##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547185_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5299099 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.581850424006042 31.0 30.0 31.0 27.0 34.0 2 30.927496542336726 31.0 31.0 33.0 28.0 34.0 3 31.018095717781456 31.0 31.0 34.0 28.0 34.0 4 34.85761711566438 35.0 35.0 37.0 32.0 37.0 5 34.67704679606854 35.0 35.0 37.0 32.0 37.0 6 34.7154821980114 35.0 35.0 37.0 31.0 37.0 7 35.4510074259794 35.0 35.0 37.0 35.0 37.0 8 34.43684954744193 36.0 35.0 37.0 33.0 37.0 9 36.53976194821044 39.0 37.0 39.0 32.0 39.0 10 35.90037438440007 38.0 35.0 39.0 30.0 39.0 11 35.65113597613481 37.0 35.0 39.0 30.0 39.0 12 35.49128616015666 37.0 35.0 39.0 30.0 39.0 13 35.401860391738296 37.0 35.0 39.0 30.0 39.0 14 36.36646361957004 38.0 35.0 40.0 30.0 41.0 15 36.51010936010065 38.0 35.0 40.0 30.0 41.0 16 36.55267376586095 38.0 35.0 40.0 30.0 41.0 17 36.46910880510064 38.0 35.0 40.0 30.0 41.0 18 36.299105187504516 38.0 35.0 40.0 30.0 41.0 19 36.18636413473309 37.0 34.0 40.0 30.0 41.0 20 35.9533947186116 37.0 34.0 40.0 30.0 41.0 21 35.79826759228314 37.0 34.0 40.0 29.0 41.0 22 35.74357055793825 37.0 34.0 40.0 29.0 41.0 23 35.62150754307478 37.0 34.0 40.0 29.0 41.0 24 35.49322573516743 37.0 34.0 40.0 29.0 41.0 25 35.30891157157094 37.0 34.0 40.0 27.0 41.0 26 35.150929431588274 37.0 33.0 40.0 27.0 41.0 27 34.96253646138712 37.0 33.0 40.0 27.0 41.0 28 34.96735407283389 37.0 33.0 40.0 27.0 41.0 29 34.809473082122075 36.0 33.0 40.0 26.0 41.0 30 34.74416801799702 37.0 33.0 40.0 25.0 41.0 31 34.59488547015257 37.0 33.0 40.0 25.0 41.0 32 34.16133459669276 37.0 33.0 40.0 23.0 41.0 33 33.79007808685967 37.0 33.0 40.0 21.0 41.0 34 33.50581655485206 37.0 32.0 40.0 18.0 41.0 35 33.19036236160147 37.0 31.0 40.0 18.0 41.0 36 33.04542979853745 37.0 31.0 40.0 16.0 41.0 37 33.00649242446688 37.0 31.0 40.0 15.0 41.0 38 33.018580517178485 37.0 31.0 40.0 15.0 41.0 39 32.90899773716249 37.0 31.0 40.0 15.0 41.0 40 32.877012110926785 37.0 31.0 40.0 15.0 41.0 41 32.89104411900966 37.0 31.0 40.0 15.0 41.0 42 32.73216258084629 36.0 31.0 40.0 15.0 41.0 43 32.78219693574323 36.0 31.0 40.0 15.0 41.0 44 32.49665103444944 36.0 30.0 40.0 13.0 41.0 45 32.444034542476 36.0 30.0 40.0 13.0 41.0 46 32.3968208557719 36.0 30.0 40.0 12.0 41.0 47 32.354051132088685 36.0 30.0 40.0 12.0 41.0 48 32.35132727280619 36.0 30.0 40.0 12.0 41.0 49 32.34808294768601 36.0 30.0 40.0 12.0 41.0 50 31.800945217290714 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 3.0 12 6.0 13 20.0 14 76.0 15 349.0 16 1057.0 17 2890.0 18 6544.0 19 12400.0 20 20126.0 21 29981.0 22 42294.0 23 58683.0 24 81279.0 25 113043.0 26 148829.0 27 166205.0 28 167427.0 29 173370.0 30 194138.0 31 226523.0 32 269258.0 33 322144.0 34 417605.0 35 478212.0 36 463961.0 37 544964.0 38 666635.0 39 691074.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.90030946770385 22.415131327042577 27.14391635257239 20.54064285268118 2 35.47952208479215 24.443136465274566 27.612562060078517 12.464779389854765 3 25.26614430113497 24.955657556124162 37.161600490951386 12.616597651789482 4 22.62943190908492 27.57991500064445 36.20940088116867 13.581252209101963 5 20.225853489432826 31.499071823342046 35.51439593787548 12.760678749349655 6 18.549927072507987 39.634568065250335 32.69342580691548 9.122079055326198 7 83.52842624755642 2.749561765122712 12.617843146542459 1.104168840778404 8 81.96610404900908 4.952502302749958 11.886586757484622 1.1948068907563343 9 78.50087345037335 5.427205643827375 13.904967618079981 2.1669532877192896 10 32.84881071291553 36.45402737333271 20.536038296321696 10.161123617430057 