##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547179_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1627520 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.619409899724733 31.0 30.0 31.0 28.0 34.0 2 30.948897094966576 31.0 31.0 33.0 28.0 34.0 3 31.059030303775067 31.0 31.0 34.0 28.0 34.0 4 34.90926317341722 35.0 35.0 37.0 32.0 37.0 5 34.73216058788832 35.0 35.0 37.0 32.0 37.0 6 34.77422888812426 35.0 35.0 37.0 32.0 37.0 7 35.41564650511207 35.0 35.0 37.0 33.0 37.0 8 34.37438864038537 36.0 35.0 37.0 32.0 37.0 9 36.479651248525364 39.0 37.0 39.0 32.0 39.0 10 35.921239063114434 38.0 35.0 39.0 30.0 39.0 11 35.70776211659457 37.0 35.0 39.0 30.0 39.0 12 35.51984245969327 37.0 35.0 39.0 30.0 39.0 13 35.47912713822257 37.0 35.0 39.0 30.0 39.0 14 36.396502039913486 38.0 35.0 40.0 30.0 41.0 15 36.493107918796696 38.0 35.0 40.0 30.0 41.0 16 36.510556552300436 38.0 35.0 40.0 30.0 41.0 17 36.40607427251278 38.0 35.0 40.0 30.0 41.0 18 36.25320549056233 38.0 35.0 40.0 30.0 41.0 19 36.15905549547778 38.0 34.0 40.0 30.0 41.0 20 35.96007668108533 38.0 34.0 40.0 30.0 41.0 21 35.80701681085332 38.0 34.0 40.0 29.0 41.0 22 35.75237600766811 37.0 34.0 40.0 29.0 41.0 23 35.620434157491154 37.0 34.0 40.0 29.0 41.0 24 35.50174867282737 37.0 34.0 40.0 28.0 41.0 25 35.297719843688554 37.0 34.0 40.0 27.0 41.0 26 35.118350004915456 37.0 33.0 40.0 27.0 41.0 27 34.91652637141172 37.0 33.0 40.0 26.0 41.0 28 34.89556073043649 37.0 33.0 40.0 26.0 41.0 29 34.71014181085332 36.0 33.0 40.0 25.0 41.0 30 34.667435730436495 37.0 33.0 40.0 25.0 41.0 31 34.55414004128981 37.0 33.0 40.0 25.0 41.0 32 34.19295492528509 37.0 33.0 40.0 23.0 41.0 33 33.879151715493514 37.0 32.0 40.0 22.0 41.0 34 33.60353359712938 37.0 32.0 40.0 21.0 41.0 35 33.30633171942588 36.0 31.0 40.0 18.0 41.0 36 33.2182492381046 37.0 31.0 40.0 18.0 41.0 37 33.21418845851357 37.0 31.0 40.0 18.0 41.0 38 33.20081657982698 36.0 31.0 40.0 18.0 41.0 39 33.085812155918205 36.0 31.0 40.0 18.0 41.0 40 33.001324100471884 36.0 31.0 40.0 18.0 41.0 41 32.98811013075108 36.0 31.0 40.0 18.0 41.0 42 32.81610610007865 36.0 31.0 40.0 16.0 41.0 43 32.845716181675186 36.0 31.0 40.0 17.0 41.0 44 32.533357500983094 35.0 31.0 40.0 15.0 41.0 45 32.45830957530476 35.0 30.0 39.0 15.0 41.0 46 32.40013947601258 35.0 30.0 39.0 15.0 41.0 47 32.33803762780181 35.0 30.0 39.0 15.0 41.0 48 32.312551612268976 35.0 30.0 39.0 15.0 41.0 49 32.31176882618954 35.0 30.0 39.0 15.0 41.0 50 31.75516675678333 35.0 29.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 10.0 13 8.0 14 30.0 15 105.0 16 285.0 17 798.0 18 1702.0 19 3244.0 20 5595.0 21 8290.0 22 11670.0 23 16516.0 24 23268.0 25 31961.0 26 42437.0 27 49789.0 28 52561.0 29 54830.0 30 61768.0 31 73000.0 32 85136.0 33 102247.0 34 132777.0 35 148265.0 36 150607.0 37 175013.0 38 204046.0 39 191558.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.19210823830122 22.539876622099882 25.619347227683836 19.64866791191506 2 36.32403902870625 23.966279984270546 26.7189957727094 12.990685214313801 3 27.61778657097916 24.871460872984663 34.52031311443177 12.990439441604403 4 24.315215788438852 27.568079040503342 33.93604994101455 14.180655230043257 5 21.451656508061344 31.082321569012976 33.752580613448686 13.713441309476995 6 19.688052988596148 39.9778190129768 30.881586708611874 9.45254128981518 7 83.78287209988203 3.142019760125836 11.710885273299253 1.3642228666928824 8 81.78940965395202 5.501191997640582 11.161276051907196 1.5481222965001966 9 78.60444111285882 5.179967066456941 13.263861580810065 2.951730239874164 10 35.2610720605584 32.6341918993315 