##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547169_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3090545 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.634027331748932 31.0 30.0 31.0 28.0 34.0 2 30.96752288026869 31.0 31.0 33.0 28.0 34.0 3 31.108655269539838 31.0 31.0 34.0 28.0 34.0 4 34.9266495068022 35.0 35.0 37.0 32.0 37.0 5 34.724638858194915 35.0 35.0 37.0 32.0 37.0 6 34.76583612275505 35.0 35.0 37.0 32.0 37.0 7 35.48175095331082 35.0 35.0 37.0 35.0 37.0 8 34.466844844517716 37.0 35.0 37.0 33.0 37.0 9 36.57572725846089 39.0 37.0 39.0 32.0 39.0 10 35.91725601795152 38.0 35.0 39.0 30.0 39.0 11 35.682614878605555 37.0 35.0 39.0 30.0 39.0 12 35.34173260703209 37.0 34.0 39.0 30.0 39.0 13 35.157371919839385 37.0 34.0 39.0 29.0 39.0 14 36.083863525688834 38.0 34.0 40.0 29.0 41.0 15 36.30033990768619 38.0 34.0 40.0 30.0 41.0 16 36.37636436291981 38.0 34.0 40.0 30.0 41.0 17 36.31415688818639 38.0 34.0 40.0 30.0 41.0 18 36.22914987486026 38.0 34.0 40.0 30.0 41.0 19 36.19614113368354 38.0 34.0 40.0 30.0 41.0 20 36.046528039552896 38.0 34.0 40.0 30.0 41.0 21 35.886318432509476 38.0 34.0 40.0 29.0 41.0 22 35.836432732738075 38.0 34.0 40.0 29.0 41.0 23 35.722334410273916 37.0 34.0 40.0 29.0 41.0 24 35.65168602948671 37.0 34.0 40.0 29.0 41.0 25 35.477887233481475 37.0 34.0 40.0 29.0 41.0 26 35.30083011248825 37.0 34.0 40.0 27.0 41.0 27 35.10812138312175 37.0 33.0 40.0 27.0 41.0 28 35.13693118851206 37.0 34.0 40.0 27.0 41.0 29 35.05420111986721 37.0 33.0 40.0 27.0 41.0 30 35.039151347092506 37.0 33.0 40.0 27.0 41.0 31 34.956506700274545 37.0 33.0 40.0 26.0 41.0 32 34.69252769333564 37.0 33.0 40.0 25.0 41.0 33 34.50214832658965 37.0 33.0 40.0 24.0 41.0 34 34.39563216196496 37.0 33.0 40.0 24.0 41.0 35 34.16688674651235 37.0 33.0 40.0 23.0 41.0 36 34.09814935553438 37.0 33.0 40.0 23.0 41.0 37 34.07665444120697 37.0 33.0 40.0 23.0 41.0 38 34.11656973122864 37.0 33.0 40.0 23.0 41.0 39 34.022434877990776 37.0 33.0 40.0 23.0 41.0 40 33.967567532587296 37.0 33.0 40.0 23.0 41.0 41 34.003374485729864 37.0 33.0 40.0 23.0 41.0 42 33.85187661075959 37.0 33.0 40.0 22.0 41.0 43 33.903956421925585 37.0 33.0 40.0 23.0 41.0 44 33.53963783086802 36.0 32.0 40.0 21.0 41.0 45 33.50317500635001 36.0 32.0 40.0 21.0 41.0 46 33.47301204156548 36.0 32.0 40.0 21.0 41.0 47 33.43410337011757 36.0 32.0 40.0 21.0 41.0 48 33.431056981859186 36.0 32.0 40.0 21.0 41.0 49 33.45480910324878 36.0 32.0 40.0 22.0 41.0 50 32.86256501684978 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 3.0 12 4.0 13 10.0 14 37.0 15 128.0 16 431.0 17 1135.0 18 2481.0 19 4539.0 20 7996.0 21 12070.0 22 17609.0 23 25150.0 24 35088.0 25 47569.0 26 62788.0 27 74391.0 28 83360.0 29 95372.0 30 113088.0 31 136403.0 32 164947.0 33 201390.0 34 272130.0 35 310634.0 36 277320.0 37 326992.0 38 401594.0 39 415884.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.036629461793957 24.45296865116023 28.877107435743532 15.633294451302278 2 31.709908770136014 26.52858961768879 28.935252520186573 12.826249091988629 3 27.054742771905925 26.530239812071983 32.70241979974406 13.712597616278035 4 24.022009063126408 28.884646559102034 32.46653907320554 14.626805304566023 5 21.62430898110204 32.81686563373127 31.814129870297958 13.744695514868738 6 19.91396339480577 41.72820651373787 28.522250929852177 9.835579161604183 7 88.76508835820219 3.085669356052088 7.097971393395016 1.051270892350702 8 87.27787493791548 5.140743784672282 6.417573599478408 1.1638076779338271 9 84.0387375042266 5.573288853584077 8.319503517987927 2.068470124201395 10 36.453311632737915 36.85453536512169 15.525028757063883 11.167124245076515 11 30.734449749154276 25.385684401942054 28.9877998864278 14.892065962475872 12 28.1628644785952 