##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547168_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 395878 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.5920712946918 31.0 30.0 31.0 27.0 33.0 2 30.917939365157952 31.0 31.0 33.0 28.0 34.0 3 31.057590974997346 31.0 31.0 34.0 28.0 34.0 4 34.88613158599367 35.0 35.0 37.0 32.0 37.0 5 34.69130136052016 35.0 35.0 37.0 32.0 37.0 6 34.73902060735883 35.0 35.0 37.0 32.0 37.0 7 35.42421149950237 35.0 35.0 37.0 35.0 37.0 8 34.38624778340802 36.0 35.0 37.0 33.0 37.0 9 36.499843386093694 39.0 37.0 39.0 32.0 39.0 10 35.92652786969723 38.0 35.0 39.0 30.0 39.0 11 35.63048211822834 37.0 35.0 39.0 30.0 39.0 12 35.45180333335017 37.0 35.0 39.0 30.0 39.0 13 35.35729189295692 37.0 35.0 39.0 30.0 39.0 14 36.29550770691981 38.0 35.0 40.0 30.0 41.0 15 36.4291195772435 38.0 35.0 40.0 30.0 41.0 16 36.458684241104585 38.0 35.0 40.0 30.0 41.0 17 36.38044801681326 38.0 34.0 40.0 30.0 41.0 18 36.253979761441656 38.0 34.0 40.0 30.0 41.0 19 36.21940597860957 38.0 34.0 40.0 30.0 41.0 20 36.056464365284256 38.0 34.0 40.0 30.0 41.0 21 35.921086799468526 38.0 34.0 40.0 29.0 41.0 22 35.868206871814046 38.0 34.0 40.0 29.0 41.0 23 35.73352901651519 37.0 34.0 40.0 29.0 41.0 24 35.6445369533038 37.0 34.0 40.0 29.0 41.0 25 35.45251820005153 37.0 34.0 40.0 27.0 41.0 26 35.29557338371923 37.0 34.0 40.0 27.0 41.0 27 35.08371265895048 37.0 33.0 40.0 27.0 41.0 28 35.09937152355018 37.0 33.0 40.0 27.0 41.0 29 34.95953298743552 37.0 33.0 40.0 26.0 41.0 30 34.95955572171224 37.0 33.0 40.0 26.0 41.0 31 34.90087097540151 37.0 33.0 40.0 25.0 41.0 32 34.62034010477976 37.0 33.0 40.0 24.0 41.0 33 34.395424853111315 37.0 33.0 40.0 24.0 41.0 34 34.257389902949896 37.0 33.0 40.0 23.0 41.0 35 34.00308680957264 37.0 33.0 40.0 23.0 41.0 36 33.94962589484639 37.0 33.0 40.0 22.0 41.0 37 33.9508611238816 37.0 33.0 40.0 22.0 41.0 38 33.96897529036723 37.0 33.0 40.0 22.0 41.0 39 33.86005537059397 37.0 33.0 40.0 21.0 41.0 40 33.80642521180768 37.0 32.0 40.0 21.0 41.0 41 33.83057406574753 37.0 33.0 40.0 21.0 41.0 42 33.68030302264839 37.0 32.0 40.0 20.0 41.0 43 33.73463794401305 37.0 32.0 40.0 21.0 41.0 44 33.4462182793689 37.0 32.0 40.0 19.0 41.0 45 33.360833388064 36.0 31.0 40.0 19.0 41.0 46 33.324170577804274 36.0 31.0 40.0 20.0 41.0 47 33.26641035874689 36.0 31.0 40.0 19.0 41.0 48 33.267506656091015 36.0 31.0 40.0 20.0 41.0 49 33.26927992967531 36.0 31.0 40.0 20.0 41.0 50 32.70822829255478 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 15.0 16 55.0 17 155.0 18 360.0 19 691.0 20 1145.0 21 1693.0 22 2337.0 23 3478.0 24 4794.0 25 6558.0 26 8479.0 27 10109.0 28 11136.0 29 12673.0 30 14682.0 31 17314.0 32 20444.0 33 24995.0 34 32694.0 35 37389.0 36 36154.0 37 42633.0 38 52828.0 39 53064.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.493288336305632 23.82526940117915 27.288710158180045 17.392732104335174 2 32.44610713401603 25.21963837343828 28.854091412000667 13.480163080545015 3 26.971693299450838 25.888783918277852 34.01123578476197 13.128286997509333 4 23.848003677900767 28.792961467926986 33.31051485558682 14.048519998585423 5 21.11307018829033 33.102117318972006 32.62368709551933 13.161125397218335 6 19.902848857476293 41.49839091841426 29.116798609672678 9.48196161443677 7 87.61133480516725 2.889779174392111 8.418755273089184 1.0801307473514568 8 85.87115222366486 5.156639166611936 7.8385260105386 