19.585197109712936 12.51953893039717 11 27.95271333071176 25.60834889893826 30.480239874164372 15.958697896185608 12 25.888837003539127 22.379755701926857 33.58183002359418 18.149577270939833 13 22.938950058985448 25.186418600078646 33.98286964215493 17.891761698780968 14 20.356739087691704 27.296131537554068 34.14723014156508 18.199899233189146 15 19.70673171451042 23.94514353126229 38.405303775068816 17.942820979158476 16 22.583931380259536 22.807031557215886 36.36330121903264 18.24573584349194 17 22.326300137632717 23.01913340542666 33.22773299252851 21.426833464412113 18 23.257840149429807 23.180974734565474 34.553062327959104 19.008122788045615 19 25.5427275855289 24.499299547778215 31.069848604011014 18.88812426268187 20 26.725385863153754 24.12523348407393 30.80207923712151 18.347301415650808 21 25.295603126228865 24.792199174203695 31.752359418010222 18.159838281557217 22 24.027723161620134 23.184722768383796 32.01515188753441 20.77240218246166 23 22.002863252064493 25.889021333071177 31.914323633503738 20.1937917813606 24 21.616815768777034 24.473984958710187 34.57727093983484 19.33192833267794 25 22.236162996460873 25.308506193472276 32.64709496657491 19.80823584349194 26 21.29215001966182 26.08477929610696 32.03899184034605 20.584078843885177 27 21.012767892253244 25.129092115611485 32.86872050727487 20.9894194848604 28 20.445647365316553 25.86481272119544 33.97561934722768 19.713920566260324 29 21.430950157294536 24.6279001179709 33.82158130161227 20.119568423122296 30 21.931773495871017 24.821077467558002 33.41900560361778 19.828143432953205 31 23.699678037750687 25.066727290601655 31.17755849390484 20.056036177742822 32 24.28560017695635 25.300764353126233 31.09516319307904 19.31847227683838 33 23.988829630357845 25.555261993708218 30.07932314195832 20.376585233975618 34 22.075427644514352 26.87389402280771 30.700145005898545 20.350533326779395 35 21.798441801022413 26.810853322847034 30.751880161226897 20.638824714903656 36 23.747419386551314 28.179868757373182 28.041928824223355 20.030783031852142 37 22.386514451435314 28.879890876917024 28.190989972473457 20.542604699174206 38 22.792838183248133 29.22495576091231 27.567648938261897 20.414557117577665 39 22.67271677152969 27.96684526150216 27.4111531655525 21.94928480141565 40 23.533412799842708 26.608275167125445 28.839768482107747 21.018543550924104 41 21.275806134486828 26.66977978765238 28.95417567833268 23.100238399528116 42 22.650781557215886 27.40918698387731 27.629583661030278 22.310447797876524 43 22.395300825796305 26.973800629178136 28.36899085725521 22.26190768777035 44 22.01214117184428 27.352044828942194 29.26618413291388 21.369629866299647 45 21.546954876130556 27.732378096736138 28.850582481321275 21.870084545812034 46 22.30049400314589 27.964080318521432 28.630247247345654 21.105178430987024 47 22.049682953204876 27.401015041289817 29.13524872198191 21.414053283523398 48 22.12452074321667 26.660133208808496 29.76307510813999 21.452270939834843 49 22.397021234762093 26.545173023987417 29.576164962642547 21.481640778607943 50 21.274392941407786 27.68869199764058 29.355030967361383 21.68188409359025 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 990.0 1 1525.5 2 2061.0 3 17363.0 4 32665.0 5 24136.5 6 15608.0 7 15817.0 8 16026.0 9 16143.5 10 16261.0 11 16170.5 12 16080.0 13 15537.0 14 14994.0 15 14315.0 16 13636.0 17 12974.0 18 12312.0 19 11888.5 20 11465.0 21 11356.5 22 11248.0 23 11771.5 24 12295.0 25 13634.5 26 14974.0 27 17226.0 28 19478.0 29 22811.5 30 26145.0 31 29488.5 32 32832.0 33 37581.0 34 42330.0 35 47224.0 36 52118.0 37 