##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547187_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2101146 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.63683770666103 31.0 30.0 31.0 28.0 33.0 2 30.97569136080977 31.0 31.0 33.0 28.0 34.0 3 31.097079403335133 31.0 31.0 34.0 28.0 34.0 4 34.94959417384608 35.0 35.0 37.0 32.0 37.0 5 34.77400332961155 35.0 35.0 37.0 32.0 37.0 6 34.79889974328295 35.0 35.0 37.0 32.0 37.0 7 35.40481527699646 35.0 35.0 37.0 33.0 37.0 8 34.35891032798292 35.0 35.0 37.0 32.0 37.0 9 36.46221728523387 39.0 37.0 39.0 32.0 39.0 10 35.929405667193045 38.0 35.0 39.0 30.0 39.0 11 35.73048279367545 37.0 35.0 39.0 30.0 39.0 12 35.3945880010242 37.0 35.0 39.0 30.0 39.0 13 35.27846280077634 37.0 34.0 39.0 30.0 39.0 14 36.190031535171755 38.0 35.0 40.0 30.0 41.0 15 36.32214134572276 38.0 35.0 40.0 30.0 41.0 16 36.36395662176736 38.0 35.0 40.0 30.0 41.0 17 36.25089498778286 38.0 34.0 40.0 30.0 41.0 18 36.12869833890648 38.0 34.0 40.0 30.0 41.0 19 36.05391771918753 38.0 34.0 40.0 30.0 41.0 20 35.87805749814625 38.0 34.0 40.0 30.0 41.0 21 35.71599070221679 37.0 34.0 40.0 29.0 41.0 22 35.664890017162065 37.0 34.0 40.0 29.0 41.0 23 35.54561939056115 37.0 34.0 40.0 29.0 41.0 24 35.42334135752584 37.0 34.0 40.0 28.0 41.0 25 35.21677170458407 37.0 33.0 40.0 27.0 41.0 26 35.031927814630684 37.0 33.0 40.0 27.0 41.0 27 34.85224111032741 36.0 33.0 40.0 26.0 41.0 28 34.83011270992116 36.0 33.0 40.0 26.0 41.0 29 34.62816624832353 36.0 33.0 40.0 25.0 41.0 30 34.575225614973924 36.0 33.0 40.0 25.0 41.0 31 34.479460732381284 36.0 33.0 40.0 25.0 41.0 32 34.17268671477375 36.0 33.0 40.0 24.0 41.0 33 33.90858655229099 36.0 32.0 40.0 23.0 41.0 34 33.60447108387518 36.0 32.0 40.0 21.0 41.0 35 33.38097162215286 36.0 32.0 40.0 20.0 41.0 36 33.290688034053794 36.0 31.0 40.0 19.0 41.0 37 33.29867129652104 36.0 31.0 40.0 19.0 41.0 38 33.27865460087019 36.0 31.0 40.0 19.0 41.0 39 33.16713355473632 36.0 31.0 40.0 18.0 41.0 40 33.068257988735674 36.0 31.0 40.0 18.0 41.0 41 33.05068043819897 36.0 31.0 40.0 18.0 41.0 42 32.889173812766934 35.0 31.0 40.0 18.0 41.0 43 32.90843282665745 35.0 31.0 40.0 18.0 41.0 44 32.602202321970964 35.0 31.0 39.0 18.0 41.0 45 32.5244485628319 35.0 31.0 39.0 18.0 41.0 46 32.45371287859102 35.0 30.0 39.0 18.0 41.0 47 32.37808510212998 35.0 30.0 39.0 18.0 41.0 48 32.374145347348545 35.0 30.0 39.0 18.0 41.0 49 32.3429461827022 35.0 30.0 39.0 18.0 40.0 50 31.797113099232515 35.0 30.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 5.0 12 4.0 13 19.0 14 39.0 15 138.0 16 357.0 17 913.0 18 2069.0 19 4057.0 20 6822.0 21 10372.0 22 15006.0 23 21045.0 24 28757.0 25 39655.0 26 51634.0 27 60606.0 28 65801.0 29 71671.0 30 81992.0 31 96429.0 32 114105.0 33 139724.0 34 184488.0 35 201709.0 36 194651.0 37 223883.0 38 254220.0 39 230971.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.55528173672843 23.385809458267058 25.992291825508556 18.06661697949595 2 35.86190583614846 24.4760240364068 26.569405457783514 13.092664669661222 3 28.362998097228846 25.069319314317045 33.08970438037147 13.477978208082636 4 25.363111368748292 27.537781762904622 32.47075643482176 14.628350433525325 5 22.5365586208669 30.988232136177114 31.911157054293227 14.564052188662757 6 20.879177363210363 39.642414187305405 29.61821786777311 9.860190581711123 7 84.59635836824285 3.6265447522447274 10.32051080695963 1.456586072552788 8 82.61358325409086 5.900637080907276 9.844056529151235 1.6417231358506263 9 79.50018704078632 5.510802200323061 11.950764011639363 3.0382467472512618 10 38.25064988344456 30.3466774798134 18.62145705248469 12.781215584257351 11 32.440630018094886 24.643694441033606 26.79923241887998 16.116443121991523 12 29.274215118797077 21.749702305313388 31.26846016411996 17.707622411769577 13 24.25209861665967 