##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547174_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2038323 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.55055160541288 31.0 30.0 31.0 27.0 34.0 2 30.89681076061056 31.0 31.0 33.0 28.0 34.0 3 30.980850925000603 31.0 31.0 34.0 28.0 34.0 4 34.83543972177128 35.0 35.0 37.0 32.0 37.0 5 34.66020007623914 35.0 35.0 37.0 32.0 37.0 6 34.701200447622874 35.0 35.0 37.0 31.0 37.0 7 35.38337496069072 35.0 35.0 37.0 33.0 37.0 8 34.36069847614927 35.0 35.0 37.0 32.0 37.0 9 36.46003258561082 39.0 37.0 39.0 32.0 39.0 10 35.84383583956026 38.0 35.0 39.0 30.0 39.0 11 35.62019954639182 37.0 35.0 39.0 30.0 39.0 12 35.425870188385254 37.0 35.0 39.0 30.0 39.0 13 35.381385580204906 37.0 35.0 39.0 30.0 39.0 14 36.30492272323866 38.0 35.0 40.0 30.0 41.0 15 36.39941657921733 38.0 35.0 40.0 30.0 41.0 16 36.42442684500935 38.0 35.0 40.0 30.0 41.0 17 36.31171114685945 38.0 34.0 40.0 30.0 41.0 18 36.14755610371859 38.0 34.0 40.0 30.0 41.0 19 36.00678351762699 37.0 34.0 40.0 29.0 41.0 20 35.77653002002136 37.0 34.0 40.0 29.0 41.0 21 35.624099811462656 37.0 34.0 40.0 29.0 41.0 22 35.59035000831566 37.0 34.0 40.0 29.0 41.0 23 35.43909184167573 37.0 34.0 40.0 28.0 41.0 24 35.294468541050655 37.0 34.0 40.0 27.0 41.0 25 35.095094349619764 37.0 33.0 40.0 27.0 41.0 26 34.922150709185935 36.0 33.0 40.0 27.0 41.0 27 34.73290641375287 36.0 33.0 40.0 26.0 41.0 28 34.71192740306615 36.0 33.0 40.0 25.0 41.0 29 34.50605276985051 36.0 33.0 40.0 25.0 41.0 30 34.405055037891444 36.0 33.0 40.0 24.0 41.0 31 34.262129211121106 36.0 33.0 40.0 24.0 41.0 32 33.83081091662116 36.0 32.0 40.0 22.0 41.0 33 33.43362803638089 36.0 32.0 40.0 20.0 41.0 34 33.08428644527879 36.0 31.0 40.0 18.0 41.0 35 32.7529297368474 36.0 31.0 40.0 16.0 41.0 36 32.623358025200126 36.0 31.0 40.0 15.0 41.0 37 32.609435305395664 36.0 31.0 40.0 15.0 41.0 38 32.58101880810843 36.0 31.0 40.0 15.0 41.0 39 32.4554135924483 36.0 30.0 40.0 14.0 41.0 40 32.378883032767625 36.0 30.0 40.0 14.0 41.0 41 32.37486404264682 36.0 30.0 40.0 13.0 41.0 42 32.21086893490384 35.0 30.0 40.0 12.0 41.0 43 32.23941298802987 35.0 30.0 40.0 12.0 41.0 44 31.850581581034998 35.0 30.0 39.0 10.0 41.0 45 31.822474161357153 35.0 30.0 39.0 10.0 41.0 46 31.78086986213667 35.0 29.0 39.0 10.0 41.0 47 31.734664721930724 35.0 29.0 39.0 10.0 41.0 48 31.708287646266072 35.0 29.0 39.0 10.0 41.0 49 31.70281255718549 35.0 29.0 39.0 10.0 41.0 50 31.19045754769975 35.0 28.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 1.0 11 3.0 12 5.0 13 12.0 14 66.0 15 172.0 16 450.0 17 1273.0 18 2716.0 19 5290.0 20 8500.0 21 12815.0 22 17832.0 23 24909.0 24 33566.0 25 46765.0 26 61474.0 27 69782.0 28 70612.0 29 72364.0 30 79643.0 31 91260.0 32 106456.0 33 127405.0 34 163091.0 35 180314.0 36 181690.0 37 208611.0 38 242645.0 39 228600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.587497663520452 22.512477168731355 25.607619597090352 21.29240557065784 2 37.01174936455116 23.877030284209127 26.461360638132426 12.649859713107295 3 26.969621595792226 24.127383147813177 36.33212204346416 12.570873212930433 4 23.409390955211713 26.724370965739976 35.96412344854079 13.902114630507532 5 20.964047405636887 30.34828140584196 35.3573010754429 13.330370113078253 6 19.087651957025457 38.87406461095714 32.58335406115714 9.454929370860262 7 82.44571640510361 2.934225831725394 13.492954747603788 1.127103015567209 8 80.62750604295786 5.17209490350646 12.894865043469558 1.3055340100661181 9 77.87720591878717 4.834268170451886 14.873992002248906 2.4145339085120465 10 34.68567052424959 