57097.0 38 62076.0 39 67281.0 40 72486.0 41 80757.0 42 89028.0 43 94585.5 44 100143.0 45 103344.0 46 106545.0 47 108255.0 48 109965.0 49 111235.5 50 112506.0 51 106895.5 52 101285.0 53 95762.5 54 90240.0 55 85376.0 56 80512.0 57 77786.5 58 75061.0 59 70668.0 60 66275.0 61 61223.5 62 56172.0 63 49740.5 64 43309.0 65 37548.0 66 31787.0 67 26810.5 68 21834.0 69 19076.0 70 16318.0 71 13733.5 72 11149.0 73 9308.0 74 7467.0 75 6088.0 76 4709.0 77 3656.0 78 2603.0 79 2033.0 80 1463.0 81 1034.0 82 605.0 83 450.5 84 296.0 85 199.0 86 102.0 87 70.5 88 39.0 89 27.0 90 15.0 91 10.5 92 6.0 93 5.0 94 4.0 95 2.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1627520.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.36914665833323 #Duplication Level Percentage of deduplicated Percentage of total 1 74.71266832234336 23.436726498389962 2 5.894901728413128 3.6983607371010687 3 2.8575140150117986 2.6891332864544317 4 1.9676717162312993 2.4689673056765544 5 1.517201867604627 2.379666394759331 6 1.261619989617282 2.3745565488833615 7 1.0986688893506318 2.4125013863291636 8 0.9671735187063003 2.4271526361883304 9 0.8960681639840226 2.529800428669037 >10 8.698427376042561 51.14253201862511 >50 0.10784004199429213 2.1188237376377557 >100 0.01925200479731081 1.0206832687335927 >500 7.938927226752938E-4 0.17264515847581385 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 1.9847318066882344E-4 1.128450594076497 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18125 1.1136575894612664 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013087396775462053 0.0 2 0.0 0.0 0.0 0.05308690523004326 0.0 3 0.0 0.0 0.0 0.10181134486826583 0.0 4 0.0 0.0 0.0 0.14826238694455368 0.0 5 0.0 0.0 0.0 0.24319209594966576 0.0 6 0.0 0.0 0.0 0.5009462249311837 0.0 7 0.0 0.0 0.0 0.6504989186000787 0.0 8 0.0 0.0 0.0 0.9997419386551317 0.0 9 0.0 0.0 0.0 1.2100619347227684 0.0 10 0.0 0.0 0.0 1.4728544042469525 0.0 11 0.0 0.0 0.0 1.6136207235548565 0.0 12 0.0 0.0 0.0 1.7558616791191506 0.0 13 0.0 0.0 0.0 1.8427423318914669 0.0 14 0.0 0.0 0.0 1.8957677939441604 0.0 15 0.0 0.0 0.0 1.9354600865119937 0.0 16 0.0 0.0 0.0 1.994814195831695 0.0 17 0.0 0.0 0.0 2.060558395595753 0.0 18 0.0 0.0 0.0 2.160280672434133 0.0 19 0.0 0.0 0.0 2.211892941407786 0.0 20 0.0 0.0 0.0 2.2730289028706254 0.0 21 0.0 0.0 0.0 2.335393727880456 0.0 22 0.0 0.0 0.0 2.402551120723555 0.0 23 0.0 0.0 0.0 2.481382717263075 0.0 24 0.0 0.0 0.0 2.5491545418796697 0.0 25 0.0 0.0 0.0 2.607279787652379 0.0 26 0.0 0.0 0.0 2.667739874164373 0.0 27 0.0 0.0 0.0 2.734528607943374 0.0 28 0.0 0.0 0.0 2.801133012190326 0.0 29 0.0 0.0 0.0 2.867430200550531 0.0 30 0.0 0.0 0.0 2.962912898151789 0.0 31 0.0 0.0 0.0 3.040945733385765 0.0 32 0.0 0.0 0.0 3.1506218049547776 0.0 33 0.0 0.0 0.0 3.240328843885175 0.0 34 0.0 0.0 0.0 3.3259806331104995 0.0 35 0.0 0.0 0.0 3.4228150806134487 0.0 36 0.0 0.0 0.0 3.5117848014156507 0.0 37 0.0 0.0 0.0 3.6018604994101455 0.0 38 0.0 0.0 0.0 3.7128268777035 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 14810 0.0 42.588795 1 TACGGGA 470 0.0 37.91489 4 GTTTTTT 16795 0.0 37.529026 2 GTACGAC 30 1.3013334E-4 36.666664 35 TGGGCGA 975 0.0 36.102566 6 TATTGCG 80 0.0 35.75 1 TAGGGAC 1605 0.0 35.501556 5 GGGCGAT 3295 0.0 35.386948 7 AGGGATT 2395 0.0 35.365345 6 GACCGAT 1220 0.0 35.34426 9 AGGGCGA 1645 0.0 35.30699 6 TTAGGGA 1825 0.0 35.2 4 TATTACG 25 0.0023530314 35.2 1 CGTAATC 25 0.0023530314 35.2 16 TGTAGCG 100 0.0 35.2 1 ATACGCG 75 1.8189894E-12 35.2 1 TTAGCGG 370 0.0 35.08108 2 TAGGGAT 2105 0.0 34.802853 5 GGACCGA 1295 0.0 34.656372 8 TAAGGGA 2130 0.0 34.497654 4 >>END_MODULE