1.1336825991845974 9 82.52769792713917 5.634058977765878 9.598159028791699 2.240084066303255 10 34.795063125508364 40.1045271523045 15.069289023385993 10.031120698801146 11 25.90065626278803 24.756111731391993 33.14531244474308 16.197919561076898 12 26.385401563107823 23.846740662527345 32.72775956228939 17.04009821207544 13 21.760491868707028 28.31074219835404 33.15693218617857 16.771833746760365 14 18.76664022754485 31.474848311853656 32.35870647017515 17.399804990426343 15 17.987612345217467 25.983004865135218 39.41997281990916 16.609409969738152 16 20.487624975371197 24.954405145019425 37.64897266329526 16.908997216314116 17 20.972875481840365 23.902313338957963 32.79596239245424 22.328848786747432 18 21.716286330637217 24.927124012953485 34.44874431011574 18.907845346293556 19 24.30900428920021 25.4838611895584 31.30762507641243 18.89950944482896 20 25.640475095862868 26.04514522150764 30.5227873233673 17.791592359262197 21 23.59135895402119 26.178267041866434 32.34834974411309 17.882024259999294 22 22.808794628648222 24.544935560955647 31.80954738581078 20.836722424585354 23 19.80534407064803 27.617094155270056 32.655767686004275 19.92179408807764 24 19.859148525555852 26.67564249592046 35.319972314703016 18.145236663820672 25 19.6201860169042 27.87677011604585 33.59292509308423 18.910118773965717 26 19.969536069193033 29.470442914231153 31.20380521271705 19.356215803858763 27 19.156154168708543 28.774268840400325 32.452169607808464 19.617407383082668 28 18.534245398834994 27.696158917646347 35.28182925042563 18.48776643309302 29 19.396127089658936 25.823107118859852 35.18003021132773 19.60073558015348 30 20.24840986364486 26.875451527996 33.89806960730326 18.978069001055882 31 22.757263601412557 26.842613128286995 30.984545743890795 19.415577526409653 32 23.423377909355914 27.177312202244124 31.06057926937087 18.338730619029096 33 22.34299455892977 27.646901318082843 30.634943088527272 19.375161034460113 34 20.716988567184842 27.4882665871809 31.452619241281404 20.342125604352855 35 20.103920904925253 28.147308009033082 31.826471791814647 19.92229929422701 36 22.778482259686065 28.359747194842853 29.717488721272716 19.144281824198366 37 20.68541318284926 29.91805556257231 30.484896862164607 18.911634392413827 38 20.581340716079197 30.703903727916178 28.831862341428423 19.882893214576207 39 20.600538549755225 30.585938092038457 29.14205891714114 19.671464441065176 40 21.791562046893233 28.160695971991373 29.283011432815158 20.764730548300232 41 19.32363000722445 28.115732624697507 29.82762366183521 22.733013706242833 42 20.720019804081055 28.89905475929453 28.70101394874178 21.67991148788263 43 21.036278853586207 28.385765311535373 29.537635332097263 21.04032050278116 44 20.61266349734009 29.537382729022575 29.83899080019602 20.010962973441313 45 19.936950272558718 30.52884979715973 28.85737525197157 20.676824678309984 46 21.069117253295207 30.01202390635499 29.11957724349421 19.799281596855597 47 20.488887990744622 28.8732892456767 29.88294373519114 20.75487902838753 48 21.37678779826108 27.467805738131446 30.49070673288235 20.664699730725122 49 21.06532820717494 27.52994609450386 30.817827714598945 20.586897983722256 50 20.350714108892134 29.714204881301814 29.661916044842094 20.273164964963954 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 239.0 1 325.5 2 412.0 3 3086.0 4 5760.0 5 4286.5 6 2813.0 7 2846.5 