31.262905829939612 21.688662689868092 12.362760955942703 11 26.79786275286105 24.848122696942536 32.718612310217765 15.63540223997865 12 25.10141915682647 22.327275902788717 34.9924913764894 17.57881356389542 13 22.044249120477964 24.601105909122353 35.96839166314661 17.386253307253067 14 19.986528141025737 26.68046232123172 35.95288872273923 17.380120815003313 15 19.18120925878774 23.929916897371026 39.33969248249664 17.549181361344594 16 21.413093018133043 22.520915478067018 38.39641705460813 17.66957444919181 17 21.461907656441102 22.121469462886893 35.675356653484265 20.74126622718774 18 22.55304973745574 22.74811205093599 36.23743636312792 18.461401848480342 19 24.41070428975192 24.666404686597758 32.966904656425896 17.95598636722443 20 25.70186373798461 24.260335579787895 32.583599360847124 17.45420132138037 21 23.785680679656757 24.873437624949528 34.02291982183393 17.317961873559785 22 22.930811260040727 22.43383408812048 34.333174869733604 20.302179782105192 23 21.11093286000305 25.467700653919913 33.748576648548834 19.672789837528203 24 20.77732528161631 24.167955716537566 36.94247673209791 18.11224226974822 25 21.109559181739108 25.225197380395553 34.483985119139604 19.181258318725735 26 19.874377122762194 26.470436726662065 33.87686838641373 19.778317764162008 27 19.95925081549882 25.15877022434619 34.55227655283289 20.3297024073221 28 19.70963385096474 25.66796332082796 36.13436143339402 18.488041394813283 29 20.74357204427365 24.186500373100827 35.73354173994995 19.336385842675572 30 20.919402862058664 24.685783362106985 35.530286416824026 18.864527359010324 31 23.052087426771912 24.95492618196429 33.028523938551444 18.964462452712354 32 23.353904165335916 24.7811068216372 32.73337935155517 19.13160966147171 33 23.482244963138815 25.480603417613402 31.00754885265976 20.029602766588024 34 21.291571551711876 26.88877081797144 31.731428237820992 20.088229392495695 35 21.27126073738068 26.990815489007385 31.351704317716084 20.38621945589585 36 23.06140881499154 27.963330639942736 28.947522056121628 20.027738488944095 37 21.952605156297604 28.97504468133853 29.2325602958903 19.839789866473566 38 22.45017104747383 28.907243847025228 28.840620451223874 19.80196465427707 39 22.370988307544977 27.916968998534582 28.447257868355507 21.264784825564938 40 22.852953138437822 26.64464856649314 29.761033948005295 20.741364347063737 41 21.253059500383404 26.445514278159056 29.753380597677605 22.54804562377994 42 21.911100448751252 27.798587368145284 28.14951310464534 22.140799078458127 43 21.370803351578722 27.13593478560562 29.416535063382987 22.076726799432674 44 21.572145337122723 27.430147233779927 29.86283331935125 21.1348741097461 45 21.10990260130509 28.042120900367607 29.39377125215189 21.45420524617541 46 21.63744411459813 28.1530454201812 29.18703267342811 21.022477791792564 47 21.333321558948214 27.320203912726292 30.014477587703226 21.33199694062227 48 21.65633219072738 27.121020564454213 30.341265834708235 20.881381410110176 49 22.200701262753743 26.456896183774603 30.24628579474401 21.09611675872764 50 20.80391576801125 27.463655171432595 30.240938261502226 21.491490799053928 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1163.0 1 1867.0 2 2571.0 3 24425.0 4 46279.0 5 34906.5 6 23534.0 7 23730.0 8 23926.0 9 24361.5 10 24797.0 11 24476.5 12 24156.0 13 23568.0 14 22980.0 15 21844.0 16 20708.0 17 19814.5 18 18921.0 19 17893.0 20 16865.0 21 16770.5 22 16676.0 23 17245.5 24 17815.0 25 19351.0 26 20887.0 27 23439.5 28 25992.0 29 30771.5 30 35551.0 31 40807.5 32 46064.0 33 50771.5 34 55479.0 35 62400.0 36 69321.0 