##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547178_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2047827 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.599406590498123 31.0 30.0 31.0 28.0 33.0 2 30.91743394339463 31.0 31.0 33.0 28.0 34.0 3 31.089178919898995 31.0 31.0 34.0 28.0 34.0 4 34.90616248345197 35.0 35.0 37.0 32.0 37.0 5 34.69642992303549 35.0 35.0 37.0 32.0 37.0 6 34.73885196356919 35.0 35.0 37.0 32.0 37.0 7 35.40486964963349 35.0 35.0 37.0 33.0 37.0 8 34.38710008218467 35.0 35.0 37.0 33.0 37.0 9 36.496512156544476 39.0 37.0 39.0 32.0 39.0 10 35.86775884876994 38.0 35.0 39.0 30.0 39.0 11 35.63334207430608 37.0 35.0 39.0 30.0 39.0 12 35.10905413396737 37.0 34.0 39.0 30.0 39.0 13 34.79727193752207 37.0 33.0 39.0 27.0 39.0 14 35.6771157915195 38.0 33.0 40.0 27.0 41.0 15 35.967363454041774 38.0 34.0 40.0 30.0 41.0 16 36.102819720611166 38.0 34.0 40.0 30.0 41.0 17 36.028262641326634 38.0 34.0 40.0 30.0 41.0 18 35.979056824624344 38.0 34.0 40.0 30.0 41.0 19 35.950133482955344 37.0 34.0 40.0 30.0 41.0 20 35.82109133242212 37.0 34.0 40.0 29.0 41.0 21 35.643117314109055 37.0 34.0 40.0 29.0 41.0 22 35.58177472999428 37.0 34.0 40.0 29.0 41.0 23 35.464648136781086 37.0 34.0 40.0 29.0 41.0 24 35.39593530117534 37.0 34.0 40.0 29.0 41.0 25 35.19078222916291 37.0 33.0 40.0 27.0 41.0 26 35.005102481801444 37.0 33.0 40.0 27.0 41.0 27 34.78835712196392 36.0 33.0 40.0 26.0 41.0 28 34.823868422479045 36.0 33.0 40.0 26.0 41.0 29 34.70865703011045 36.0 33.0 40.0 26.0 41.0 30 34.72929646889117 36.0 33.0 40.0 26.0 41.0 31 34.661644758077706 36.0 33.0 40.0 25.0 41.0 32 34.450769523011466 36.0 33.0 40.0 25.0 41.0 33 34.30439973689184 36.0 33.0 40.0 24.0 41.0 34 34.23061860205965 36.0 33.0 40.0 24.0 41.0 35 34.053916663858814 36.0 33.0 40.0 23.0 41.0 36 33.9484419338157 36.0 33.0 40.0 23.0 41.0 37 33.93293964773392 36.0 32.0 40.0 23.0 41.0 38 33.9455408098438 36.0 32.0 40.0 23.0 41.0 39 33.865985261450305 36.0 32.0 40.0 23.0 41.0 40 33.783346933114956 36.0 32.0 40.0 23.0 41.0 41 33.81052940507182 36.0 32.0 40.0 23.0 41.0 42 33.64511650642364 36.0 32.0 40.0 23.0 41.0 43 33.68178659623103 35.0 32.0 40.0 23.0 41.0 44 33.31634410523936 35.0 32.0 39.0 22.0 41.0 45 33.28429891782851 35.0 31.0 39.0 22.0 41.0 46 33.25624381356433 35.0 31.0 39.0 22.0 41.0 47 33.203650503680244 35.0 31.0 39.0 22.0 41.0 48 33.18923424683823 35.0 31.0 39.0 22.0 41.0 49 33.21653440451757 35.0 31.0 39.0 22.0 41.0 50 32.628021800669686 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 0.0 12 3.0 13 15.0 14 32.0 15 102.0 16 294.0 17 744.0 18 1688.0 19 3260.0 20 5174.0 21 8448.0 22 12242.0 23 17203.0 24 23850.0 25 32253.0 26 41045.0 27 49320.0 28 57237.0 29 67800.0 30 80586.0 31 96689.0 32 117122.0 33 142289.0 34 195437.0 35 218076.0 36 182632.0 37 210709.0 38 246027.0 39 237548.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.68409538501055 24.24443080396928 28.268257035384337 13.803216775635832 2 30.729744260623576 26.197085984314107 29.377188600404235 13.695981154658085 3 29.575447535363093 26.02636843834953 30.478355837675743 13.919828188611636 4 25.588636149440358 28.65730357105361 30.413897267689116 15.340163011816916 5 22.294217236123952 33.64927799076777 29.90174462979539 14.154760143312886 6 20.49553013999718 42.06473496052156 26.763198258446636 10.67653664103462 7 88.7802534100781 3.90081779369058 5.952016454514957 1.3669123417163656 8 87.2563453846443 5.6306025850816495 5.503882896357944 1.6091691339160976 9 84.30546135000661 5.323008242395476 7.486667574946517 2.884862832651391 10 43.39121419924633 29.051038002721906 14.792899986180474 12.764847811851293 11 37.07803442380631 24.973935786567907 22.715786050286475 15.23224373933931 12 33.28215713534395 22.819798742764892 26.5715805094864 17.32646361240476 13 23.090866562458643 32.416752001023525 