##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547170_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1985533 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.621678914427513 31.0 30.0 31.0 27.0 34.0 2 30.96355336325309 31.0 31.0 33.0 28.0 34.0 3 31.01447822826415 31.0 31.0 34.0 28.0 34.0 4 34.875919463438784 35.0 35.0 37.0 32.0 37.0 5 34.72093991890339 35.0 35.0 37.0 32.0 37.0 6 34.75710804101468 35.0 35.0 37.0 32.0 37.0 7 35.46005682101481 35.0 35.0 37.0 35.0 37.0 8 34.43096236627646 37.0 35.0 37.0 32.0 37.0 9 36.52643950012415 39.0 37.0 39.0 32.0 39.0 10 36.00485411222075 38.0 35.0 39.0 30.0 39.0 11 35.774827716285756 37.0 35.0 39.0 30.0 39.0 12 35.736455148315336 37.0 35.0 39.0 30.0 39.0 13 35.767423155394546 37.0 35.0 39.0 30.0 39.0 14 36.73599683309217 38.0 35.0 40.0 31.0 41.0 15 36.781473790664776 38.0 35.0 40.0 31.0 41.0 16 36.75170395052613 38.0 35.0 40.0 31.0 41.0 17 36.631341307346695 38.0 35.0 40.0 30.0 41.0 18 36.41622677638699 38.0 35.0 40.0 30.0 41.0 19 36.25495068578563 37.0 35.0 40.0 30.0 41.0 20 35.9918570983207 37.0 34.0 40.0 30.0 41.0 21 35.84030182323839 37.0 34.0 40.0 30.0 41.0 22 35.79506157792391 37.0 34.0 40.0 30.0 41.0 23 35.64753192215894 37.0 34.0 40.0 29.0 41.0 24 35.504161351133426 37.0 34.0 40.0 29.0 41.0 25 35.32858078913823 37.0 34.0 40.0 27.0 41.0 26 35.17184353017552 37.0 33.0 40.0 27.0 41.0 27 34.98860356387932 37.0 33.0 40.0 27.0 41.0 28 34.970536374867606 37.0 33.0 40.0 27.0 41.0 29 34.793905213360844 36.0 33.0 40.0 25.0 41.0 30 34.67776108480695 37.0 33.0 40.0 25.0 41.0 31 34.486815379044316 37.0 33.0 40.0 24.0 41.0 32 33.98360037330027 37.0 33.0 40.0 22.0 41.0 33 33.49871193276566 37.0 32.0 40.0 19.0 41.0 34 33.089380534093365 37.0 31.0 40.0 16.0 41.0 35 32.69631680762798 36.0 31.0 40.0 15.0 41.0 36 32.56773521266078 37.0 31.0 40.0 13.0 41.0 37 32.54242714676613 37.0 30.0 40.0 12.0 41.0 38 32.51211186114761 37.0 30.0 40.0 10.0 41.0 39 32.38099291223062 36.0 30.0 40.0 10.0 41.0 40 32.32253203547864 36.0 30.0 40.0 10.0 41.0 41 32.30369074701856 36.0 30.0 40.0 10.0 41.0 42 32.14422374244095 36.0 30.0 40.0 10.0 41.0 43 32.17835412456 36.0 30.0 40.0 10.0 41.0 44 31.879291354009226 36.0 30.0 40.0 10.0 41.0 45 31.82322882571078 36.0 29.0 40.0 10.0 41.0 46 31.76645918249659 36.0 29.0 40.0 10.0 41.0 47 31.70149576964976 35.0 29.0 40.0 10.0 41.0 48 31.690405044892227 35.0 29.0 39.0 10.0 41.0 49 31.689460210432163 35.0 29.0 39.0 10.0 41.0 50 31.18150693038091 35.0 28.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 2.0 12 3.0 13 14.0 14 25.0 15 105.0 16 394.0 17 1090.0 18 2496.0 19 4780.0 20 7844.0 21 11684.0 22 16802.0 23 23304.0 24 32664.0 25 45926.0 26 61919.0 27 70785.0 28 70638.0 29 69703.0 30 74175.0 31 83985.0 32 97391.0 33 115459.0 34 144441.0 35 166830.0 36 179111.0 37 207316.0 38 248856.0 39 247788.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.949590361882677 21.21279273625772 24.67644707995284 24.161169821906764 2 39.41223842665924 22.94698703068647 25.43417812748516 12.206596415169125 3 25.50186776044518 23.78922939079834 38.427565797194 12.281337051562478 4 22.234533498058205 26.290723951704653 38.18501127908728 13.289731271149863 5 19.94189973170932 29.739621552500004 37.58028700605832 12.73819170973235 6 18.187559713185326 37.81624379952386 34.7904064047286 9.205790082562213 7 80.0533660231283 2.530605132223942 16.317633602664877 1.098395241982883 8 77.99210589801328 5.1053294002164655 15.6064895421028 1.2960751596674547 9 74.60963882242199 5.333479725595092 17.61939992938924 2.4374815225936817 10 28.69410883626714 38.11666691009417 