##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547193_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1644754 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.67372081174449 31.0 30.0 31.0 28.0 33.0 2 30.9945152892165 31.0 31.0 33.0 28.0 34.0 3 31.16681217981534 31.0 31.0 34.0 28.0 34.0 4 34.98466214400452 35.0 35.0 37.0 32.0 37.0 5 34.77757281636038 35.0 35.0 37.0 32.0 37.0 6 34.81622114918097 35.0 35.0 37.0 32.0 37.0 7 35.481332770736536 35.0 35.0 37.0 35.0 37.0 8 34.45641719065587 36.0 35.0 37.0 33.0 37.0 9 36.59285279135968 39.0 37.0 39.0 32.0 39.0 10 36.007985388696426 38.0 35.0 39.0 30.0 39.0 11 35.772907073033416 37.0 35.0 39.0 30.0 39.0 12 35.255846163012826 37.0 34.0 39.0 30.0 39.0 13 34.89978683742371 37.0 33.0 39.0 27.0 39.0 14 35.801135002559654 38.0 34.0 40.0 27.0 41.0 15 36.10008852387652 38.0 34.0 40.0 30.0 41.0 16 36.2465475080164 38.0 34.0 40.0 30.0 41.0 17 36.190978103716425 38.0 34.0 40.0 30.0 41.0 18 36.15011667398286 38.0 34.0 40.0 30.0 41.0 19 36.173120722004626 38.0 34.0 40.0 30.0 41.0 20 36.032576908157694 38.0 34.0 40.0 30.0 41.0 21 35.867816098942455 38.0 34.0 40.0 29.0 41.0 22 35.792214519618135 37.0 34.0 40.0 29.0 41.0 23 35.69852938494146 37.0 34.0 40.0 29.0 41.0 24 35.62167169072092 37.0 34.0 40.0 29.0 41.0 25 35.434780520369614 37.0 34.0 40.0 29.0 41.0 26 35.26867786915247 37.0 34.0 40.0 27.0 41.0 27 35.09416058571677 37.0 33.0 40.0 27.0 41.0 28 35.142217620385786 37.0 34.0 40.0 27.0 41.0 29 35.0642971532521 37.0 34.0 40.0 27.0 41.0 30 35.10121452813004 37.0 34.0 40.0 27.0 41.0 31 35.03992329552018 37.0 33.0 40.0 27.0 41.0 32 34.82207126415257 37.0 33.0 40.0 26.0 41.0 33 34.70527872253237 37.0 33.0 40.0 25.0 41.0 34 34.66057416489031 37.0 33.0 40.0 25.0 41.0 35 34.480434764104544 37.0 33.0 40.0 25.0 41.0 36 34.38036144006946 37.0 33.0 40.0 24.0 41.0 37 34.378366612879496 37.0 33.0 40.0 24.0 41.0 38 34.412853229115115 37.0 33.0 40.0 24.0 41.0 39 34.342088847329144 37.0 33.0 40.0 24.0 41.0 40 34.26124757866526 36.0 33.0 40.0 24.0 41.0 41 34.29744995300209 36.0 33.0 40.0 24.0 41.0 42 34.16733991830997 36.0 33.0 40.0 23.0 41.0 43 34.214418691184214 36.0 33.0 40.0 24.0 41.0 44 33.92170987272261 36.0 33.0 40.0 23.0 41.0 45 33.84773224445723 36.0 32.0 40.0 23.0 41.0 46 33.8147589244349 36.0 32.0 40.0 23.0 41.0 47 33.76949805259631 36.0 32.0 40.0 23.0 41.0 48 33.79116390657813 35.0 32.0 40.0 23.0 41.0 49 33.804269209863605 36.0 32.0 39.0 24.0 41.0 50 33.219297232291275 35.0 31.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 7.0 14 28.0 15 51.0 16 175.0 17 429.0 18 1034.0 19 1989.0 20 3256.0 21 5304.0 22 8122.0 23 11680.0 24 16227.0 25 21939.0 26 28496.0 27 35134.0 28 41438.0 29 49917.0 30 60886.0 31 74019.0 32 90716.0 33 112236.0 34 157726.0 35 180939.0 36 146726.0 37 171527.0 38 209071.0 39 215679.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.6692295625972 24.615778408199645 27.936335768145266 13.778656261057884 2 28.97071537749718 27.335394837161058 30.175637207752647 13.51825257758911 3 27.95840593790925 26.87131327845988 31.420078625739777 13.750202157891088 4 24.86560300202948 29.44580162139749 30.619107781467626 15.069487595105407 5 22.433932369217523 33.76389417505597 29.808713035505612 13.993460420220897 6 20.337631037833013 42.762443502189385 26.5581357455279 10.3417897144497 7 90.54934658921638 3.411209214265477 5.006766969406975 1.0326772271111668 8 88.86964251188931 5.462519015001636 4.299427148375988 1.3684113247330603 9 85.79763295909298 5.566181933590069 6.1083298779027135 2.5278552294142465 10 39.79920401470372 37.05234946989033 12.303116453889153 