##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547184_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3275107 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.68860406698163 31.0 30.0 31.0 28.0 33.0 2 31.012963545923842 31.0 31.0 33.0 28.0 34.0 3 31.159199989496525 31.0 31.0 34.0 28.0 34.0 4 35.00088546725344 35.0 35.0 37.0 32.0 37.0 5 34.82594309132495 35.0 35.0 37.0 32.0 37.0 6 34.853649667018516 35.0 35.0 37.0 32.0 37.0 7 35.44891327214653 35.0 35.0 37.0 35.0 37.0 8 34.40576506355365 36.0 35.0 37.0 33.0 37.0 9 36.51318506540397 39.0 37.0 39.0 32.0 39.0 10 35.98761628246039 38.0 35.0 39.0 30.0 39.0 11 35.803165820231214 37.0 35.0 39.0 30.0 39.0 12 35.42551953264428 37.0 35.0 39.0 30.0 39.0 13 35.26723096375172 37.0 34.0 39.0 30.0 39.0 14 36.17794258324995 38.0 35.0 40.0 30.0 41.0 15 36.32573897585636 38.0 35.0 40.0 30.0 41.0 16 36.39526036859254 38.0 35.0 40.0 30.0 41.0 17 36.3063069389794 38.0 34.0 40.0 30.0 41.0 18 36.19033454479502 38.0 34.0 40.0 30.0 41.0 19 36.160652766459236 38.0 34.0 40.0 30.0 41.0 20 36.022191336038794 38.0 34.0 40.0 30.0 41.0 21 35.83797231662965 38.0 34.0 40.0 29.0 41.0 22 35.80589183803766 38.0 34.0 40.0 29.0 41.0 23 35.71823821328586 37.0 34.0 40.0 29.0 41.0 24 35.59453446864484 37.0 34.0 40.0 29.0 41.0 25 35.39533334330756 37.0 34.0 40.0 27.0 41.0 26 35.22640909136709 37.0 34.0 40.0 27.0 41.0 27 35.0415458181977 37.0 33.0 40.0 27.0 41.0 28 35.012375778867685 37.0 33.0 40.0 27.0 41.0 29 34.83799857531372 37.0 33.0 40.0 26.0 41.0 30 34.83783552720568 37.0 33.0 40.0 26.0 41.0 31 34.76809887432685 37.0 33.0 40.0 25.0 41.0 32 34.50932381751192 37.0 33.0 40.0 24.0 41.0 33 34.316311497609085 37.0 33.0 40.0 24.0 41.0 34 34.106619722653335 37.0 33.0 40.0 23.0 41.0 35 33.88939720137388 36.0 32.0 40.0 23.0 41.0 36 33.849971924581396 36.0 32.0 40.0 22.0 41.0 37 33.8644435128379 36.0 32.0 40.0 23.0 41.0 38 33.864718618353535 36.0 32.0 40.0 23.0 41.0 39 33.74980878487329 36.0 32.0 40.0 22.0 41.0 40 33.651466349038365 36.0 32.0 40.0 22.0 41.0 41 33.64187979201901 36.0 32.0 40.0 22.0 41.0 42 33.48279460793189 36.0 32.0 40.0 21.0 41.0 43 33.50377773917005 36.0 32.0 40.0 22.0 41.0 44 33.21237351939952 35.0 31.0 40.0 20.0 41.0 45 33.13455621449925 35.0 31.0 39.0 20.0 41.0 46 33.06971100486182 35.0 31.0 39.0 20.0 41.0 47 32.98565115582483 35.0 31.0 39.0 20.0 41.0 48 32.962456188454304 35.0 31.0 39.0 20.0 41.0 49 32.942209827037715 35.0 31.0 39.0 20.0 41.0 50 32.38704262181358 35.0 30.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 8.0 12 9.0 13 35.0 14 46.0 15 172.0 16 473.0 17 1193.0 18 2684.0 19 5111.0 20 8534.0 21 13474.0 22 19726.0 23 27734.0 24 38950.0 25 52481.0 26 68609.0 27 82471.0 28 92443.0 29 105201.0 30 123789.0 31 147715.0 32 177621.0 33 217986.0 34 295513.0 35 324558.0 36 307656.0 37 357804.0 38 412899.0 39 390210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.75556676468891 23.241042201063966 26.348482660261176 15.654908373985949 2 34.173875845888396 25.02458698295964 27.376998675157786 13.424538495994176 3 29.327438767649422 25.663558473051413 31.213087083872377 13.795915675426787 4 25.69778636239976 28.226314437971034 30.904486479373038 15.171412720256164 5 22.63309259819603 31.643363102335282 30.586634268742973 15.136910030725714 6 21.136591873181548 40.92599112029012 28.024061503944758 9.913355502583581 7 86.72562453684719 3.6137750613949406 8.137199792251062 1.523400609506804 8 84.468079974181 5.888174035229994 7.8332097241403105 1.8105362664486992 9 81.32839629361727 5.589191437104192 9.8699676071652 3.212444662113329 10 39.68774149974337 30.27085832615545 16.77606258360414 13.265337590497042 11 33.703570600899454 25.45147379917664 24.65223273621289 16.19272286371102 12 30.619915624130755 