23.073048899212452 10.116175354426241 11 21.280029090425593 24.842901125289785 38.72819036500527 15.148879419279357 12 21.861434687814306 22.51773201452708 38.864174002648156 16.756659295010458 13 20.96263320730504 23.58434737674972 39.17149702372109 16.281522392224154 14 18.66934470492306 26.035225805866734 37.929362040318644 17.366067448891556 15 18.082499762028633 24.46325495471493 40.742662045909086 16.71158323734735 16 20.815670150030243 24.18040898841772 39.037679051418436 15.966241810133603 17 20.245243972273443 23.302105782175367 37.87924955163173 18.573400693919467 18 20.887590385050263 22.830292923864775 38.59779716579881 17.684319525286156 19 22.051157044481254 24.739100281889044 36.00771178318366 17.20203089044604 20 23.620710408741633 24.173962356707243 35.79225326398504 16.41307397056609 21 22.93238138071742 24.11498574941842 36.768212867779084 16.18442000208508 22 21.769419093009283 22.56915397528019 36.95375498669627 18.707671945014262 23 19.427831217108956 25.413377667356823 37.119806117551306 18.038984997982908 24 18.981704157019802 24.490552410863984 38.8853773772584 17.642366054857813 25 19.723217896655456 25.891284607206227 36.529385308629976 17.85611218750834 26 19.484893980608735 26.14174632202033 36.231027134779424 18.142332562591506 27 18.865715150541444 24.872313882468838 37.312197782660874 18.94977318432884 28 18.294281686579875 25.648780453409742 38.231749358988246 17.825188501022144 29 19.563109754408515 24.185646876682483 37.578826441061416 18.672416927847586 30 19.892492343365735 24.423265692385872 37.71778157300836 17.966460391240034 31 20.908239752247884 25.057654544145073 36.200707820016085 17.833397883590955 32 21.371490677818 25.12106321073485 35.73891745944288 17.768528652004274 33 21.143390716749607 25.79720407568144 34.56991145450617 18.48949375306278 34 20.503814341035884 26.96248312166053 34.238212107277995 18.29549043002559 35 20.293039702689402 27.68742700322785 33.26295760382729 18.756575690255463 36 21.511201274418507 28.78587260952097 31.212777626964648 18.490148489095876 37 20.995218916029096 29.557151656507347 31.080873498451044 18.366755929012513 38 21.0392373231772 29.152978066846536 31.03977622129675 18.76800838867951 39 21.166910849630803 28.906495132541238 30.285772132722045 19.640821885105915 40 21.884300084662407 27.941414219758627 31.299353876263957 18.874931819315016 41 20.024849750671482 28.523373824559954 31.21544693540727 20.236329489361296 42 20.873589106804065 28.777512134021443 29.998846657295548 20.35005210187894 43 20.706278868193078 28.000441191357684 31.062289067973186 20.230990872476056 44 20.969936032289567 28.466915432783036 30.856450132030037 19.706698402897356 45 20.517009790318266 28.307512390879424 30.733107936256914 20.442369882545393 46 20.738411298124987 28.72875948171096 30.58181354830164 19.951015671862415 47 20.358412577378466 28.61055444558212 31.49532140740043 19.535711569638984 48 20.636876848684963 27.670403866367366 31.723471732779057 19.96924755216861 49 20.687090065992354 27.59319537877235 31.59000631064807 20.12970824458722 50 20.0169425539641 28.01101769650769 32.129810987780104 19.842228761748103 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1115.0 1 1933.5 2 2752.0 3 32521.5 4 62291.0 5 46337.5 6 30384.0 7 30286.5 8 30189.0 9 30192.5 10 30196.0 11 29676.5 12 29157.0 13 28028.0 14 26899.0 15 25474.5 16 24050.0 17 22537.0 18 21024.0 19 20282.0 20 19540.0 21 18677.0 22 17814.0 23 18672.5 24 19531.0 25 20783.5 26 22036.0 27 25489.0 28 28942.0 29 33447.5 30 37953.0 31 43840.5 32 49728.0 33 55694.0 34 61660.0 35 70265.5 36 