11 24.55994877619761 24.892873297894607 35.27365689903132 15.273521026876455 12 24.210172333070208 23.413282144757062 35.882515121910345 16.494030400262385 13 19.907365384190783 28.68727306283578 36.17594236303191 15.229419189941535 14 17.78173987691115 31.06360156698337 34.922182053968044 16.232476502137438 15 16.545567463449917 26.010138704711878 41.93871448712319 15.505579344715018 16 18.50301343681256 24.290940780687436 40.626774476189254 16.57927130631075 17 19.170277815153106 23.861886709419846 35.43436346443046 21.533472010996586 18 19.695423693726045 24.806537866154226 37.50060151735229 17.997436922767438 19 22.41007386350019 26.073583452583165 33.84343262882992 17.672910055086724 20 23.639018633167638 25.56576127375616 33.602184069405006 17.193036023671194 21 21.182884109166483 26.670854800032988 35.11293146249957 17.03332962830096 22 21.024121270427294 24.27618355497793 34.766551823243915 19.933143351350864 23 18.18897891886904 28.090190426712162 34.251464258357885 19.469366396060916 24 17.900458172228902 26.05718443833565 38.93367532857944 17.108682060856005 25 17.80915963260924 27.54670180723176 36.6795940215497 17.9645445386093 26 17.897665244601015 29.790102053198098 33.97490780979936 18.33732489240152 27 17.942370957779804 28.81042607431943 35.29786856218387 17.949334405716897 28 17.120646358937623 27.5471924566799 37.92491893433204 17.407242250050434 29 17.578478907452002 25.265049775442954 37.91029380655089 19.24617751055415 30 18.17325926539587 27.510091809947312 35.94892263760311 18.367726287053703 31 21.057277850442123 26.67600661923848 33.628641397339436 18.638074132979966 32 21.385163779729346 26.702501689438147 33.40705655810544 18.50527797272706 33 21.001023004099377 27.88187199371063 32.410245590807044 18.706859411382954 34 18.297148251051734 28.18905629051278 33.099570323181354 20.414225135254124 35 19.40467615343665 27.891326431153672 32.612374292308935 20.09162312310074 36 22.3719730467387 27.540342235538535 30.920256443595413 19.167428274127357 37 19.56853419798347 30.08435962415497 31.774571488473796 18.572534689387762 38 19.71133205852542 30.075395836160073 30.99687324203605 19.216398863278457 39 19.431001383442734 30.205606651243922 30.973774975708135 19.389616989605212 40 21.21064354525175 28.379635858850722 30.5253968646368 19.884323731260732 41 18.844562066117277 27.643378619648356 31.31428569271871 22.19777362151566 42 20.01376082990712 28.832694010812027 29.843016709066955 21.310528450213894 43 19.891324921463063 28.660777992636106 30.58127428832713 20.8666227975737 44 19.68147792671924 29.693802663433917 31.20775814907402 19.416961260772823 45 18.80295121868831 31.203361175173367 29.397186200899434 20.59650140523889 46 19.949013973884995 30.778194557225675 29.980568394740313 19.29222307414902 47 19.845449198061786 28.918368952910672 30.56627173789356 20.669910111133987 48 20.376237545288358 27.72131639737246 31.31885250681295 20.58359355052623 49 19.92682152192288 27.513167804564514 31.872569280173856 20.687441393338755 50 19.15446380601683 29.846526739734436 30.895818326851415 20.10319112739732 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3271.0 1 4184.5 2 5098.0 3 51677.0 4 98256.0 5 76203.5 6 54151.0 7 55197.0 8 56243.0 9 57921.0 10 59599.0 11 59884.5 12 60170.0 13 59458.0 14 58746.0 15 56695.5 16 54645.0 17 53019.5 18 51394.0 19 50840.0 20 50286.0 21 49453.0 22 48620.0 23 49885.5 24 51151.0 25 61292.0 26 71433.0 27 79805.0 28 88177.0 29 100326.5 30 112476.0 31 131272.0 32 150068.0 33 169701.5 34 189335.0 35 209758.5 36 230182.0 37 253268.0 38 276354.0 39 297365.5 40 318377.0 41 348321.5 42 378266.0 43 401472.0 44 424678.0 45 431309.0 46 437940.0 47 425417.0 48 412894.0 49 397069.5 50 381245.0 51 346083.5 52 310922.0 53 277306.5 54 243691.0 55 214631.5 56 185572.0 57 163947.0 58 142322.0 59 123452.5 60 104583.0 61 88617.5 62 72652.0 63 59067.0 64 45482.0 65 37035.5 66 28589.0 67 22841.5 68 17094.0 69 13471.5 70 9849.0 71 8248.5 72 6648.0 73 5153.0 74 3658.0 75 2978.0 76 2298.0 77 1840.5 78 1383.0 79 1143.0 80 903.0 81 559.0 82 215.0 83 168.5 84 122.0 85 76.5 86 31.0 87 23.0 88 15.0 89 12.5 90 10.0 91 6.5 92 3.0 93 1.