37 74124.0 38 78927.0 39 86137.5 40 93348.0 41 100949.5 42 108551.0 43 115666.0 44 122781.0 45 126129.0 46 129477.0 47 131405.0 48 133333.0 49 135289.0 50 137245.0 51 132754.5 52 128264.0 53 119502.0 54 110740.0 55 103418.0 56 96096.0 57 92628.0 58 89160.0 59 84656.5 60 80153.0 61 72404.5 62 64656.0 63 56314.5 64 47973.0 65 40586.0 66 33199.0 67 27819.5 68 22440.0 69 19971.0 70 17502.0 71 15315.5 72 13129.0 73 10480.0 74 7831.0 75 6289.0 76 4747.0 77 3634.5 78 2522.0 79 1926.5 80 1331.0 81 1032.5 82 734.0 83 512.0 84 290.0 85 205.0 86 120.0 87 89.5 88 59.0 89 40.0 90 21.0 91 13.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2038323.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.899982230728753 #Duplication Level Percentage of deduplicated Percentage of total 1 76.62163210913384 24.442287027708055 2 5.953631968918851 3.798415080336199 3 2.684976208592669 2.5695208003210683 4 1.7968336252679658 2.292758428704961 5 1.3478980292438165 2.1498961590856025 6 1.071467740714112 2.050788113374755 7 0.9267703608258623 2.069477062961776 8 0.7950230102567137 2.0288975920167722 9 0.7238422268185885 2.078149875602769 >10 7.8623199230042395 49.76979844928384 >50 0.1875792505987627 3.7436543222561354 >100 0.026616531087500273 1.4754927754722331 >500 9.393436914678272E-4 0.17309808855340222 >1k 3.1311456382260907E-4 0.1047777812420767 >5k 0.0 0.0 >10k+ 1.5655728191130453E-4 1.2529884430802967 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25089 1.2308647844330853 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010596946607578877 0.0 2 0.0 0.0 0.0 0.03919889046044223 0.0 3 0.0 0.0 0.0 0.08109607751077724 0.0 4 0.0 0.0 0.0 0.1235329238790908 0.0 5 0.0 0.0 0.0 0.1981530895741254 0.0 6 0.0 0.0 0.0 0.40734466519781215 0.0 7 0.0 0.0 0.0 0.5375006807066397 0.0 8 0.0 0.0 0.0 0.8665947447975615 0.0 9 0.0 0.0 0.0 1.068868869163523 0.0 10 0.0 0.0 0.0 1.31328548026981 0.0 11 0.0 0.0 0.0 1.4386826817928267 0.0 12 0.0 0.0 0.0 1.5524036180723075 0.0 13 0.0 0.0 0.0 1.6297711402952328 0.0 14 0.0 0.0 0.0 1.6742685040594645 0.0 15 0.0 0.0 0.0 1.706893362828168 0.0 16 0.0 0.0 0.0 1.756640139958191 0.0 17 0.0 0.0 0.0 1.8089870938021109 0.0 18 0.0 0.0 0.0 1.9003857582924786 0.0 19 0.0 0.0 0.0 1.9460115006306655 0.0 20 0.0 0.0 0.0 1.9983584544745852 0.0 21 0.0 0.0 0.0 2.047663692162626 0.0 22 0.0 0.0 0.0 2.105456299124329 0.0 23 0.0 0.0 0.0 2.176544149283504 0.0 24 0.0 0.0 0.0 2.234582055935198 0.0 25 0.0 0.0 0.0 2.2841325933132284 0.0 26 0.0 0.0 0.0 2.338147585049082 0.0 27 0.0 0.0 0.0 2.396430791390766 0.0 28 0.0 0.0 0.0 2.4590803322142762 0.0 29 0.0 0.0 0.0 2.5284510845435193 0.0 30 0.0 0.0 0.0 2.624412323267706 0.0 31 0.0 0.0 0.0 2.7007495867926723 0.0 32 0.0 0.0 0.0 2.7809625854194846 0.0 33 0.0 0.0 0.0 2.8627455020622343 0.0 34 0.0 0.0 0.0 2.943301920255033 0.0 35 0.0 0.0 0.0 3.040587777305167 0.0 36 0.0 0.0 0.0 3.1322808014235233 0.0 37 0.0 0.0 0.0 3.2239247656038814 0.0 38 0.0 0.0 0.0 3.3402458785972584 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 22765 0.0 43.226883 1 TAGGGAC 1740 0.0 38.56322 5 TACGGGA 640 0.0 38.5 4 GTTTTTT 25250 0.0 38.458614 2 AGGGCGA 2030 0.0 36.955666 6 TATCCGT 30 1.3014486E-4 36.666664 44 GGGCGAT 4005 0.0 36.6392 7 GCGCGAC 965 0.0 36.476685 9 CGGTCTA 140 0.0 36.142857 31 ATAGGGA 2285 0.0 35.816193 4 CACGACG 160 0.0 35.75 26 ATAGGGC 1010 0.0 35.722775 4 ACGGGAC 505 0.0 35.722775 5 TAGGGAT 2685 0.0 35.478584 5 TAAGGGA 2385 0.0 35.421383 4 CGCGACC 1000 0.0 35.420002 10 ACGGGAT 870 0.0 35.4023 5 CCGCTGA 960 0.0 35.291664 36 CGGGATT 605 0.0 35.272728 6 CGACCCG 955 0.0 35.246075 32 >>END_MODULE