##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547190_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3820818 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.691082380788618 31.0 30.0 31.0 28.0 34.0 2 31.031537749246365 31.0 31.0 33.0 28.0 34.0 3 31.096975830829944 31.0 31.0 34.0 28.0 34.0 4 34.95350995519807 35.0 35.0 37.0 32.0 37.0 5 34.79454504244902 35.0 35.0 37.0 32.0 37.0 6 34.83883503480145 35.0 35.0 37.0 32.0 37.0 7 35.52866244872171 36.0 35.0 37.0 35.0 37.0 8 34.50654938288084 37.0 35.0 37.0 33.0 37.0 9 36.630690862532575 39.0 37.0 39.0 32.0 39.0 10 36.07850805769864 38.0 35.0 39.0 31.0 39.0 11 35.818481801540926 37.0 35.0 39.0 30.0 39.0 12 35.75136894769654 37.0 35.0 39.0 30.0 39.0 13 35.748283482751596 37.0 35.0 39.0 30.0 39.0 14 36.72446999569202 38.0 35.0 40.0 31.0 41.0 15 36.80664245195662 38.0 35.0 40.0 31.0 41.0 16 36.79775351770223 38.0 35.0 40.0 31.0 41.0 17 36.7116269343371 38.0 35.0 40.0 31.0 41.0 18 36.50433022457495 38.0 35.0 40.0 30.0 41.0 19 36.37601267581968 38.0 35.0 40.0 30.0 41.0 20 36.14085962744103 38.0 34.0 40.0 30.0 41.0 21 36.00131621029842 38.0 34.0 40.0 30.0 41.0 22 35.9646060084516 38.0 34.0 40.0 30.0 41.0 23 35.82089070979042 37.0 34.0 40.0 30.0 41.0 24 35.6921342497863 37.0 34.0 40.0 29.0 41.0 25 35.51389336000825 37.0 34.0 40.0 29.0 41.0 26 35.3733561766093 37.0 34.0 40.0 28.0 41.0 27 35.188114953394795 37.0 34.0 40.0 27.0 41.0 28 35.189058468631586 37.0 34.0 40.0 27.0 41.0 29 35.048878538574726 37.0 33.0 40.0 27.0 41.0 30 34.96538646959892 37.0 33.0 40.0 26.0 41.0 31 34.78895618686889 37.0 33.0 40.0 25.0 41.0 32 34.32297900606624 37.0 33.0 40.0 23.0 41.0 33 33.89196685107744 37.0 33.0 40.0 21.0 41.0 34 33.540652027916536 37.0 32.0 40.0 18.0 41.0 35 33.169248312795844 37.0 31.0 40.0 16.0 41.0 36 33.05780751661032 37.0 31.0 40.0 15.0 41.0 37 33.027164340201494 37.0 31.0 40.0 15.0 41.0 38 33.02318718138367 37.0 31.0 40.0 15.0 41.0 39 32.91053015349069 37.0 31.0 40.0 15.0 41.0 40 32.86807406162764 37.0 31.0 40.0 15.0 41.0 41 32.8836395766561 37.0 31.0 40.0 15.0 41.0 42 32.73048886390296 37.0 31.0 40.0 13.0 41.0 43 32.77990864783405 37.0 31.0 40.0 13.0 41.0 44 32.40362953692115 36.0 30.0 40.0 10.0 41.0 45 32.378342019954886 36.0 30.0 40.0 10.0 41.0 46 32.34456731516654 36.0 30.0 40.0 10.0 41.0 47 32.313443875107374 36.0 30.0 40.0 10.0 41.0 48 32.30989751409253 36.0 30.0 40.0 10.0 41.0 49 32.30860250344298 36.0 30.0 40.0 10.0 41.0 50 31.794188050831 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 7.0 13 14.0 14 44.0 15 187.0 16 578.0 17 1563.0 18 3700.0 19 7506.0 20 12313.0 21 18867.0 22 27501.0 23 39373.0 24 55534.0 25 80289.0 26 109175.0 27 124938.0 28 122741.0 29 123935.0 30 134382.0 31 157346.0 32 185398.0 33 224982.0 34 289813.0 35 333166.0 36 345513.0 37 407646.0 38 501706.0 39 512599.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.374285820470902 22.41082930409143 25.89073858006322 22.324146295374444 2 37.33472779912574 23.69958474860619 26.734877191219265 12.230810261048813 3 25.5592388854952 24.38611313074844 37.759767672786296 12.29488031097006 4 22.58937745791608 26.620032673631666 37.278326264166466 13.512263604285785 5 20.350537502702302 30.443297744095638 36.61226470352684 12.593900049675227 6 18.670112002194294 38.868771032799785 33.286196830102874 9.17492013490305 7 82.14913665084282 2.4759096088847987 14.303036679580131 1.0719170606922392 8 80.59072690717014 4.790440162289855 13.556285591200629 1.062547339339377 9 77.43375894899994 5.070982182349434 15.41243262568382 2.08282624296682 10 31.191802383678052 37.77719849519134 21.15418740175533 9.876811719375276 11 