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5299099.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.96423618485113 #Duplication Level Percentage of deduplicated Percentage of total 1 82.17911954212236 20.51538949712658 2 6.232552520306913 3.1118182630286193 3 2.2429367818448576 1.6797961070899485 4 1.2099906917274215 1.20825973639019 5 0.8111503902090536 1.0124874961306485 6 0.6282146278132505 0.9409739006105002 7 0.47504744360100765 0.8301437606745713 8 0.4078418666258213 0.8145168547614046 9 0.3447713827563221 0.7746258806015882 >10 3.5588457053527573 20.24426411489864 >50 1.1648708979341946 21.16746218025782 >100 0.7416398202236317 25.934708316071887 >500 0.002012219660560281 0.31461644240993625 >1k 9.287167589233643E-4 0.3843444391569642 >5k 0.0 0.0 >10k+ 7.73930632436137E-5 1.0665930107907409 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55205 1.0417808763338825 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022758585940742003 0.0 2 0.0 0.0 0.0 0.08537300397671378 0.0 3 0.0 0.0 0.0 0.15144083928230062 0.0 4 0.0 0.0 0.0 0.22852941603846239 0.0 5 0.0 0.0 0.0 0.3674398232605203 0.0 6 0.0 0.0 0.0 0.6922686290631671 0.0 7 0.0 0.0 0.0 0.8900003566644066 0.0 8 0.0 0.0 0.0 1.3465496681605684 0.0 9 0.0 0.0 0.0 1.5897042119801876 0.0 10 0.0 0.0 0.0 1.8942088079501818 0.0 11 0.0 0.0 0.0 2.076032170752047 0.0 12 0.0 0.0 0.0 2.2654983422653547 0.0 13 0.0 0.0 0.0 2.375120751659858 0.0 14 0.0 0.0 0.0 2.4304131702389404 0.0 15 0.0 0.0 0.0 2.4778174553825094 0.0 16 0.0 0.0 0.0 2.5598125266200915 0.0 17 0.0 0.0 0.0 2.653149148562803 0.0 18 0.0 0.0 0.0 2.8022310962674974 0.0 19 0.0 0.0 0.0 2.873299781717609 0.0 20 0.0 0.0 0.0 2.9532567706321395 0.0 21 0.0 0.0 0.0 3.043083361907373 0.0 22 0.0 0.0 0.0 3.1432702049914525 0.0 23 0.0 0.0 0.0 3.2637435156429424 0.0 24 0.0 0.0 0.0 3.358042565349317 0.0 25 0.0 0.0 0.0 3.4447742908747316 0.0 26 0.0 0.0 0.0 3.5252219292374045 0.0 27 0.0 0.0 0.0 3.614086092748975 0.0 28 0.0 0.0 0.0 3.7070264209066486 0.0 29 0.0 0.0 0.0 3.81261040792029 0.0 30 0.0 0.0 0.0 3.9492374080952253 0.0 31 0.0 0.0 0.0 4.065747780896337 0.0 32 0.0 0.0 0.0 4.177464886011754 0.0 33 0.0 0.0014153349465635572 0.0 4.293031702181824 0.0 34 0.0 0.0014153349465635572 0.0 4.411731126366954 0.0 35 0.0 0.0014153349465635572 0.0 4.541338065206935 0.0 36 0.0 0.0014153349465635572 0.0 4.6708883906490515 0.0 37 0.0 0.0014153349465635572 0.0 4.800740654213103 0.0 38 0.0 0.0014153349465635572 0.0 4.936726035878929 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 56310 0.0 43.175632 1 GTTTTTT 62940 0.0 38.12075 2 CGACGGT 430 0.0 37.860466 28 AGGGCGA 4500 0.0 37.84 6 TAGGGAT 10470 0.0 37.38109 5 ACGGGAT 2855 0.0 37.064796 5 CGGTCTA 455 0.0 36.747253 31 GGGCGAT 9305 0.0 36.670605 7 GACCGAT 3625 0.0 36.59586 9 CGTTAGG 710 0.0 36.25352 2 GGCGATA 1935 0.0 36.15504 8 AGGGATT 11630 0.0 36.03611 6 CGTAAGG 810 0.0 35.851852 2 CGAGGGA 3905 0.0 35.661972 4 TAGGGCG 1650 0.0 35.6 5 AAGGGAT 10550 0.0 35.575356 5 CACGACG 470 0.0 35.574467 26 TCTAGCG 155 0.0 35.48387 1 AGGGATC 7225 0.0 35.3827 6 GGGACCG 4275 0.0 35.148537 7 >>END_MODULE