10.8453300615168 11 35.81623756500972 24.463901592578587 25.554520615240943 14.16534022717075 12 32.826185557232265 23.66031637557957 26.81811383343649 16.69538423375167 13 22.46475764764822 34.58255763475876 27.404280518545633 15.548404199047393 14 18.534504248051682 37.05611903056628 27.67818166120891 16.731195060173132 15 16.990990749984498 25.64164610634782 40.82276133695373 16.544601806713953 16 18.735081355631298 23.18906049172095 39.396408216669485 18.67944993597827 17 19.157089753239696 22.093455921067832 29.881733073760575 28.8677212519319 18 20.945867892706143 24.63888216718123 33.307898931998345 21.107351008114282 19 26.739317855436134 25.56771407760674 27.024710078224462 20.66825798873266 20 27.784702149987172 25.655751559199736 26.35530906141587 20.204237229397222 21 23.342396492119793 28.430695410985475 28.84625907582532 19.380649021069413 22 23.32312309317989 25.61531998098196 26.765218385241806 24.296338540596345 23 19.690725786348597 30.64810907892609 26.877150017571015 22.784015117154297 24 19.668838014681832 27.185402801877974 35.14981571712244 17.995943466317758 25 19.03707180526693 27.653314720620838 33.14629421785872 20.163319256253516 26 18.430415733903065 32.30556058839194 28.221484793470637 21.04253888423436 27 19.00715851732235 31.551466055106115 29.21707440747978 20.224301020091758 28 17.20348453324935 29.024279618715017 36.112999269191626 17.65923657884401 29 17.88054627014131 25.59738416808836 34.87457698841286 21.647492573357475 30 20.35526285389791 28.725693933560887 31.219744715623126 19.69929849691808 31 25.56880846619008 27.115361932544317 27.25483567755421 20.060993923711386 32 26.123237882382412 26.708796573834142 28.29304564694781 18.87491989683564 33 25.126371481692704 26.675964916333996 27.319587002068396 20.87807659990491 34 20.13243317845708 27.59452173394927 29.455286322453084 22.81775876514056 35 20.2064260065639 26.695967907662787 30.777003734297043 22.320602351476268 36 26.246721394202417 26.693900729227593 27.398200581971526 19.66117729459846 37 21.224693783994443 30.535812650402434 28.93058779610811 19.308905769495013 38 20.588246023417483 31.92106539944575 26.18020688808174 21.31048168905502 39 20.762861801825682 31.140401543331098 27.042159496192138 21.05457715865108 40 23.274969995513008 27.06392566912742 27.09402135516922 22.56708298019035 41 18.92161380972474 26.058304159771005 28.824857699084482 26.195224331419777 42 20.993838592275804 27.993791168770528 26.66866899244507 24.343701246508598 43 21.791039875872016 27.180538852618692 27.759713610667614 23.26870766084168 44 20.72516619506625 29.21214965885476 29.24285333855397 20.819830807525015 45 18.85832166998834 32.601835897647916 26.513569810439737 22.026272621924008 46 21.55629352474595 30.613392641087966 27.70092062399605 20.129393210170033 47 21.550517585000552 27.6498491567736 28.562569235277735 22.237064022948115 48 22.186904546211775 25.90478576127494 30.23637577412792 21.671933918385363 49 20.963317310673816 25.67338337526463 31.416309065063835 21.94699024899772 50 20.32303919005517 30.78770442266746 28.14402640151658 20.745229985760787 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1222.0 1 1485.0 2 1748.0 3 5724.0 4 9700.0 5 7409.0 6 5118.0 7 5319.0 8 5520.0 9 5990.0 10 6460.0 11 6761.0 12 7062.0 13 6988.5 14 6915.0 15 6846.5 16 6778.0 17 6641.0 18 6504.0 19 6472.0 20 6440.0 21 7246.0 22 8052.0 23 8908.5 24 9765.0 25 12771.0 26 15777.0 27 18684.5 28 21592.0 29 25669.0 30 29746.0 31 34273.0 32 38800.0 33 45308.5 34 51817.0 35 56810.5 36 61804.0 37 65328.0 38 68852.0 39 80964.0 40 93076.0 41 111720.5 42 130365.0 43 143268.0 44 156171.0 45 159574.5 46 162978.0 47 149937.0 48 136896.0 49 129648.0 50 122400.0 51 114437.0 52 106474.0 53 97748.0 54 89022.0 55 78119.0 56 67216.0 57 61139.5 58 55063.0 59 51126.0 60 47189.0 61 41188.5 62 35188.0 63 30852.0 64 26516.0 65 21485.0 66 16454.0 67 13252.5 68 10051.0 69 8855.5 70 7660.0 71 6765.5 72 5871.0 73 4460.5 74 3050.0 75 2377.5 76 1705.0 77 1345.0 78 985.0 79 771.0 80 557.0 81 328.5 82 100.0 83 80.5 84 61.0 85 38.0 86 15.0 87 11.0 88 7.0 89 7.0 90 7.0 91 5.