22.000236598550362 25.373100733926606 37.60432975347164 15.02233291405139 12 22.127905595084613 23.43681379222983 37.785887733987856 16.649392878697704 13 20.500976492468368 25.303063375434263 38.25667697336016 15.939283158737213 14 18.24352795657893 28.283158213764697 36.91432044132958 16.558993388326794 15 17.531847892257627 25.911074539535772 40.85318902915554 15.70388853905106 16 20.173716727674545 24.701464450806085 39.61790381012652 15.506915011392849 17 20.311017169621792 23.533625522074068 36.89073910351134 19.264618204792797 18 20.52811727750445 24.27969612789722 38.082185542467606 17.110001052130723 19 21.98537067193465 24.84868423463248 35.860645547628806 17.305299545804065 20 23.24075629878209 25.02011349402144 35.3052409196146 16.433889287581874 21 22.287321720113336 24.883598224254598 36.19279955234717 16.636280503284897 22 21.500683884969135 23.625543011993766 36.306230760010024 18.567542343027068 23 18.978422945034286 26.31070100695715 36.50843876887096 18.20243727913761 24 18.668463140615437 25.30308954784028 38.5778123951468 17.450634916397483 25 18.8980998309786 26.461872824091593 36.872182867647716 17.76784447728209 26 18.762788491888386 27.990446024908806 35.62258134252927 17.62418414067354 27 18.404409736344416 26.85757343061093 36.86265611185877 17.87536072118588 28 17.86065182900625 26.558187278221574 38.3436740509493 17.23748684182288 29 18.877763871506048 25.153409557848605 37.787772147220835 18.181054423424513 30 19.171208887730323 26.09087896884908 36.94093777824539 17.796974365175206 31 20.702373156742876 26.556014968522447 35.04294106654648 17.698670808188194 32 20.924262814926017 26.903401313540716 34.611410436194554 17.560925435338714 33 20.93200984710604 27.493327345086836 33.53737341061521 18.03728939719191 34 19.694369111535803 28.18652969076255 33.39750807287864 18.72159312482301 35 19.67814221980738 28.185090208431806 33.21772981597134 18.919037755789468 36 21.38445222986282 28.72874342614592 31.35572016254111 18.53108418145015 37 20.327688992252444 29.61316137015686 31.453264719753726 18.605884917836963 38 20.21161437158221 29.741589366465504 30.7186052829525 19.328190978999785 39 20.44742774976458 29.258027992958574 30.837506523472197 19.457037733804647 40 21.220691485435843 28.36633412007586 31.021838779025853 19.39113561546245 41 19.466014869067305 28.187707449033166 31.19947089864003 21.1468067832595 42 20.331667197966507 29.051737088759527 30.184557338245373 20.432038375028593 43 20.20656309722159 28.803727369374833 30.644485029122038 20.345224504281546 44 20.029820839411876 29.974497607580364 30.77511150753582 19.220570045471938 45 20.023827358434765 29.745750779021662 30.31390136876449 19.916520493779082 46 20.228155332182794 29.80885244992041 30.400689067105525 19.562303150791273 47 20.15505580218686 28.63439190246696 31.231898509690858 19.97865378565532 48 20.635659693814258 28.07885641242268 31.324182413294743 19.961301480468318 49 20.23689691579133 27.961996619572037 31.696772785304088 20.10433367933254 50 19.381451825237423 29.099082971238094 31.420575384642763 20.098889818881716 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1693.0 1 2686.0 2 3679.0 3 49472.0 4 95265.0 5 72233.0 6 49201.0 7 49450.0 8 49699.0 9 50433.0 10 51167.0 11 50406.0 12 49645.0 13 48571.5 14 47498.0 15 45031.0 16 42564.0 17 39904.0 18 37244.0 19 36115.5 20 34987.0 21 34395.5 22 33804.0 23 36208.5 24 38613.0 25 42372.0 26 46131.0 27 54319.5 28 62508.0 29 72016.0 30 81524.0 31 92073.5 32 102623.0 33 119176.0 34 135729.0 35 148514.5 36 161300.0 37 175048.0 38 188796.0 39 203112.5 40 217429.0 41 231944.0 42 246459.0 43 261694.5 44 276930.0 45 279978.0 46 283026.0 47 280580.0 48 278134.0 49 270419.5 50 262705.0 51 241742.5 52 220780.0 53 203114.0 54 185448.0 55 166240.5 56 147033.0 57 134379.0 58 121725.0 59 110278.5 60 98832.0 61 83287.0 62 67742.0 63 56215.5 64 44689.0 65 34134.5 66 23580.0 67 18411.5 68 13243.0 69 10446.5 70 7650.0 71 6222.5 72 4795.0 73 3885.5 74 2976.0 75 2426.5 76 1877.0 77 1559.5 78 1242.0 79 906.0 80 570.0 81 373.5 82 177.0 83 114.5 84 52.0 85 41.0 86 30.0 87 20.5 88 11.0 89 10.0 90 9.0 91 5.