22.872321423391664 28.727244636587447 17.780518315890138 13 24.882820622349133 27.270498337916898 29.498150747441226 18.34853029229274 14 21.119401595123456 29.678511266960133 30.83019883014509 18.371888307771318 15 20.20056138623868 23.527536657580956 37.841847609864345 18.430054346316012 16 23.60188537351604 22.04025700534364 35.19414785532198 19.16370976581834 17 23.12532079104591 21.7684185585387 30.02301909525399 25.083241555161408 18 24.34696026725234 23.286750631353417 32.08982179818858 20.276467303205667 19 27.899943421695838 25.013869775857707 27.195477888203346 19.890708914243106 20 29.055814054319445 24.63898126076492 27.020430172205064 19.284774512710577 21 26.32784211325004 25.64426139359722 28.97102293146453 19.056873561688214 22 25.494922761302153 23.614342981771284 28.330280506865886 22.560453750060685 23 23.435325929809316 26.27340114384049 28.25880192616608 22.032471000184117 24 23.589214031785833 24.093930366244525 32.26416724705483 20.052688354914817 25 23.434135129020213 24.927948918920816 30.140603039839615 21.497312912219357 26 21.339486007632726 27.296726488630753 28.641873380014758 22.72191412372176 27 21.64365927586488 26.378130546574507 29.812796955946787 22.16541322161383 28 20.988993642039784 26.500508227670117 31.77633585711856 20.734162273171535 29 22.796659773253207 25.260029672312996 30.934989299586242 21.00832125484755 30 23.2902619670136 25.628658849924594 30.4848971346585 20.596182048403307 31 26.819032172078654 24.730581321465223 27.5399857164972 20.910400789958924 32 27.170074138035794 25.124797449365776 27.663004598017714 20.042123814580716 33 26.913685568135637 25.38408668785478 26.82000923939279 20.882218504616795 34 23.165533217693344 26.43422031707666 29.25299845165364 21.147248013576352 35 23.093718770104303 26.74593532363981 29.060485657415164 21.099860248840724 36 26.2870800862384 27.363014399224205 26.15471799852646 20.195187516010925 37 23.97973562390481 29.074714200177276 26.516843571828343 20.428706604089577 38 24.151913204667817 29.34185051053294 25.378651750919897 21.12758453387935 39 23.655593542439988 28.017069365977964 26.132825584019088 22.194511507562957 40 24.547533866832442 25.620903378118637 27.30289422605124 22.528668528997677 41 21.97677816327833 25.413032307036076 28.218100965861577 24.39208856382402 42 23.343237335451942 26.82123057353546 25.788897889443003 24.046634201569596 43 22.300614911207482 26.00855483500234 27.435347913823882 24.255482339966296 44 22.25298287964332 26.789933886129525 28.182957075906224 22.774126158320936 45 21.85733168412513 28.026259905401563 27.216454302103717 22.899954108369588 46 23.180464027587497 27.37880014301823 27.467927002079627 21.97280882731465 47 22.762767750794097 27.19923349069206 27.604960692887285 22.433038065626558 48 23.132923596084037 25.920313443194377 28.89780394961142 22.048959011110174 49 23.178448826252087 25.564752540909353 29.020364830828427 22.236433802010133 50 21.76301415495738 28.309945293390413 28.19071254771218 21.736328003940024 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2058.0 1 3326.5 2 4595.0 3 23001.5 4 41408.0 5 30103.0 6 18798.0 7 18766.0 8 18734.0 9 19130.0 10 19526.0 11 19653.0 12 19780.0 13 19417.5 14 19055.0 15 18704.5 16 18354.0 17 17468.5 18 16583.0 19 16319.0 20 16055.0 21 16932.0 22 17809.0 23 19152.5 24 20496.0 25 22424.0 26 24352.0 27 29174.5 28 33997.0 29 39774.5 30 45552.0 31 51220.0 32 56888.0 33 67914.5 34 78941.0 35 86529.5 36 94118.0 37 104269.0 38 114420.0 39 128887.5 40 143355.0 41 161422.0 42 179489.0 43 193723.0 44 207957.0 45 215374.5 46 222792.0 47 224424.0 48 226056.0 49 226845.0 50 227634.0 51 219198.5 52 210763.0 53 199393.0 54 188023.0 55 179142.0 56 170261.0 57 166136.5 58 162012.0 59 157536.0 60 153060.0 61 146191.5 62 139323.0 63 126563.5 64 113804.0 65 98048.0 66 82292.0 67 68610.5 68 54929.0 69 47394.0 70 39859.0 71 34906.0 72 29953.0 73 24643.5 74 19334.0 75 14950.5 76 10567.0 77 8432.0 78 6297.0 79 4700.0 80 3103.0 81 2256.5 82 1410.0 83 1056.5 84 703.0 85 523.5 86 344.0 87 241.0 88 138.0 89 107.0 90 76.0 91 51.5 92 27.0 93 20.5 94 14.0 95 12.0 96 10.0 97 6.