24.343667540838265 30.553672572313296 16.939795408253236 13 21.071590932990784 31.71938929865121 31.667036072925647 15.54198369543236 14 18.601897076405617 34.5927012873134 31.11079113877973 15.694610497501248 15 17.600326156066327 26.79381791884603 40.38795746381302 15.217898461274629 16 19.76881100259016 24.3326015314451 38.93721010371957 16.96137736224517 17 19.72406161372832 24.143023317893768 31.28221721411596 24.85069785426195 18 21.812560567796293 24.946376771734435 33.92155752464372 19.31950513582556 19 25.06645268067606 26.311087526633653 30.15089571580417 18.471564076886114 20 26.481898823670257 26.002501176976878 29.565529704307814 17.950070295045048 21 23.285148735902567 27.6351258435001 31.20009577598773 17.879629644609608 22 22.820764622420963 25.114826025830396 30.39680703565229 21.667602316096353 23 19.431459499861674 29.64490081846406 30.332384741202606 20.591254940471664 24 19.095175769969373 26.685390440844575 36.18860103962246 18.03083274956359 25 18.841951824031035 28.04945406069156 34.18697996631662 18.92161414896078 26 18.825320453188677 31.879619937583826 30.37816954614801 18.91689006307949 27 19.05993926637535 30.554999199170375 31.60005759501965 18.78500393943463 28 17.55010847601313 28.49976298678712 35.99834333426629 17.95178520293346 29 18.419534418686673 26.51991800798888 35.034856311750836 20.025691261573606 30 19.402856130553026 29.071377378423545 32.75490245248007 18.770864038543365 31 23.694429299686625 27.721712513488722 29.598986586508204 18.98487160031645 32 24.610513679626088 27.41092590465436 30.01913901916976 17.9594213965498 33 23.647285511131532 28.622556862948123 28.863517599646666 18.866640026273686 34 20.368058060956887 28.414761797676462 30.22923141387684 20.98794872748981 35 20.663475212300746 28.045830104399062 31.302181330477314 19.988513352822885 36 24.538681688828344 27.660687678063255 28.913023431142403 18.887607201966 37 20.99966187193521 30.888338464575014 29.953163600594717 18.158836062895055 38 20.62306162828886 31.364953430543803 27.613479176002937 20.398505765164394 39 20.976882718096647 30.6321053406438 28.728719368266763 19.66229257299279 40 22.0151785526501 28.38062542367123 28.52991948022113 21.074276543457547 41 19.578035589192197 27.598206788770263 29.25335175511115 23.570405866926382 42 21.089128292906267 28.180757762789412 27.83331095324611 22.896802991058212 43 20.929641859283716 28.56486477304165 28.967123921508993 21.538369446165646 44 20.236495504838143 30.01693875999217 29.661467475801196 20.085098259368493 45 19.425376430370694 32.009758796587654 27.816420728382855 20.74844404465879 46 21.322873473772425 30.909046786246442 27.998945169864864 19.76913457011627 47 21.223214675728713 28.616020798920577 29.079207712555554 21.081556812795156 48 21.461910439744447 26.99394443374874 31.154149187279266 20.38999593922755 49 21.008074627614224 26.74612406549654 31.362720814613603 20.883080492275635 50 19.84106363117185 30.9586173312474 29.045783187107777 20.154535850472975 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1971.0 1 2441.0 2 2911.0 3 16729.5 4 30548.0 5 23758.5 6 16969.0 7 17099.0 8 17229.0 9 17897.0 10 18565.0 11 18828.5 12 19092.0 13 19031.5 14 18971.0 15 18877.0 16 18783.0 17 18216.0 18 17649.0 19 17658.0 20 17667.0 21 19785.5 22 21904.0 23 24656.0 24 27408.0 25 32675.0 26 37942.0 27 42833.0 28 47724.0 29 55674.0 30 63624.0 31 73881.5 32 84139.0 33 97043.5 34 109948.0 35 121291.0 36 132634.0 37 140228.5 38 147823.0 39 166307.0 40 184791.0 41 209551.5 42 234312.0 43 254184.0 44 274056.0 45 270940.0 46 267824.0 47 254043.0 48 240262.0 49 237160.5 50 234059.0 51 222383.5 52 210708.0 53 189343.0 54 167978.0 55 144469.0 56 120960.0 57 108250.5 58 95541.0 59 83802.5 60 72064.0 61 62292.0 62 52520.0 63 43674.0 64 34828.0 65 27651.0 66 20474.0 67 15972.5 68 11471.0 69 8566.0 70 5661.0 71 4747.5 72 3834.0 73 3120.0 74 2406.0 75 1971.5 76 1537.0 77 1082.5 78 628.0 79 632.5 80 637.0 81 496.0 82 355.0 83 215.5 84 76.0 85 59.0 86 42.0 87 27.5 88 13.0 89 7.5 90 2.0 91 2.0 92 2.0 93 2.