##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547180_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 839628 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.644493751994933 31.0 30.0 31.0 28.0 33.0 2 30.96929949930207 31.0 31.0 33.0 28.0 34.0 3 31.143974474410097 31.0 31.0 34.0 28.0 34.0 4 34.97053933408605 35.0 35.0 37.0 32.0 37.0 5 34.762173248152756 35.0 35.0 37.0 32.0 37.0 6 34.79329893714836 35.0 35.0 37.0 32.0 37.0 7 35.426351908226025 35.0 35.0 37.0 35.0 37.0 8 34.37790902637835 36.0 35.0 37.0 33.0 37.0 9 36.48787558299628 39.0 37.0 39.0 32.0 39.0 10 35.94633814022401 38.0 35.0 39.0 30.0 39.0 11 35.706177021252266 37.0 35.0 39.0 30.0 39.0 12 35.293314420195614 37.0 34.0 39.0 30.0 39.0 13 35.12128228215352 37.0 34.0 39.0 29.0 39.0 14 36.02216219563902 38.0 34.0 40.0 29.0 41.0 15 36.22766153582301 38.0 34.0 40.0 30.0 41.0 16 36.32424954860962 38.0 34.0 40.0 30.0 41.0 17 36.2318741156798 38.0 34.0 40.0 30.0 41.0 18 36.19112749932113 38.0 34.0 40.0 30.0 41.0 19 36.16886406837314 38.0 34.0 40.0 30.0 41.0 20 36.04216510168789 38.0 34.0 40.0 30.0 41.0 21 35.87038188340551 38.0 34.0 40.0 29.0 41.0 22 35.808654547013674 38.0 34.0 40.0 29.0 41.0 23 35.702977985488815 37.0 34.0 40.0 29.0 41.0 24 35.61011066805776 37.0 34.0 40.0 29.0 41.0 25 35.41537442772275 37.0 34.0 40.0 28.0 41.0 26 35.246568718527726 37.0 34.0 40.0 27.0 41.0 27 35.05643570724178 37.0 33.0 40.0 27.0 41.0 28 35.05557580261735 37.0 33.0 40.0 27.0 41.0 29 34.91880570919503 37.0 33.0 40.0 27.0 41.0 30 34.96076953126861 37.0 33.0 40.0 27.0 41.0 31 34.93541901889885 37.0 33.0 40.0 27.0 41.0 32 34.72618826432658 37.0 33.0 40.0 25.0 41.0 33 34.6025728060522 37.0 33.0 40.0 25.0 41.0 34 34.48886888002782 37.0 33.0 40.0 25.0 41.0 35 34.34136546184739 37.0 33.0 40.0 24.0 41.0 36 34.28017407709128 37.0 33.0 40.0 24.0 41.0 37 34.2668681844817 37.0 33.0 40.0 24.0 41.0 38 34.29032261906463 37.0 33.0 40.0 24.0 41.0 39 34.193161733529614 36.0 33.0 40.0 23.0 41.0 40 34.103337430385835 36.0 33.0 40.0 23.0 41.0 41 34.136383017240966 36.0 33.0 40.0 23.0 41.0 42 33.997865721486185 36.0 33.0 40.0 23.0 41.0 43 34.04042980939178 36.0 33.0 40.0 23.0 41.0 44 33.729738646162346 36.0 32.0 40.0 23.0 41.0 45 33.64937924890547 36.0 32.0 40.0 23.0 41.0 46 33.6047130395842 35.0 32.0 39.0 23.0 41.0 47 33.549324224537536 35.0 32.0 39.0 23.0 41.0 48 33.538239553707115 35.0 32.0 39.0 23.0 41.0 49 33.54478888269567 35.0 32.0 39.0 23.0 41.0 50 32.941028646019426 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 5.0 14 16.0 15 38.0 16 104.0 17 263.0 18 582.0 19 1109.0 20 1947.0 21 2996.0 22 4408.0 23 6248.0 24 8660.0 25 11696.0 26 15325.0 27 18516.0 28 22045.0 29 26265.0 30 31367.0 31 38495.0 32 46519.0 33 56749.0 34 76972.0 35 87973.0 36 78478.0 37 90962.0 38 106108.0 39 105778.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.53184029117657 23.047587741237784 28.06695346034196 14.353618507243684 2 30.87045691663451 25.817623995388434 29.31083765667653 14.001081431300527 3 29.8367848618674 26.14610279790574 30.562701577365214 13.454410762861649 4 26.24043028579323 29.336325134464307 28.84420243250582 15.579042147236633 5 22.745191918325737 33.49983564149838 28.86040008194105 14.894572358234836 6 21.392807290847852 41.90998870928554 25.901708852015414 10.795495147851192 7 88.8007546199031 3.8384856150580973 5.8231740723272685 1.5375856927115341 8 86.49759179065015 6.005159427746574 5.575802617349588 1.9214461642536933 9 82.95221217015154 5.972764128876121 7.72687428242031 3.3481494185520253 10 40.63370921408052 32.71651255079631 13.922951592848262 