78871.0 37 83745.0 38 88619.0 39 94836.5 40 101054.0 41 106244.5 42 111435.0 43 117206.0 44 122977.0 45 126851.0 46 130725.0 47 132967.0 48 135209.0 49 134406.5 50 133604.0 51 125676.0 52 117748.0 53 108055.5 54 98363.0 55 90204.0 56 82045.0 57 75536.0 58 69027.0 59 65048.0 60 61069.0 61 53627.5 62 46186.0 63 39609.0 64 33032.0 65 26877.0 66 20722.0 67 17131.0 68 13540.0 69 11492.0 70 9444.0 71 7877.5 72 6311.0 73 5371.0 74 4431.0 75 3649.0 76 2867.0 77 2239.0 78 1611.0 79 1171.5 80 732.0 81 550.0 82 368.0 83 259.0 84 150.0 85 112.5 86 75.0 87 55.5 88 36.0 89 27.0 90 18.0 91 10.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1985533.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.87439865364019 #Duplication Level Percentage of deduplicated Percentage of total 1 73.42353558820561 25.606016506628205 2 6.583475957872184 4.591895301629805 3 3.481018911108337 3.641953236805579 4 2.4580875574794816 3.4289730162036856 5 1.8987658885492777 3.3109159273600426 6 1.573587402049235 3.292674862524661 7 1.268329726074191 3.096256554396152 8 1.1550139304529745 3.2224333008899904 9 0.998519575571049 3.1340492767735526 >10 7.072970650330443 41.80357503439625 >50 0.06379203911446824 1.456035991146609 >100 0.020847666500721663 1.2078685880988795 >500 0.001761520021804589 0.39649205348973177 >1k 1.4679333515038242E-4 0.06291655697080444 >5k 0.0 0.0 >10k+ 1.4679333515038242E-4 1.7479437926860428 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34144 1.7196390087699374 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01954135237238565 0.0 2 0.0 0.0 0.0 0.07418662898073212 0.0 3 0.0 0.0 0.0 0.15361114622622743 0.0 4 0.0 0.0 0.0 0.21087536696695547 0.0 5 0.0 0.0 0.0 0.3151294891598377 0.0 6 0.0 0.0 0.0 0.5772253596389484 0.0 7 0.0 0.0 0.0 0.7317430634494617 0.0 8 0.0 0.0 0.0 1.1122454272983626 0.0 9 0.0 0.0 0.0 1.3429643324991325 0.0 10 0.0 0.0 0.0 1.5935267759337166 0.0 11 0.0 0.0 0.0 1.7107245258577923 0.0 12 0.0 0.0 0.0 1.8220800157942476 0.0 13 0.0 0.0 0.0 1.9077497075092682 0.0 14 0.0 0.0 0.0 1.9608840548104716 0.0 15 0.0 0.0 0.0 1.998204008696909 0.0 16 0.0 0.0 0.0 2.0517412704800173 0.0 17 0.0 0.0 0.0 2.10276031675122 0.0 18 0.0 0.0 0.0 2.192811703456956 0.0 19 0.0 0.0 0.0 2.2352184526774423 0.0 20 0.0 0.0 0.0 2.2885038929093597 0.0 21 0.0 0.0 0.0 2.3394222105600866 0.0 22 0.0 0.0 0.0 2.397089345782719 0.0 23 0.0 0.0 0.0 2.459037447375591 0.0 24 0.0 0.0 0.0 2.5117185158846516 0.0 25 0.0 0.0 0.0 2.5627879264660924 0.0 26 0.0 0.0 0.0 2.6130011437734857 0.0 27 0.0 0.0 0.0 2.6810433269051686 0.0 28 0.0 0.0 0.0 2.7435454359106597 0.0 29 0.0 0.0 0.0 2.8095226823225805 0.0 30 0.0 0.0 0.0 2.906776165392366 0.0 31 0.0 0.0 0.0 2.9807109728219072 0.0 32 0.0 0.0 0.0 3.0704098093559766 0.0 33 0.0 0.0 0.0 3.151395620218853 0.0 34 0.0 0.0 0.0 3.23076977315411 0.0 35 0.0 0.0 0.0 3.3102446547098436 0.0 36 0.0 0.0 0.0 3.392691030569625 0.0 37 0.0 0.0 0.0 3.482893510206076 0.0 38 0.0 0.0 0.0 3.574707647770145 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 27760 0.0 43.15994 1 GTTTTTT 30545 0.0 38.770992 2 TACGGGA 900 0.0 37.4 4 ACGGGAC 760 0.0 37.342106 5 CGGTCTA 95 0.0 37.05263 31 TGGGCGA 1365 0.0 36.90843 6 GGGCGAT 4055 0.0 36.892727 7 CGAATAT 185 0.0 36.864864 14 TAGGGAC 2145 0.0 36.820515 5 TAGTACG 60 1.9826984E-10 36.666664 1 CGTTAGG 265 0.0 36.5283 2 AACGGGA 995 0.0 36.040203 4 AGGGCGA 1855 0.0 35.93531 6 TAGGGAT 3785 0.0 35.80449 5 AGGGATT 4455 0.0 35.703705 6 AAGGGAT 3950 0.0 35.701263 5 GTAGGGA 2850 0.0 35.66316 4 ATAGGGA 3485 0.0 35.414635 4 CGGGACA 640 0.0 35.40625 6 AGGGATC 2805 0.0 35.372547 6 >>END_MODULE