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1644754.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.797575633331142 #Duplication Level Percentage of deduplicated Percentage of total 1 79.21501947456395 18.059103977671707 2 7.049746829018234 3.2143427306075916 3 2.746543542736041 1.8784360243728644 4 1.4723032962916802 1.3425978300964931 5 0.9538026028490179 1.0872193488859296 6 0.6689755363751854 0.9150612232416934 7 0.5009040330875992 0.7993578305548605 8 0.3887764089659234 0.7090527670284414 9 0.3417978954055016 0.7012947034638295 >10 4.323671670425021 24.15763560382043 >50 1.7370999362457957 28.441040390525114 >100 0.6003037586438356 18.114968835699706 >500 5.275076961248751E-4 0.08796943362586261 >1k 2.6375384806243753E-4 0.17491666604076167 >5k 2.6375384806243753E-4 0.3170026343646942 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5272 0.32053425618663944 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2909 0.17686535494061725 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.017935812893599894 0.0 2 0.0 0.0 0.0 0.07393202874107617 0.0 3 0.0 0.0 0.0 0.11928835558387454 0.0 4 0.0 0.0 0.0 0.21492575789449364 0.0 5 0.0 0.0 0.0 0.3547034997330908 0.0 6 0.0 0.0 0.0 0.619302339437995 0.0 7 0.0 0.0 0.0 0.7505681700728498 0.0 8 0.0 0.0 0.0 1.180419685861837 0.0 9 0.0 0.0 0.0 1.3910286887887187 0.0 10 0.0 0.0 0.0 1.718798069498539 0.0 11 0.0 0.0 0.0 1.9260023079439235 0.0 12 0.0 0.0 0.0 2.1378880975513663 0.0 13 0.0 0.0 0.0 2.224770391195279 0.0 14 0.0 0.0 0.0 2.262162001126004 0.0 15 0.0 0.0 0.0 2.305390350167867 0.0 16 0.0 0.0 0.0 2.389354274256211 0.0 17 0.0 0.0 0.0 2.4936251865020544 0.0 18 0.0 0.0 0.0 2.661005840387073 0.0 19 0.0 0.0 0.0 2.7335394837161058 0.0 20 0.0 0.0 0.0 2.814585038248881 0.0 21 0.0 0.0 0.0 2.908520058318752 0.0 22 0.0 0.0 0.0 3.0144933528053435 0.0 23 0.0 0.0 0.0 3.1416856259355503 0.0 24 0.0 0.0 0.0 3.2316686872322546 0.0 25 0.0 0.0 0.0 3.30912707918631 0.0 26 0.0 0.0 0.0 3.3829983085616453 0.0 27 0.0 0.0 0.0 3.463739866265715 0.0 28 0.0 0.0 0.0 3.553966125025384 0.0 29 0.0 0.0 0.0 3.654528275961025 0.0 30 0.0 0.0 0.0 3.7789845776328863 0.0 31 0.0 0.0 0.0 3.8894570251843135 0.0 32 0.0 0.0 0.0 3.990809567874588 0.0 33 0.0 0.0 0.0 4.089790935300963 0.0 34 0.0 0.0 0.0 4.202391360653325 0.0 35 0.0 0.0 0.0 4.324476487061287 0.0 36 0.0 0.0 0.0 4.434888135246973 0.0 37 0.0 0.0 0.0 4.556000471803078 0.0 38 0.0 0.0 0.0 4.678085598211039 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGAAA 35 1.4465877E-7 44.0 17 TAACCGT 20 7.8574725E-4 44.0 39 TACGAAC 25 4.4436798E-5 44.0 30 ACTCGAC 20 7.8574725E-4 44.0 18 CGTCCAT 20 7.8574725E-4 44.0 28 AAGTCGA 20 7.8574725E-4 44.0 13 CGACGGT 195 0.0 41.74359 28 CGTTGAT 150 0.0 41.066666 25 CGCGTGA 65 0.0 40.615383 40 CGTTTTT 4510 0.0 40.439026 1 GTATGCG 120 0.0 40.333332 1 CGCATAT 45 2.3519533E-8 39.11111 24 AGGGCGC 310 0.0 39.032257 6 CGTAAGG 420 0.0 38.238094 2 GACCGAT 980 0.0 38.163265 9 CTAAGCG 35 7.292123E-6 37.714287 1 TTTAGCG 105 0.0 37.714283 1 CGGTCTA 210 0.0 37.714283 31 AGTAACG 65 1.0913936E-11 37.230766 1 CTCACGA 225 0.0 37.155552 24 >>END_MODULE