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3820818.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.526386580363273 #Duplication Level Percentage of deduplicated Percentage of total 1 78.93538928744587 21.728060403977008 2 5.7855424911595374 3.185101583775508 3 2.412883271918218 1.99253873148338 4 1.5126379111745774 1.665498235964185 5 1.1320306445913504 1.5580356571919665 6 0.8864324802016296 1.464016987645216 7 0.6929721155956471 1.3352512840308575 8 0.5904416126080426 1.300217926542566 9 0.5136828795176771 1.2725850169185977 >10 6.458225725968101 41.5523737796941 >50 1.001318287121685 18.022282887417035 >100 0.0760228204019583 2.9760547878745696 >500 0.0017427400530068558 0.3373450979012542 >1k 5.809133508869002E-4 0.2501971700612527 >5k 0.0 0.0 >10k+ 9.681889181448337E-5 1.3604404495224505 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51047 1.3360228097752889 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020519166314647806 0.0 2 0.0 0.0 0.0 0.08592400894258768 0.0 3 0.0 0.0 0.0 0.1688905360056407 0.0 4 0.0 0.0 0.0 0.2270717945738321 0.0 5 0.0 0.0 0.0 0.3481715171986732 0.0 6 0.0 0.0 0.0 0.6240810213938481 0.0 7 0.0 0.0 0.0 0.7887839724373158 0.0 8 0.0 0.0 0.0 1.1125628072313312 0.0 9 0.0 0.0 0.0 1.3120227134608349 0.0 10 0.0 0.0 0.0 1.5513170216430094 0.0 11 0.0 0.0 0.0 1.6887221532143117 0.0 12 0.0 0.0 0.0 1.8306551110259635 0.0 13 0.0 0.0 0.0 1.9240120832764083 0.0 14 0.0 0.0 0.0 1.9847058928219037 0.0 15 0.0 0.0 0.0 2.032496706202703 0.0 16 0.0 0.0 0.0 2.1049419260482964 0.0 17 0.0 0.0 0.0 2.181810282510185 0.0 18 0.0 0.0 0.0 2.307280796939294 0.0 19 0.0 0.0 0.0 2.3669015378382325 0.0 20 0.0 0.0 0.0 2.43623224136821 0.0 21 0.0 0.0 0.0 2.5066360135447434 0.0 22 0.0 0.0 0.0 2.586252472638058 0.0 23 0.0 0.0 0.0 2.673930032783556 0.0 24 0.0 0.0 0.0 2.7494897689447653 0.0 25 0.0 0.0 0.0 2.8199458859333264 0.0 26 0.0 0.0 0.0 2.889171899839249 0.0 27 0.0 0.0 0.0 2.9714841167519626 0.0 28 0.0 0.0 0.0 3.0535607820105537 0.0 29 0.0 0.0 0.0 3.1413953765921327 0.0 30 0.0 0.0 0.0 3.2602704447058195 0.0 31 0.0 0.0 0.0 3.3554333129712015 0.0 32 0.0 0.0 0.0 3.459442454469174 0.0 33 0.0 0.0 0.0 3.559473390253082 0.0 34 2.6172406013581384E-5 0.0 0.0 3.664634117615652 0.0 35 2.6172406013581384E-5 5.496205262852091E-4 0.0 3.772857016481811 0.0 36 2.6172406013581384E-5 5.496205262852091E-4 0.0 3.876499744295593 0.0 37 2.6172406013581384E-5 5.496205262852091E-4 0.0 3.987601607823246 0.0 38 5.234481202716277E-5 5.496205262852091E-4 0.0 4.10155626360638 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 46540 0.0 43.116028 1 CGACGGT 145 0.0 42.482758 28 GTTTTTT 51245 0.0 38.43185 2 TAGGGCG 1610 0.0 38.260868 5 CGTTCGA 70 0.0 37.714287 14 AGGGCGA 4025 0.0 37.714287 6 GACCGAT 2505 0.0 36.88623 9 TAGGGAC 4325 0.0 36.62428 5 TAGGGAT 7415 0.0 36.523266 5 GGGCGAT 7655 0.0 36.4128 7 CGCCGGT 315 0.0 36.317463 28 CGGTCTA 165 0.0 36.0 31 AGGGATC 5400 0.0 35.89259 6 ACGGGAT 2215 0.0 35.85553 5 TACGGGA 1580 0.0 35.78481 4 GCGATCG 345 0.0 35.710148 9 CGTAAGG 500 0.0 35.64 2 TAAGGGA 6150 0.0 35.62927 4 GGACCGA 2615 0.0 35.50287 8 GTAGGGA 5885 0.0 35.40187 4 >>END_MODULE