12.726826642274913 11 35.0250348964065 25.21997837137399 23.65488049469527 16.100106237524237 12 31.753824312671803 23.201465410872434 27.042333033200418 18.002377243255346 13 23.32104217582072 30.84187282939588 27.793499025759026 18.043585969024377 14 19.847003673055212 33.47577736807253 28.716645943203417 17.960573015668842 15 19.295688090440052 25.03203799777997 38.07007388986551 17.602200021914467 16 21.545493956847555 22.671945194776736 36.31489183304987 19.467669015325832 17 21.040627515995176 22.44636910631851 29.391111301671693 27.121892076014614 18 22.964455687518758 23.975379572858458 31.838385570752763 21.22177916887002 19 27.569709442753222 25.626706112707055 26.49268485567418 20.310899588865546 20 29.79748174191428 24.46571576936453 25.661483418847393 20.0753190698738 21 25.170075319069873 27.141186334900695 27.414878970210616 20.273859375818816 22 24.95664746768807 24.53241197292134 26.820806357101002 23.690134202289588 23 22.872033805447174 28.3005092731543 26.350002620207995 22.477454301190527 24 21.611594658586895 25.486882285964736 32.73675961259034 20.16476344285803 25 21.70842325410777 26.733029389205697 30.415969929540225 21.142577427146307 26 20.657481646633986 29.88668791417151 27.544221964965438 21.911608474229062 27 21.115660744996596 29.394207911122542 28.15282482242136 21.337306521459503 28 20.376762089877896 28.170689876945502 31.89936495686185 19.55318307631475 29 20.58899893762476 26.12740404083713 31.987737426574625 21.295859594963485 30 22.251044510187846 27.308045944156223 29.92384722758174 20.517062318074196 31 26.339045386766518 26.590823555193488 25.9669758512103 21.10315520682969 32 27.016726455049138 26.51674312910003 27.044953241197295 19.421577174653535 33 26.046773094751487 26.642870414040505 26.57343490212332 20.736921589084687 34 21.892671516433467 27.904857865626205 28.629583577489075 21.572887040451246 35 21.935428546927927 26.5990414802746 29.480436574292423 21.98509339850505 36 25.889441514575502 27.75764981634724 26.237810077796357 20.1150985912809 37 22.866674289089932 30.0670058645019 27.003268113974283 20.063051732433888 38 22.56022905381907 30.260067553726174 25.83810925790945 21.3415941345453 39 22.221984021495235 29.047387652627116 26.776143720790635 21.954484605087014 40 23.79196501307722 26.11930521611952 27.542792760603508 22.545937010199754 41 20.013744181947242 26.74922703864092 27.953450813931884 25.283577965479953 42 22.6475296202604 27.28994268890509 25.5964546203795 24.46607307045501 43 22.619898335929722 26.926329279156956 26.40788539686623 24.045886988047087 44 22.082993897297374 27.617111387423954 28.511197816175738 21.788696899102934 45 20.75716865087872 30.422520449532414 26.5612866650469 22.259024234541965 46 21.858847013201085 30.117504418623486 26.679315125269763 21.344333442905665 47 22.202451561882167 27.751456597445532 27.116770760384362 22.929321080287938 48 22.564754867631855 26.175996989142813 28.849204647772588 22.410043495452747 49 22.099310647096097 26.303315277718227 29.230206710590878 22.3671673645948 50 20.88698804708752 29.580719080354633 27.349850171742723 22.182442700815123 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 628.0 1 872.0 2 1116.0 3 3684.0 4 6252.0 5 4638.0 6 3024.0 7 3122.0 8 3220.0 9 3322.0 10 3424.0 11 3455.0 12 3486.0 13 3509.5 14 3533.0 15 3462.0 16 3391.0 17 3429.0 18 3467.0 19 3471.0 20 3475.0 21 3671.0 22 3867.0 23 4545.5 24 5224.0 25 6043.5 26 6863.0 27 8307.0 28 9751.0 29 11305.5 30 12860.0 31 15191.5 32 17523.0 33 19902.0 34 22281.0 35 24726.0 36 27171.0 37 29497.0 38 31823.0 