##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547171_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3707501 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.62455384368069 31.0 30.0 31.0 27.0 34.0 2 30.979238036618195 31.0 31.0 33.0 28.0 34.0 3 31.066087372599494 31.0 31.0 34.0 28.0 34.0 4 34.900248172556125 35.0 35.0 37.0 32.0 37.0 5 34.72115934695635 35.0 35.0 37.0 32.0 37.0 6 34.769083811440645 35.0 35.0 37.0 32.0 37.0 7 35.48151706499877 35.0 35.0 37.0 35.0 37.0 8 34.46121686818156 37.0 35.0 37.0 33.0 37.0 9 36.57261643354917 39.0 37.0 39.0 32.0 39.0 10 35.98292380770767 38.0 35.0 39.0 30.0 39.0 11 35.70777647801039 37.0 35.0 39.0 30.0 39.0 12 35.605193902847226 37.0 35.0 39.0 30.0 39.0 13 35.572625873870294 37.0 35.0 39.0 30.0 39.0 14 36.53978353613391 38.0 35.0 40.0 30.0 41.0 15 36.6511038028041 38.0 35.0 40.0 30.0 41.0 16 36.65554587847717 38.0 35.0 40.0 31.0 41.0 17 36.56249209373106 38.0 35.0 40.0 30.0 41.0 18 36.400256129398215 38.0 35.0 40.0 30.0 41.0 19 36.29401232798049 38.0 35.0 40.0 30.0 41.0 20 36.078407800834036 38.0 34.0 40.0 30.0 41.0 21 35.941212692862386 38.0 34.0 40.0 30.0 41.0 22 35.89424224025833 38.0 34.0 40.0 30.0 41.0 23 35.76671833669094 37.0 34.0 40.0 29.0 41.0 24 35.644786879356204 37.0 34.0 40.0 29.0 41.0 25 35.46762630677645 37.0 34.0 40.0 28.0 41.0 26 35.301965393940556 37.0 34.0 40.0 27.0 41.0 27 35.11269208019094 37.0 33.0 40.0 27.0 41.0 28 35.11457394077574 37.0 33.0 40.0 27.0 41.0 29 34.98289117116894 37.0 33.0 40.0 27.0 41.0 30 34.91199786594798 37.0 33.0 40.0 26.0 41.0 31 34.781987381797066 37.0 33.0 40.0 25.0 41.0 32 34.37686759895682 37.0 33.0 40.0 24.0 41.0 33 34.02362615681021 37.0 33.0 40.0 22.0 41.0 34 33.73390755659945 37.0 33.0 40.0 20.0 41.0 35 33.431777631347906 37.0 32.0 40.0 18.0 41.0 36 33.32259492310319 37.0 32.0 40.0 18.0 41.0 37 33.30928946479043 37.0 32.0 40.0 17.0 41.0 38 33.29736553004301 37.0 32.0 40.0 17.0 41.0 39 33.185950860161604 37.0 31.0 40.0 16.0 41.0 40 33.13662437312896 37.0 31.0 40.0 15.0 41.0 41 33.14622787694461 37.0 31.0 40.0 15.0 41.0 42 32.99418988693462 37.0 31.0 40.0 15.0 41.0 43 33.044361417569405 37.0 31.0 40.0 15.0 41.0 44 32.7524906938663 36.0 31.0 40.0 15.0 41.0 45 32.697347620405225 36.0 31.0 40.0 15.0 41.0 46 32.65559550759393 36.0 31.0 40.0 15.0 41.0 47 32.60553024800263 36.0 31.0 40.0 14.0 41.0 48 32.595320405847495 36.0 31.0 40.0 14.0 41.0 49 32.60640280339776 36.0 31.0 40.0 15.0 41.0 50 32.06928683228946 35.0 30.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 5.0 13 10.0 14 50.0 15 186.0 16 665.0 17 1739.0 18 3863.0 19 7372.0 20 12243.0 21 18451.0 22 26754.0 23 37166.0 24 52022.0 25 72930.0 26 98369.0 27 112938.0 28 114782.0 29 119589.0 30 133858.0 31 156330.0 32 185131.0 33 222548.0 34 286592.0 35 330801.0 36 332777.0 37 393443.0 38 483061.0 39 503821.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.678427868259508 23.584592424924498 27.132912438863805 20.604067267952185 2 35.28705723882475 24.778145710547346 27.247194269131686 12.687602781496215 3 25.96870506575723 24.3308093510966 36.71553965865417 12.984945924491997 4 22.97768766616651 27.37186045263373 35.60141993218613 14.049031949013635 5 20.556083464306553 31.061003085366668 35.400098341173745 12.982815109153039 6 19.11438459490638 39.539301540309765 31.930726384160113 9.41558748062374 7 84.03282966073374 2.617666185390105 12.28868178322811 1.0608223706480457 8 82.42104317706186 4.924206358946363 11.504298987377211 1.1504514766145713 9 79.25257471272428 5.242129401988024 13.401129224240263 2.104166661047428 10 32.12274251578084 38.53641576900451 19.24414855181428 10.09669316340036 11 23.216959348089183 25.144726865886213 36.51707713632444 15.121236649700162 12 