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3275107.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.697794164309403 #Duplication Level Percentage of deduplicated Percentage of total 1 81.14496288793454 17.60666702212929 2 5.6093664349375505 2.4342175659492202 3 1.9606526716686108 1.2762551429270648 4 1.0679305158657557 0.9268694606015969 5 0.7516170707615036 0.8154216245882142 6 0.5641132309568686 0.7344007662399399 7 0.46438436304554437 0.7053281425740305 8 0.38284917876951885 0.664558614153273 9 0.3330870458149547 0.6504528743001703 >10 5.212153077770139 28.47107851114618 >50 2.0349202806190236 31.051411119131096 >100 0.4700663531549974 13.223981436884557 >500 0.0024535965895047295 0.35597187233234306 >1k 0.0012989629003260332 0.37786193468479384 >5k 0.0 0.0 >10k+ 1.4432921114733703E-4 0.7055239123581734 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22529 0.687885922505738 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012915608558743272 0.0 2 0.0 0.0 0.0 0.0545020361166826 0.0 3 0.0 0.0 0.0 0.09624113044245577 0.0 4 0.0 0.0 0.0 0.14790356467742885 0.0 5 0.0 0.0 0.0 0.2319924204003106 0.0 6 0.0 0.0 0.0 0.4348560214979236 0.0 7 0.0 0.0 0.0 0.5379976898464691 0.0 8 0.0 0.0 0.0 0.7844323864838615 0.0 9 0.0 0.0 0.0 0.9334046185361272 0.0 10 0.0 0.0 0.0 1.1435962244897648 0.0 11 0.0 0.0 0.0 1.2794696478618865 0.0 12 0.0 0.0 0.0 1.4037098635250695 0.0 13 0.0 0.0 0.0 1.4716465752111305 0.0 14 0.0 0.0 0.0 1.5049279305989087 0.0 15 0.0 0.0 0.0 1.5381176859259866 0.0 16 0.0 0.0 0.0 1.5981157256846876 0.0 17 0.0 0.0 0.0 1.658174832150522 0.0 18 0.0 0.0 0.0 1.762201967752504 0.0 19 6.106670713353792E-5 0.0 0.0 1.80778826462769 0.0 20 6.106670713353792E-5 0.0 0.0 1.8597865657518975 0.0 21 6.106670713353792E-5 0.0 0.0 1.9164564699718207 0.0 22 6.106670713353792E-5 0.0 0.0 1.9785918444801955 0.0 23 6.106670713353792E-5 0.0 0.0 2.046864423055491 0.0 24 6.106670713353792E-5 0.0 0.0 2.10527472842872 0.0 25 6.106670713353792E-5 0.0 0.0 2.1579142299778296 0.0 26 6.106670713353792E-5 0.0 0.0 2.209973597809171 0.0 27 6.106670713353792E-5 0.0 0.0 2.266246568432726 0.0 28 6.106670713353792E-5 0.0 0.0 2.32621407483786 0.0 29 6.106670713353792E-5 0.0 0.0 2.387433448739232 0.0 30 6.106670713353792E-5 0.0 0.0 2.478056442125402 0.0 31 6.106670713353792E-5 0.0 0.0 2.5500235564822766 0.0 32 6.106670713353792E-5 0.0 0.0 2.624799739367294 0.0 33 6.106670713353792E-5 0.0 0.0 2.700125522616513 0.0 34 6.106670713353792E-5 0.0 0.0 2.777863440797507 0.0 35 6.106670713353792E-5 0.0 0.0 2.8619522965203883 0.0 36 6.106670713353792E-5 0.0 0.0 2.938255147083744 0.0 37 6.106670713353792E-5 0.0 0.0 3.016878532518174 0.0 38 6.106670713353792E-5 0.0 0.0 3.1162645983780073 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 15965 0.0 42.23614 1 GCGATAC 210 0.0 38.761906 9 CACGACG 430 0.0 38.372093 26 CGGTCTA 465 0.0 37.849464 31 ACGGGTA 455 0.0 37.23077 5 GTTGATC 1980 0.0 35.88889 16 TTGATCC 2000 0.0 35.75 17 AGGGCGA 3455 0.0 35.658466 6 GGTACCT 2055 0.0 35.649635 8 GACCGAT 2150 0.0 35.506977 9 ATAACGC 155 0.0 35.48387 11 GGGCGAT 6475 0.0 35.471813 7 CGTTAGG 490 0.0 35.469387 2 TACGTCT 25 0.002353378 35.2 35 TTAGGGA 3065 0.0 35.171288 4 TAGCATA 2010 0.0 35.13433 30 CGGTAGT 1720 0.0 35.046513 12 GTTTTTT 20115 0.0 34.84564 2 TGCCAGT 2065 0.0 34.6247 24 CGACGGT 490 0.0 34.571426 28 >>END_MODULE