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3090545.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.94737650324748 #Duplication Level Percentage of deduplicated Percentage of total 1 81.77746676662242 17.948008526088703 2 5.861565737476198 2.572919802778512 3 2.0398173167641844 1.3430591594660273 4 1.1511792621761494 1.0106145875884236 5 0.7653383868561014 0.8398584864359465 6 0.5743927555589581 0.7563848440194149 7 0.4834608793727961 0.7427488560930107 8 0.39672664963231297 0.6965687318681857 9 0.31702571517075795 0.6262094458857529 >10 4.199469366343831 22.050621134430354 >50 1.6054288164556194 25.637695931674543 >100 0.8269183609011466 24.939592135128414 >500 7.562416684834811E-4 0.09268055517363531 >1k 3.024966673933924E-4 0.20570967063431875 >5k 0.0 0.0 >10k+ 1.512483336966962E-4 0.5373281327348262 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16187 0.5237587545238784 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4692 0.1518178832536009 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.015369457490507337 0.0 2 0.0 0.0 0.0 0.0687257425470265 0.0 3 0.0 0.0 0.0 0.12366750848151378 0.0 4 0.0 0.0 0.0 0.19242560778115186 0.0 5 0.0 0.0 0.0 0.29587014588041916 0.0 6 0.0 0.0 0.0 0.5353748287114408 0.0 7 0.0 0.0 0.0 0.6524092029075778 0.0 8 0.0 0.0 0.0 0.9593777149337738 0.0 9 0.0 0.0 0.0 1.1309979307856706 0.0 10 0.0 0.0 0.0 1.3768121803759532 0.0 11 0.0 0.0 0.0 1.5545801792240528 0.0 12 0.0 0.0 0.0 1.7216380929577146 0.0 13 0.0 0.0 0.0 1.8164110213570746 0.0 14 0.0 0.0 0.0 1.860480918414066 0.0 15 0.0 0.0 0.0 1.903159475108759 0.0 16 0.0 0.0 0.0 1.985733907773548 0.0 17 0.0 0.0 0.0 2.0784683607583774 0.0 18 0.0 0.0 0.0 2.2124900300756014 0.0 19 0.0 0.0 0.0 2.2728677304488367 0.0 20 3.23567526115944E-5 0.0 0.0 2.3439878726891212 0.0 21 3.23567526115944E-5 0.0 0.0 2.4236501976188665 0.0 22 3.23567526115944E-5 0.0 0.0 2.51625522359325 0.0 23 3.23567526115944E-5 0.0 0.0 2.620961675044369 0.0 24 3.23567526115944E-5 0.0 0.0 2.70275954564648 0.0 25 3.23567526115944E-5 0.0 0.0 2.777341860416205 0.0 26 3.23567526115944E-5 0.0 0.0 2.8496268457505067 0.0 27 3.23567526115944E-5 0.0 0.0 2.928480251864962 0.0 28 3.23567526115944E-5 0.0 0.0 3.010504619735354 0.0 29 3.23567526115944E-5 0.0 0.0 3.1023977971522823 0.0 30 3.23567526115944E-5 0.0 0.0 3.224253327487547 0.0 31 3.23567526115944E-5 0.0 0.0 3.318929185629072 0.0 32 3.23567526115944E-5 0.0 0.0 3.4118901358821825 0.0 33 3.23567526115944E-5 0.0 0.0 3.506468923765873 0.0 34 6.47135052231888E-5 0.0 0.0 3.608263267481949 0.0 35 6.47135052231888E-5 0.0 0.0 3.7235180202844482 0.0 36 6.47135052231888E-5 0.0 0.0 3.8230473913177128 0.0 37 6.47135052231888E-5 0.0 0.0 3.9338692690124235 0.0 38 6.47135052231888E-5 0.0 0.0 4.048768097536195 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTACT 30 2.5291101E-6 44.000004 18 TACGCCC 25 4.4445915E-5 44.0 29 TCGACAC 25 4.4445915E-5 44.0 26 CGTTTTT 15715 0.0 41.872093 1 GCGAACG 135 0.0 39.11111 1 AGGGCGA 3505 0.0 38.85307 6 ACCGTAC 35 7.2942003E-6 37.714287 16 TAGGGAT 6220 0.0 37.067524 5 ACGGGAC 940 0.0 36.74468 5 TCGATCT 30 1.3016038E-4 36.666668 17 TCCTACG 30 1.3016038E-4 36.666668 1 ATCCGGT 60 1.9826984E-10 36.666668 35 ATCCGCG 30 1.3016038E-4 36.666668 1 GGGCGAT 6890 0.0 36.65602 7 TAGTGCG 235 0.0 36.510635 1 GACCGAT 2220 0.0 36.468468 9 GGCGATA 1585 0.0 36.08833 8 AGGGATC 4305 0.0 36.07898 6 GCGCGAC 220 0.0 36.0 9 GGGACCG 2530 0.0 36.0 7 >>END_MODULE