25.868037476816212 30.43415242335631 14.322161024223712 4 24.918452181597633 29.166115509424085 30.916684725861426 14.99874758311686 5 21.729714364518042 33.62232735644347 30.685480125973434 13.962478153065044 6 20.954482385952666 42.1587445435433 27.165344358354464 9.721428712149569 7 88.89246945650736 3.6598717187381267 6.083509469115963 1.3641493556385496 8 87.13120544421398 5.857792988154106 5.592956069718811 1.4180454979131074 9 83.93613518221962 5.512041495807921 7.620604931426659 2.9312183905458005 10 43.034169872760074 28.929000627615654 15.132573252315565 12.904256247308709 11 38.57528432677667 24.862867387345805 21.473742868963424 15.088105416914102 12 35.54851637851697 21.851719469875857 26.032540323602007 16.56722382800517 13 23.012104820257072 33.61247688657606 26.280490722264595 17.094927570902275 14 18.883913619822522 35.98573651963199 27.168018057318477 17.962331803227013 15 18.228857373639578 24.86174161936096 39.78829933044949 17.121101676549973 16 19.33520586074813 20.915361948479227 39.83670735379792 19.912724836974725 17 19.990121385932966 21.785158437771766 28.644603490443636 29.580116685851632 18 22.646652388176058 24.393281416666433 30.89754667011902 22.06251952503849 19 28.43324055128858 25.959506125585047 25.30233906443052 20.304914258695856 20 29.96231491670724 24.475884642554593 25.230993518390825 20.33080692234734 21 24.237503271763206 27.23823783537332 27.20165037586579 21.32260851699769 22 24.096219389664885 25.471344983155696 25.23634091631885 25.196094710860567 23 21.901956866199658 29.28446186883114 25.4260328217656 23.3875484432036 24 21.843135488991397 25.809356820606055 33.74151804183917 18.60598964856338 25 21.489503620751282 26.032821765598218 30.878408614376617 21.59926599927388 26 20.19740341614295 31.836437169481556 26.6792940308967 21.28686538347879 27 21.112934229819906 30.68266570601132 27.125238873894286 21.07916119027449 28 18.922893336297854 29.084919493516985 33.23182658669961 18.760360583485546 29 20.325881687413634 25.219313675548037 32.47207391792589 21.982730719112446 30 20.91367329650196 28.995702380717848 29.053257268943156 21.037367053837038 31 26.17621646266813 27.416249897977274 25.442497178543988 20.96503646081061 32 27.268070686971768 27.100190536231434 26.134422326230677 19.49731645056612 33 26.947367532288435 27.265396988007755 24.705259869467202 21.081975610236608 34 21.864384359705387 27.688967192306503 27.059662888776938 23.386985559211173 35 22.124999648197505 26.600912434951717 28.70412847264243 22.569959444208347 36 27.42033080692235 27.68826358731597 24.60422219282717 20.28718341293451 37 22.275711837168917 31.905953342545867 26.870956030316933 18.94737878996828 38 22.617241699571927 30.90345695203947 24.911979015684764 21.567322332703842 39 22.22209713689057 31.078373152685096 25.427017868752337 21.27251184167199 40 24.575655830211673 27.218114732644178 25.395637086174727 22.81059235096943 41 20.091159062573 26.01227649987476 27.367138269638318 26.529426167913922 42 22.064911782006288 27.570620832899444 24.705541311463413 25.658926073630855 43 21.885070346426954 27.755528224410593 26.277676302302478 24.08172512685998 44 21.47515007894448 29.420116911005227 27.37501864553225 21.729714364518042 45 20.037825804290865 32.262258909749995 24.522885455921962 23.17702983003718 46 22.024665576548003 31.815188298767566 25.657800305646006 20.502345819038425 47 22.39419891757408 28.611956218883066 26.511413880156372 22.48243098338648 48 23.55275489497992 25.04369386991188 28.944620658405405 22.458930576702794 49 21.305018392234455 26.327069372637645 29.307962275514825 23.059949959613075 50 20.65573170697385 30.425287000475638 27.205590563812756 21.71339072873776 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 522.0 1 726.5 2 931.0 3 3147.5 4 5364.0 5 4056.5 6 2749.0 7 2832.5 8 2916.0 9 3103.0 10 3290.0 11 3290.5 12 3291.0 13 3239.0 14 3187.0 15 3245.0 16 3303.0 17 3196.5 18 3090.0 19 3079.0 20 3068.0 21 3122.5 22 3177.0 23 3409.5 24 3642.0 25 4664.0 26 5686.0 27 6727.0 