25.91557178796714 31.75367156780157 18.07865802757162 14 21.159262611927016 27.58009200693336 32.59664011924921 18.664005261890416 15 20.971745894859282 22.813550319682687 37.65721182630812 18.55749195914991 16 23.95402318544261 21.233936147226323 35.35042305484721 19.461617612483852 17 23.321939551083076 21.384711010086875 31.663244724545557 23.630104714284492 18 24.622515522481542 22.080950110082785 33.2910230893046 20.005511278131078 19 27.08050749448158 24.29550350142256 28.893565701764658 19.730423302331204 20 28.770632788011874 23.303521030904086 28.836644383588766 19.089201797495274 21 26.221024145870874 24.50843492075277 30.069400222545223 19.201140710831137 22 25.25588416987682 22.12663946246477 30.54423633579009 22.073240031868323 23 23.500413583825207 24.887846917824845 29.962077837522948 21.649661660826997 24 23.54643608773498 23.335598763722274 33.397488798969704 19.720476349573044 25 23.23498700233111 24.429097264064467 30.900613284369577 21.435302449234847 26 21.529060807768712 26.093474703804496 30.142836337884184 22.23462815054261 27 21.351015112705163 25.062085166856562 30.912416367068257 22.674483353370018 28 20.677715875051046 25.854129127628443 32.52839164912862 20.939763348191892 29 22.519853451402234 24.138969876438857 32.26410730144407 21.077069370714838 30 23.115385603856183 24.684481706649606 32.32807239477885 19.87206029471536 31 26.276850823312607 24.660447203573668 29.021257923057224 20.04144405005649 32 26.678631565821696 24.411440233091845 28.71061791993512 20.199310281151334 33 26.622709702229162 24.86800060538392 27.790691365569074 20.71859832681784 34 22.739685866665145 25.911383597332122 29.91662645051796 21.43230408548478 35 22.950332818376257 27.221145032282383 29.043769447720436 20.784752701620928 36 25.64038862601647 27.864222667058836 26.207745677834858 20.28764302908984 37 23.834374193892284 28.77415467559132 27.007166565293417 20.384304565222976 38 23.72609994736206 28.757163947674268 26.6762519120518 20.840484192911866 39 23.765602199942318 27.902773058131135 26.1954666643822 22.136158077544348 40 24.76710328554037 25.56433489153062 27.586755037489063 22.081806785439944 41 21.89048262234038 26.121982955967837 27.796640499993813 24.190893921697967 42 22.874326676965808 26.477788787642552 26.295031378114608 24.35285315727703 43 22.522185512096733 25.423744946805222 27.917764876881474 24.136304664216578 44 22.366698934771787 26.091570980788582 28.81175320515566 22.72997687928397 45 22.367127272450368 27.995056031327664 26.933302112275868 22.704514583946096 46 22.711748731406576 27.687747543483415 27.782790915053024 21.81771281005699 47 21.862640673232608 27.171219896189985 28.406783726594913 22.559355703982494 48 22.98883561637316 25.950552698384595 29.24975227804255 21.81085940719969 49 23.30261676247153 25.574757775042762 29.50570783753247 21.61691762495324 50 21.827136238985773 27.553439884710535 28.76354141977759 21.855882456526103 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1099.0 1 2053.0 2 3007.0 3 19866.5 4 36726.0 5 26646.5 6 16567.0 7 16666.0 8 16765.0 9 17021.5 10 17278.0 11 17332.0 12 17386.0 13 16762.0 14 16138.0 15 15594.5 16 15051.0 17 14547.5 18 14044.0 19 13419.5 20 12795.0 21 12955.5 22 13116.0 23 13145.5 24 13175.0 25 14418.5 26 15662.0 27 18267.5 28 20873.0 29 23455.0 30 26037.0 31 30705.0 32 35373.0 33 41942.0 34 48511.0 35 54637.0 36 60763.0 37 66263.0 38 71763.0 39 79754.0 40 87745.0 41 96227.5 42 104710.0 43 111951.0 44 119192.0 45 123257.0 46 127322.0 47 131052.5 48 134783.0 49 139262.0 50 143741.0 51 138864.5 52 133988.0 53 128654.0 54 123320.0 55 117391.0 56 111462.0 57 110978.0 58 110494.0 59 106001.5 60 101509.0 61 96540.0 62 91571.0 63 82248.5 64 72926.0 65 62873.5 66 52821.0 67 45013.0 68 37205.0 69 32704.5 70 28204.0 71 23896.5 72 19589.0 73 16004.0 74 12419.0 75 9944.0 76 7469.0 77 5853.5 78 4238.0 79 3288.0 80 2338.0 81 1764.5 82 1191.0 83 809.5 84 428.0 85 289.5 86 151.0 87 128.5 88 106.0 89 88.5 90 71.0 91 45.5 92 20.0 93 11.