28.029613829683854 16.462767606833975 14 19.76172791939944 34.304069630881905 28.865866110760336 17.06833633895832 15 18.664320765377155 24.909965539081185 39.79432832949268 16.63138536604899 16 21.115797379368473 21.217075465847458 38.463307691518864 19.203819463265205 17 20.836721070676383 21.70129605674698 29.274592043175524 28.187390829401117 18 23.39831440839485 23.69247988233381 32.28124250730164 20.6279632019697 19 27.999142505690177 25.236750956013378 26.07407754658963 20.690028991706818 20 28.96543506848967 24.99967038231257 25.94227930386698 20.092615245330784 21 25.405905869978273 26.944170576909084 28.303367423127053 19.34655612998559 22 25.38495683473262 24.202288572228024 26.721446684705302 23.691307908334053 23 21.549671920528443 28.76859226878052 26.470009429507474 23.211726381183567 24 21.57311140052358 25.462551279966522 33.330110404834 19.6342269146759 25 21.163750648858525 25.575695603193044 32.299408104297875 20.96114564365056 26 20.338485624029765 30.285907940465673 27.92496631795557 21.450640117548993 27 20.900886647163066 29.324938092915076 28.60114648356526 21.1730287763566 28 20.095545180330173 27.13764395136894 33.19635887211175 19.57045199618913 29 20.565506754232658 25.76003734690479 32.624679721480376 21.04977617738217 30 22.009329889683062 28.021214682685596 29.862532333053526 20.106923094577812 31 27.020641880393214 26.779215236443317 26.236835435805855 19.963307447357614 32 28.21561586989526 26.214177271810556 26.764272567946414 18.80593429034777 33 26.636478569722932 26.22081845780918 26.346170843533166 20.796532128934718 34 21.839051833968398 27.339369976077084 28.626783414809942 22.19479477514458 35 22.249193901633294 25.965669951612124 29.726241523331804 22.058894623422777 36 27.588707444525344 25.90482496812475 26.538765237493205 19.967702349856705 37 22.709242528787833 29.541606786120116 27.82515319897628 19.92399748611577 38 22.870291289254414 31.061705896054697 24.917046215329712 21.150956599361177 39 22.615826434557214 29.435396642392153 26.09439176258541 21.854385160465213 40 24.41295089868431 25.553769922947595 26.748402086699706 23.28487709166839 41 21.0539757508813 24.602322364145017 27.444066320055356 26.899635564918327 42 22.635701160303093 26.61811764372674 25.93417315036866 24.81200804560151 43 22.200703477393354 26.51908584074729 27.446361435804878 23.833849246054477 44 21.886321451958587 27.97594718694499 28.41753722360336 21.72019413749306 45 20.666540679461693 30.625926897145124 25.98154043285883 22.725991990534354 46 22.841187268260455 29.704852997836245 26.726476406454257 20.727483327449047 47 22.623248936555676 27.286777642837993 27.155663051615196 22.93431036899113 48 23.27960320866948 26.372930916527615 29.198023075191408 21.14944279961149 49 22.108068699162576 25.22346858401613 30.18228590598718 22.48617681083412 50 21.792319370728094 29.31858990041639 27.165917824113073 21.72317290474244 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1337.0 1 1907.5 2 2478.0 3 8654.0 4 14830.0 5 11196.5 6 7563.0 7 7717.0 8 7871.0 9 8330.0 10 8789.0 11 8989.5 12 9190.0 13 9174.5 14 9159.0 15 9446.5 16 9734.0 17 8985.0 18 8236.0 19 8616.5 20 8997.0 21 9204.5 22 9412.0 23 10557.0 24 11702.0 25 13430.0 26 15158.0 27 17589.5 28 20021.0 29 25533.0 30 31045.0 31 34552.0 32 38059.0 33 43630.5 34 49202.0 35 55858.5 36 62515.0 37 66903.0 38 71291.0 39 83456.0 40 95621.0 41 116136.5 42 136652.0 43 154544.0 44 172436.0 45 175929.5 46 179423.0 47 174014.5 48 168606.0 49 161698.0 50 154790.0 51 145605.0 52 136420.0 53 126547.5 54 116675.0 55 107248.0 56 97821.0 57 92399.5 58 86978.0 59 81793.5 60 76609.0 61 70886.0 62 65163.0 63 57636.0 64 50109.0 65 42285.0 66 34461.0 67 30435.0 68 26409.0 69 22764.5 70 19120.0 71 16459.5 72 13799.0 73 11238.0 74 8677.0 75 6893.0 76 5109.0 77 4235.0 78 3361.0 79 2480.5 80 1600.0 81 1246.0 82 892.0 83 596.5 84 301.0 85 212.5 86 124.0 87 82.5 88 41.0 89 34.0 90 27.0 91 20.0 92 13.0 93 7.