23.07090409415938 23.503459607967738 36.5005970328801 16.92503926499278 13 20.24042609833416 26.648570020614965 36.829551765461424 16.281452115589452 14 18.006900065569774 29.647598206986324 35.53647052286702 16.809031204576883 15 17.49971207020578 25.938549982859072 40.59677934004603 15.964958606889116 16 19.62729072763568 24.96662846483386 39.06955116128088 16.33652964624959 17 19.70394613514602 23.93652759635129 35.642849455738514 20.716676812764177 18 20.59144420999482 24.457444515861223 37.07928871765645 17.87182255648751 19 22.42426906965096 25.41655416950663 34.384967124756 17.77420963608641 20 23.767330069499646 25.269339104696126 33.90537183941421 17.057958986390023 21 22.230688541958585 25.593573676716474 35.30709769194937 16.868640089375567 22 21.53021671470891 24.06081616700845 34.82237766085565 19.586589457426985 23 18.778875582231805 27.529513815370514 34.504427645467935 19.18718295692975 24 18.4481676471564 26.17733616255262 37.90572140101918 17.468774789271805 25 18.681370551214957 26.911145809535856 36.3506307887712 18.056852850477988 26 18.785834447515995 28.972048827498632 34.08935021190824 18.152766513077136 27 18.614344271249017 27.608327010565876 35.327839426071634 18.449489292113476 28 17.733805061684407 27.268016920292133 37.58059674157876 17.4175812764447 29 18.500790694324827 25.333937873516422 37.27060356827955 18.8946678638792 30 19.10917893211627 26.48703264004514 36.051183802782525 18.352604625056067 31 21.15578660666578 26.646870762813013 33.80581691009659 18.39152572042462 32 21.394222145860514 27.016176125104213 33.69156205217477 17.898039676860506 33 21.24676432993545 26.833087840030252 33.005925015259606 18.914222814774696 34 19.355921953898328 27.643579866869892 33.52789385626599 19.472604322965793 35 19.67203784975378 27.684847556345904 32.87251979163323 19.77059480226708 36 21.621086548594324 27.95737614096395 31.34334960395156 19.078187706490166 37 20.36967758066687 29.493127581084945 31.548150627606038 18.589044210642154 38 20.034195540338356 29.780652790113884 30.75616163016544 19.42899003938232 39 20.453642493960217 29.610160590651226 30.50566945228066 19.4305274631079 40 21.374856001387457 28.119264162032593 30.795028780841864 19.710851055738082 41 19.54804597490331 27.871010688871024 31.177685454434133 21.403257881791536 42 20.440264210313092 28.767274776190217 29.750740458330288 21.041720555166403 43 20.583325533829928 28.551388118303944 30.307773349218248 20.557512998647876 44 20.13213212889221 29.521151848644138 30.828096877114803 19.518619145348847 45 19.20730432709256 30.15028182055784 30.12854210963126 20.513871742718344 46 20.195004667564486 29.72962111136315 30.46558854603141 19.60978567504095 47 20.44973150378112 28.654773120762478 30.646114458229412 20.249380917226993 48 20.433952681334407 27.65461155640956 31.60271568369098 20.30872007856505 49 20.230877887827948 27.62577811846848 31.68471161572175 20.458632377981825 50 19.486468108842047 29.34132721744377 31.025075920411084 20.1471287533031 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1833.0 1 2652.5 2 3472.0 3 38388.0 4 73304.0 5 56781.0 6 40258.0 7 40517.0 8 40776.0 9 41597.5 10 42419.0 11 41970.5 12 41522.0 13 40296.0 14 39070.0 15 37450.0 16 35830.0 17 34365.5 18 32901.0 19 31629.0 20 30357.0 21 30633.5 22 30910.0 23 32894.5 24 34879.0 25 40924.0 26 46969.0 27 55079.5 28 63190.0 29 73232.5 30 83275.0 31 95534.0 32 107793.0 33 120496.5 34 133200.0 35 147880.0 36 162560.0 37 174548.5 38 186537.0 39 202075.5 40 217614.0 41 236409.5 42 255205.0 43 264476.0 44 273747.0 45 282645.5 46 291544.0 47 287184.0 48 282824.0 49 272126.0 50 261428.0 51 240308.5 52 219189.0 53 198178.0 54 177167.0 55 156617.5 56 136068.0 57 123752.0 58 111436.0 59 98293.5 60 85151.0 61 74104.5 62 63058.0 63 50983.5 64 38909.0 65 31596.0 66 24283.0 67 19722.0 68 15161.0 69 11904.0 70 8647.0 71 7326.5 72 6006.0 73 4945.0 74 3884.0 75 3153.5 76 2423.0 77 2022.0 78 1621.0 79 1058.0 80 495.0 81 377.0 82 259.0 83 234.0 84 209.0 85 141.0 86 73.0 87 48.5 88 24.0 89 17.5 90 11.0 91 7.5 92 4.0 93 4.