39 36477.5 40 41132.0 41 48071.0 42 55010.0 43 59907.0 44 64804.0 45 68580.5 46 72357.0 47 68608.5 48 64860.0 49 63182.0 50 61504.0 51 57175.0 52 52846.0 53 49245.0 54 45644.0 55 42674.5 56 39705.0 57 38305.0 58 36905.0 59 35285.0 60 33665.0 61 30166.0 62 26667.0 63 24174.0 64 21681.0 65 18651.0 66 15621.0 67 13658.0 68 11695.0 69 9872.5 70 8050.0 71 7246.0 72 6442.0 73 5007.5 74 3573.0 75 2934.5 76 2296.0 77 1823.5 78 1351.0 79 1102.0 80 853.0 81 552.0 82 251.0 83 243.5 84 236.0 85 139.0 86 42.0 87 36.5 88 31.0 89 21.5 90 12.0 91 13.0 92 14.0 93 8.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 839628.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.990083633748554 #Duplication Level Percentage of deduplicated Percentage of total 1 76.57412536399912 21.433161731194815 2 6.639812347850207 3.716978058574473 3 2.510100654444655 2.1077378174109858 4 1.4016987990677583 1.5693466646092586 5 1.0303882612867084 1.4420326804323862 6 0.8498138279522442 1.4271816070499592 7 0.6773370634554386 1.3271104738048762 8 0.648607259130247 1.4523657142809625 9 0.5963728658946096 1.5023273753959585 >10 8.689329614101847 56.455041034414656 >50 0.35935169851185084 6.082034304989822 >100 0.022223617239669313 0.9413943585794187 >500 0.0 0.0 >1k 8.386270656478986E-4 0.5432881792624522 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3470 0.4132782613252535 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1159 0.13803732128990456 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02119986470198707 0.0 2 0.0 0.0 0.0 0.07932084208721005 0.0 3 0.0 0.0 0.0 0.12493628130553054 0.0 4 0.0 0.0 0.0 0.20580542811816663 0.0 5 0.0 0.0 0.0 0.32895520397128253 0.0 6 0.0 0.0 0.0 0.6064590509130234 0.0 7 0.0 0.0 0.0 0.7430671678409962 0.0 8 0.0 0.0 0.0 1.1595611389805962 0.0 9 0.0 0.0 0.0 1.3840653241673693 0.0 10 0.0 0.0 0.0 1.6797915267237395 0.0 11 0.0 0.0 0.0 1.860466778144607 0.0 12 0.0 0.0 0.0 2.0308993983049635 0.0 13 0.0 0.0 0.0 2.120701072379673 0.0 14 0.0 0.0 0.0 2.1667929130519705 0.0 15 0.0 0.0 0.0 2.207644337730519 0.0 16 0.0 0.0 0.0 2.2862505776367628 0.0 17 0.0 0.0 0.0 2.3718837389891716 0.0 18 0.0 0.0 0.0 2.507896354099673 0.0 19 0.0 0.0 0.0 2.5654218296674243 0.0 20 0.0 0.0 0.0 2.6365247466735267 0.0 21 0.0 0.0 0.0 2.7088186673145724 0.0 22 0.0 0.0 0.0 2.783256394498516 0.0 23 0.0 0.0 0.0 2.871747964574788 0.0 24 0.0 0.0 0.0 2.9451137884872827 0.0 25 0.0 0.0 0.0 3.0064504756868518 0.0 26 0.0 0.0 0.0 3.065166954889546 0.0 27 0.0 0.0 0.0 3.1317440580828655 0.0 28 0.0 0.0 0.0 3.1998694660016103 0.0 29 0.0 0.0 0.0 3.277403802636406 0.0 30 0.0 0.0 0.0 3.3907873486829883 0.0 31 0.0 0.0 0.0 3.474991305673465 0.0 32 0.0 0.0 0.0 3.565864883019623 0.0 33 0.0 0.0 0.0 3.6457812269243046 0.0 34 0.0 0.0 0.0 3.727603176644895 0.0 35 0.0 0.0 0.0 3.8213351627149166 0.0 36 0.0 0.0 0.0 3.9106604353356484 0.0 37 0.0 0.0 0.0 4.004511521769165 0.0 38 0.0 0.0 0.0 4.104913128194867 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 75 0.0 44.0 28 CGTGCCG 20 7.8552694E-4 44.0 2 GCGTTAG 45 4.802132E-10 44.0 1 TAGCCGT 25 4.4418117E-5 44.0 44 GTATGCG 20 7.8552694E-4 44.0 1 ACTAACG 20 7.8552694E-4 44.0 29 CCGAAAC 20 7.8552694E-4 44.0 18 TACGGGT 75 0.0 41.066666 4 CGTTTTT 2360 0.0 40.737286 1 CACGTAG 60 3.6379788E-12 40.333332 1 TCGTCCC 160 0.0 39.875 38 ATAGGGC 405 0.0 39.11111 4 CGGTCTA 85 0.0 38.823532 31 TAGTACG 40 4.122776E-7 38.5 1 GACCGAT 630 0.0 38.06349 9 AGGGCGA 895 0.0 37.854748 6 CTCGTCC 175 0.0 37.714287 37 TAACGCG 35 7.287861E-6 37.714287 1 GCGGGAT 490 0.0 37.714287 5 TTAGGGA 875 0.0 37.21143 4 >>END_MODULE