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2047827.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.550073649184178 #Duplication Level Percentage of deduplicated Percentage of total 1 79.37140521883167 18.69202438542727 2 7.153525559640052 3.3693210756168934 3 2.7634691098561963 1.9523970319307662 4 1.5227885226833295 1.4344712744529915 5 0.9809669261308819 1.1550921678898043 6 0.6385282873248327 0.9022432916152348 7 0.4956831962560816 0.8171363044945615 8 0.36917805924708497 0.6955336387945386 9 0.3252059985659647 0.6892762695646458 >10 4.119342104758945 23.810633230203845 >50 1.7121259896288852 28.802251652189785 >100 0.5463448975860239 16.94082506795882 >500 8.206454229097165E-4 0.11764860865940993 >1k 4.1032271145485826E-4 0.23036902098072545 >5k 2.0516135572742913E-4 0.39077698022066015 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8088 0.39495523791804676 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3760 0.18360925996190108 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018263261496210374 0.0 2 4.883224998986731E-5 0.0 0.0 0.07818043223377756 0.0 3 4.883224998986731E-5 0.0 0.0 0.12969845597308757 0.0 4 4.883224998986731E-5 0.0 0.0 0.21452007420548708 0.0 5 4.883224998986731E-5 0.0 0.0 0.34543933642832136 0.0 6 4.883224998986731E-5 0.0 0.0 0.6161164981221559 0.0 7 4.883224998986731E-5 0.0 0.0 0.7479147408448077 0.0 8 4.883224998986731E-5 0.0 0.0 1.116988886268225 0.0 9 4.883224998986731E-5 0.0 0.0 1.3047488874792645 0.0 10 4.883224998986731E-5 0.0 0.0 1.5748888944232105 0.0 11 4.883224998986731E-5 0.0 0.0 1.7497083493869354 0.0 12 4.883224998986731E-5 0.0 0.0 1.9102199551036294 0.0 13 4.883224998986731E-5 0.0 0.0 1.988742213087336 0.0 14 4.883224998986731E-5 0.0 0.0 2.023608439580101 0.0 15 4.883224998986731E-5 0.0 0.0 2.0650670198214987 0.0 16 4.883224998986731E-5 0.0 0.0 2.1501327993038473 0.0 17 4.883224998986731E-5 0.0 0.0 2.240570126285082 0.0 18 4.883224998986731E-5 0.0 0.0 2.3841369412552917 0.0 19 4.883224998986731E-5 0.0 0.0 2.444102944242849 0.0 20 4.883224998986731E-5 0.0 0.0 2.5181326352274875 0.0 21 4.883224998986731E-5 0.0 0.0 2.6039797307096744 0.0 22 4.883224998986731E-5 0.0 0.0 2.700911746939561 0.0 23 4.883224998986731E-5 0.0 0.0 2.805656923167826 0.0 24 4.883224998986731E-5 0.0 0.0 2.884911664901381 0.0 25 4.883224998986731E-5 0.0 0.0 2.959478510635908 0.0 26 4.883224998986731E-5 0.0 0.0 3.0301876086212363 0.0 27 4.883224998986731E-5 0.0 0.0 3.1043149641058547 0.0 28 4.883224998986731E-5 0.0 0.0 3.1790283065903515 0.0 29 4.883224998986731E-5 0.0 0.0 3.2717607493211096 0.0 30 4.883224998986731E-5 0.0 0.0 3.3887628202968316 0.0 31 4.883224998986731E-5 0.0 0.0 3.4884782747761407 0.0 32 4.883224998986731E-5 0.0 0.0 3.5849708007561185 0.0 33 9.766449997973462E-5 0.0 0.0 3.6803401849863295 0.0 34 9.766449997973462E-5 0.0 0.0 3.79060340546345 0.0 35 9.766449997973462E-5 0.0 0.0 3.910584243688554 0.0 36 9.766449997973462E-5 0.0 0.0 4.0163548971666065 0.0 37 9.766449997973462E-5 0.0 0.0 4.125885633893879 0.0 38 9.766449997973462E-5 0.0 0.0 4.24679428486879 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCTA 20 7.8579265E-4 44.0 14 ATCACGC 35 1.4468242E-7 44.0 12 GCTCGAT 25 4.4440625E-5 44.0 27 CGTTTTT 6535 0.0 41.71079 1 TAATGCG 75 0.0 41.06667 1 AAATGCG 160 0.0 39.875 1 TACGGGA 545 0.0 39.155964 4 CGGTCTA 160 0.0 38.5 31 TAAGGGA 2180 0.0 37.74312 4 AAGCGTA 35 7.2929943E-6 37.714287 18 GCGTATG 100 0.0 37.4 1 CGTAAGG 400 0.0 36.850002 2 CGCGTAA 60 1.9826984E-10 36.666664 31 GGGCGAT 4370 0.0 36.498856 7 AATGCGG 365 0.0 36.164383 2 TCGACAC 55 3.426976E-9 36.0 38 GACCGAT 1310 0.0 35.603054 9 AGGGCGA 2290 0.0 35.545853 6 TTAGGGA 2355 0.0 35.498936 4 ATTACGA 25 0.0023531727 35.2 43 >>END_MODULE