28 7768.0 29 9410.5 30 11053.0 31 12580.0 32 14107.0 33 15481.5 34 16856.0 35 19035.0 36 21214.0 37 22973.0 38 24732.0 39 28501.0 40 32270.0 41 40578.5 42 48887.0 43 53252.0 44 57617.0 45 58481.5 46 59346.0 47 57822.0 48 56298.0 49 55867.5 50 55437.0 51 51497.5 52 47558.0 53 42900.5 54 38243.0 55 36419.5 56 34596.0 57 33221.5 58 31847.0 59 30235.5 60 28624.0 61 26235.0 62 23846.0 63 20613.5 64 17381.0 65 14464.5 66 11548.0 67 10008.5 68 8469.0 69 7926.0 70 7383.0 71 6085.5 72 4788.0 73 3794.0 74 2800.0 75 2308.5 76 1817.0 77 1446.5 78 1076.0 79 807.5 80 539.0 81 371.5 82 204.0 83 132.5 84 61.0 85 41.5 86 22.0 87 14.0 88 6.0 89 8.0 90 10.0 91 8.5 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 710626.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.007223976990367 #Duplication Level Percentage of deduplicated Percentage of total 1 76.88925429387095 23.072330750199534 2 6.806534398238797 4.084904043900818 3 2.8341489564772138 2.551348275634958 4 1.6918740577507154 2.03073775167141 5 1.1806733293090208 1.7714364518117345 6 0.935532238767306 1.6843635255831466 7 0.7350080286887719 1.5438885379225094 8 0.6288674338082582 1.5096452750495652 9 0.5890755841699699 1.5908870694208253 >10 7.182917593232256 49.039423247953 >50 0.49346516193052314 9.081712115728179 >100 0.031249684166735674 1.340654353656994 >500 4.6641319651844295E-4 0.11084646080972327 >1k 9.328263930368859E-4 0.5878221406576234 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2954 0.4156898284048149 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1246 0.17533836363994562 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 792 0.11145103049986912 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012524168831424688 0.0 2 0.0 0.0 0.0 0.05980642419500553 0.0 3 0.0 0.0 0.0 0.09484595272337347 0.0 4 0.0 0.0 0.0 0.15338588793542596 0.0 5 0.0 0.0 0.0 0.251468423615235 0.0 6 0.0 0.0 0.0 0.44791493697106494 0.0 7 0.0 0.0 0.0 0.5495154976035214 0.0 8 0.0 0.0 0.0 0.8370084967338657 0.0 9 0.0 0.0 0.0 0.9836397767602086 0.0 10 0.0 0.0 0.0 1.203727417797829 0.0 11 0.0 0.0 0.0 1.3580983527199961 0.0 12 0.0 0.0 0.0 1.5027595387728565 0.0 13 0.0 0.0 0.0 1.5731200378258043 0.0 14 0.0 0.0 0.0 1.6061894723806898 0.0 15 0.0 0.0 0.0 1.6388367439412574 0.0 16 0.0 0.0 0.0 1.7180626658748765 0.0 17 0.0 0.0 0.0 1.8057318476948494 0.0 18 0.0 0.0 0.0 1.9449049148215798 0.0 19 0.0 0.0 0.0 1.9975345681131846 0.0 20 0.0 0.0 0.0 2.06043685426652 0.0 21 0.0 0.0 0.0 2.143602964147104 0.0 22 0.0 0.0 0.0 2.2376045908818423 0.0 23 0.0 0.0 0.0 2.349899947370347 0.0 24 0.0 0.0 0.0 2.4326438942566133 0.0 25 2.8144199621179074E-4 0.0 0.0 2.505115208281149 0.0 26 2.8144199621179074E-4 0.0 0.0 2.574209218351144 0.0 27 2.8144199621179074E-4 0.0 0.0 2.6462583693813624 0.0 28 2.8144199621179074E-4 0.0 0.0 2.724921407322558 0.0 29 2.8144199621179074E-4 0.0 0.0 2.807946796205036 0.0 30 2.8144199621179074E-4 0.0 0.0 2.9193978267049054 0.0 31 2.8144199621179074E-4 0.0 0.0 3.01522882641502 0.0 32 2.8144199621179074E-4 0.0 0.0 3.1110598261251345 0.0 33 2.8144199621179074E-4 0.0 0.0 3.211816060768956 0.0 34 2.8144199621179074E-4 0.0 0.0 3.3093357124563414 0.0 35 2.8144199621179074E-4 0.0 0.0 3.4314815388122586 0.0 36 2.8144199621179074E-4 0.0 0.0 3.543917616298869 0.0 37 2.8144199621179074E-4 0.0 0.0 3.658183066760856 0.0 38 2.8144199621179074E-4 0.0 0.0 3.7730114012152667 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 7.854451E-4 44.0 1 CTATGCG 35 1.4450416E-7 44.0 1 GTATACG 20 7.854451E-4 44.0 1 CGGTCTA 30 2.526347E-6 44.0 31 CGTTTTT 2450 0.0 41.485714 1 ACGTAGG 140 0.0 40.857143 2 TAAGGGA 790 0.0 39.822784 4 TGCGTAG 50 1.3460522E-9 39.600002 1 TATACGG 95 0.0 39.36842 2 AATCCGG 45 2.348861E-8 39.11111 2 AATGCGG 90 0.0 39.11111 2 CAACGCG 40 4.1215753E-7 38.5 1 GCCGATT 80 0.0 38.5 9 GCGATAT 120 0.0 38.5 9 GCTACGA 115 0.0 38.26087 10 TATGGGC 335 0.0 38.089554 4 TTCGAAT 35 7.286284E-6 37.714287 16 TGCGTTG 35 7.286284E-6 37.714287 1 TGGGCGA 440 0.0 37.5 6 GGGCGAT 1580 0.0 37.17721 7 >>END_MODULE