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3707501.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.65598041943095 #Duplication Level Percentage of deduplicated Percentage of total 1 79.98280831597594 20.520373640457777 2 5.680541429636167 2.914797193810236 3 2.2054412413706936 1.6974827191443602 4 1.354370026467275 1.3899076351883433 5 0.9720645592934449 1.24696346498277 6 0.7181451832843462 1.1054831256391104 7 0.5854858252560752 1.0514849008036964 8 0.508722520261647 1.0441420015005105 9 0.4350387455623121 1.0045210984056434 >10 5.972853867592864 36.60726928154918 >50 1.429047976035041 24.718143948099694 >100 0.15354556399154 5.216198766787264 >500 0.0013973160302555594 0.2435009209589689 >1k 4.299433939231702E-4 0.17875118569097576 >5k 0.0 0.0 >10k+ 1.0748584848079255E-4 1.06098011698158 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38474 1.03773404241833 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014322315759321441 0.0 2 0.0 0.0 0.0 0.06921103999702226 0.0 3 0.0 0.0 0.0 0.14861762680576485 0.0 4 0.0 0.0 0.0 0.22047195671693684 0.0 5 0.0 0.0 0.0 0.34014825619736855 0.0 6 0.0 0.0 0.0 0.6364664500427647 0.0 7 0.0 0.0 0.0 0.7973564943070818 0.0 8 0.0 0.0 0.0 1.1567899779393183 0.0 9 0.0 0.0 0.0 1.3765606536586235 0.0 10 0.0 0.0 0.0 1.646149252555832 0.0 11 0.0 0.0 0.0 1.7991094270777 0.0 12 0.0 0.0 0.0 1.951638044062564 0.0 13 0.0 0.0 0.0 2.054321765523462 0.0 14 0.0 0.0 0.0 2.112797811787509 0.0 15 0.0 0.0 0.0 2.1583001595953717 0.0 16 2.697234606275224E-5 0.0 0.0 2.2308287981581123 0.0 17 2.697234606275224E-5 0.0 0.0 2.3074842056684544 0.0 18 2.697234606275224E-5 0.0 0.0 2.4278617861465177 0.0 19 2.697234606275224E-5 0.0 0.0 2.4876594773676395 0.0 20 2.697234606275224E-5 0.0 0.0 2.560835452235886 0.0 21 2.697234606275224E-5 0.0 0.0 2.6331752843761875 0.0 22 2.697234606275224E-5 0.0 0.0 2.711637839072734 0.0 23 2.697234606275224E-5 0.0 0.0 2.801617585538075 0.0 24 2.697234606275224E-5 0.0 0.0 2.8768974033992167 0.0 25 2.697234606275224E-5 0.0 0.0 2.9433033194057128 0.0 26 2.697234606275224E-5 0.0 0.0 3.0105453781401543 0.0 27 2.697234606275224E-5 0.0 0.0 3.089520407411893 0.0 28 2.697234606275224E-5 0.0 0.0 3.164638391196658 0.0 29 2.697234606275224E-5 0.0 0.0 3.2445844249266553 0.0 30 2.697234606275224E-5 0.0 0.0 3.3588932275405994 0.0 31 2.697234606275224E-5 0.0 0.0 3.451273512805526 0.0 32 2.697234606275224E-5 0.0 0.0 3.5441932449917073 0.0 33 2.697234606275224E-5 0.0 0.0 3.635009134184994 0.0 34 2.697234606275224E-5 0.0 0.0 3.7309767414762667 0.0 35 2.697234606275224E-5 0.0 0.0 3.833741379975353 0.0 36 2.697234606275224E-5 0.0 0.0 3.9292504573835583 0.0 37 2.697234606275224E-5 0.0 0.0 4.032581515149962 0.0 38 2.697234606275224E-5 0.0 0.0 4.141846489050171 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 38390 0.0 43.13467 1 AGGGCGA 4160 0.0 38.817307 6 CGACGGT 225 0.0 38.133335 28 GGGCGAT 7855 0.0 37.83832 7 GTTTTTT 43065 0.0 37.833973 2 AAGGGCG 1665 0.0 36.73273 5 TACGGGA 1530 0.0 36.666668 4 GGCGATT 2515 0.0 36.65209 8 AGGGATT 9125 0.0 36.526028 6 TAGGGAT 8030 0.0 36.49315 5 TAGGGAC 4430 0.0 35.905193 5 TAGGGCG 1720 0.0 35.686047 5 ATAGGGA 6870 0.0 35.64192 4 AGGGATC 5565 0.0 35.579514 6 TGGGCGA 2325 0.0 35.578495 6 CGAGGGA 2865 0.0 35.322865 4 GAGGGAT 7460 0.0 35.30027 5 GCGAACG 75 1.8189894E-12 35.2 1 GTAGGGA 5545 0.0 35.192062 4 AAGGGAT 7505 0.0 35.176548 5 >>END_MODULE