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2101146.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.74212428434618 #Duplication Level Percentage of deduplicated Percentage of total 1 77.96574061060014 20.84969525329765 2 5.531605694462039 2.9585377394660184 3 2.3021394469729866 1.846922976325428 4 1.414604041421543 1.5131806835533317 5 1.0852627874135832 1.4511116171095007 6 0.8504754324944942 1.36461118299305 7 0.7220656560699146 1.3516698661255735 8 0.6170547418490379 1.3201083677417695 9 0.5544152186843113 1.334361661486994 >10 8.222362987646273 51.232543919269936 >50 0.6899253402459675 11.538986747810046 >100 0.041985279087935916 1.7466593928955252 >500 0.0018175100398807196 0.2909440191359796 >1k 3.635020079761439E-4 0.19086821970380755 >5k 0.0 0.0 >10k+ 1.8175100398807196E-4 1.0097983530853847 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20776 0.9887937344668101 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 2142 0.10194436750230589 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00975658045656989 0.0 2 0.0 0.0 0.0 0.04145356867157256 0.0 3 0.0 0.0 0.0 0.0772435613707948 0.0 4 0.0 0.0 0.0 0.11013037647074501 0.0 5 0.0 0.0 0.0 0.1695741276427245 0.0 6 0.0 0.0 0.0 0.32506070496767003 0.0 7 0.0 0.0 0.0 0.4088245176679774 0.0 8 4.759307539790191E-5 0.0 0.0 0.6345108812048282 0.0 9 4.759307539790191E-5 0.0 0.0 0.7813355188073556 0.0 10 4.759307539790191E-5 0.0 0.0 0.9714222619465758 0.0 11 4.759307539790191E-5 0.0 0.0 1.084455816016593 0.0 12 4.759307539790191E-5 0.0 0.0 1.1854959150863387 0.0 13 4.759307539790191E-5 0.0 0.0 1.2430835363177999 0.0 14 4.759307539790191E-5 0.0 0.0 1.2806344728067445 0.0 15 4.759307539790191E-5 0.0 0.0 1.3088095734423024 0.0 16 4.759307539790191E-5 0.0 0.0 1.3520240859035975 0.0 17 4.759307539790191E-5 0.0 0.0 1.3971899144562063 0.0 18 4.759307539790191E-5 0.0 0.0 1.4725773458864828 0.0 19 4.759307539790191E-5 0.0 0.0 1.5085577108872967 0.0 20 4.759307539790191E-5 0.0 0.0 1.551058327217623 0.0 21 4.759307539790191E-5 0.0 0.0 1.5982706580123418 0.0 22 4.759307539790191E-5 0.0 0.0 1.649195248688097 0.0 23 4.759307539790191E-5 0.0 0.0 1.7048315538282441 0.0 24 4.759307539790191E-5 0.0 0.0 1.750996836964209 0.0 25 4.759307539790191E-5 0.0 0.0 1.793687825596127 0.0 26 4.759307539790191E-5 0.0 0.0 1.8402338533352751 0.0 27 4.759307539790191E-5 0.0 0.0 1.8914440024634176 0.0 28 4.759307539790191E-5 0.0 0.0 1.9409408008772355 0.0 29 4.759307539790191E-5 0.0 0.0 1.9949113483784564 0.0 30 4.759307539790191E-5 0.0 0.0 2.0796746156621198 0.0 31 4.759307539790191E-5 0.0 0.0 2.1414504275285964 0.0 32 4.759307539790191E-5 0.0 0.0 2.2122213306452765 0.0 33 4.759307539790191E-5 0.0 0.0 2.2786136708253495 0.0 34 4.759307539790191E-5 0.0 0.0 2.3486230847356633 0.0 35 4.759307539790191E-5 0.0 0.0 2.4275324037453845 0.0 36 4.759307539790191E-5 0.0 0.0 2.5003498091041747 0.0 37 4.759307539790191E-5 0.0 0.0 2.580734513451231 0.0 38 4.759307539790191E-5 0.0 0.0 2.681155902540804 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAC 20 7.857971E-4 44.000004 12 TACGATC 20 7.857971E-4 44.000004 11 CGTTTTT 15705 0.0 42.23496 1 TCGATAG 130 0.0 38.923077 1 TATACTA 1695 0.0 37.120945 44 GTTTTTT 18015 0.0 36.91701 2 AGGGCGA 2410 0.0 36.697098 6 GTTGATC 1030 0.0 36.524273 16 CGTCATA 260 0.0 36.384613 38 GGGCGAT 4740 0.0 35.87764 7 AAGGGAT 2515 0.0 35.689857 5 CATACGA 395 0.0 35.64557 18 CGCATCG 125 0.0 35.2 21 TCGATCG 25 0.0023531872 35.2 12 ATAGGGC 995 0.0 34.934673 4 CGACCCG 825 0.0 34.933334 32 ATTATAC 1815 0.0 34.909092 42 CGGTAGT 555 0.0 34.882885 12 GCGATAC 120 0.0 34.833332 9 TAGCATA 1060 0.0 34.660378 30 >>END_MODULE