8 2880.0 9 2973.0 10 3066.0 11 3024.5 12 2983.0 13 2903.5 14 2824.0 15 2738.0 16 2652.0 17 2468.0 18 2284.0 19 2271.0 20 2258.0 21 2457.5 22 2657.0 23 3026.0 24 3395.0 25 4004.0 26 4613.0 27 5291.5 28 5970.0 29 7201.5 30 8433.0 31 9608.5 32 10784.0 33 12338.5 34 13893.0 35 15637.5 36 17382.0 37 18607.0 38 19832.0 39 22157.0 40 24482.0 41 26377.0 42 28272.0 43 29671.0 44 31070.0 45 31775.5 46 32481.0 47 31326.0 48 30171.0 49 29057.0 50 27943.0 51 25487.0 52 23031.0 53 21719.5 54 20408.0 55 18547.5 56 16687.0 57 15099.0 58 13511.0 59 12099.0 60 10687.0 61 9318.0 62 7949.0 63 6782.5 64 5616.0 65 4499.0 66 3382.0 67 2669.0 68 1956.0 69 1587.5 70 1219.0 71 999.0 72 779.0 73 631.0 74 483.0 75 392.0 76 301.0 77 229.0 78 157.0 79 127.5 80 98.0 81 65.0 82 32.0 83 22.5 84 13.0 85 10.5 86 8.0 87 5.5 88 3.0 89 2.5 90 2.0 91 4.5 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 395878.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.110643074157515 #Duplication Level Percentage of deduplicated Percentage of total 1 70.42668210234832 28.95286190806799 2 7.624510836238143 6.268970872072649 3 4.4674602706943585 5.509804939094845 4 3.2591808313394908 5.359480794853351 5 2.617897408471026 5.381172298220714 6 2.1540971809098517 5.313379221086029 7 1.8028057631316756 5.188015298209833 8 1.5222569025632062 5.006476815075884 9 1.2343560725371723 4.567065473204511 >10 4.877396249438937 27.202845085144077 >50 0.01032084088966495 0.2600687382905141 >100 0.002428433150509399 0.17471028484007656 >500 0.0 0.0 >1k 6.071082876273498E-4 0.8151482718395572 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3266 0.8250016419199855 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011619741435492752 0.0 2 0.0 0.0 0.0 0.05077321801160964 0.0 3 0.0 0.0 0.0 0.09598916838015753 0.0 4 0.0 0.0 0.0 0.14474156179429015 0.0 5 0.0 0.0 0.0 0.2235537210958932 0.0 6 0.0 0.0 0.0 0.41275342403467735 0.0 7 0.0 0.0 0.0 0.5155628754313197 0.0 8 0.0 0.0 0.0 0.7820591192235992 0.0 9 0.0 0.0 0.0 0.9172017641798736 0.0 10 0.0 0.0 0.0 1.0839197934717262 0.0 11 0.0 0.0 0.0 1.1839506110468376 0.0 12 0.0 0.0 0.0 1.2945907577587035 0.0 13 0.0 0.0 0.0 1.3531946710855365 0.0 14 0.0 0.0 0.0 1.389822116914807 0.0 15 0.0 0.0 0.0 1.4219027073997546 0.0 16 0.0 0.0 0.0 1.4731811315607333 0.0 17 0.0 0.0 0.0 1.5267329833938739 0.0 18 0.0 0.0 0.0 1.6199435179525006 0.0 19 0.0 0.0 0.0 1.6651594683210484 0.0 20 0.0 0.0 0.0 1.715932686332658 0.0 21 0.0 0.0 0.0 1.7667059043442677 0.0 22 0.0 0.0 0.0 1.82909886379137 0.0 23 0.0 0.0 0.0 1.8919970293878416 0.0 24 0.0 0.0 0.0 1.9420124381753974 0.0 25 0.0 0.0 0.0 1.9884914039173684 0.0 26 0.0 0.0 0.0 2.0415380496011397 0.0 27 0.0 0.0 0.0 2.100647169077342 0.0 28 0.0 0.0 0.0 2.166576571570029 0.0 29 0.0 0.0 0.0 2.2292221340918164 0.0 30 0.0 0.0 0.0 2.31409676718585 0.0 31 0.0 0.0 0.0 2.389119880367184 0.0 32 0.0 0.0 0.0 2.4646481996978866 0.0 33 0.0 0.0 0.0 2.5389135036551664 0.0 34 0.0 0.0 0.0 2.6184834721808232 0.0 35 0.0 0.0 0.0 2.698306043781165 0.0 36 0.0 0.0 0.0 2.780654646128353 0.0 37 0.0 0.0 0.0 2.859972011579325 0.0 38 0.0 0.0 0.0 2.938026361656874 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 20 7.85022E-4 44.000004 6 CGCGCGG 30 2.523495E-6 44.000004 2 ATTAACG 30 2.523495E-6 44.000004 1 CGACAGG 20 7.85022E-4 44.000004 2 GCCGATA 20 7.85022E-4 44.000004 9 CGGGATA 80 0.0 44.000004 6 CGACGGT 25 4.437536E-5 44.0 28 GTTAGCG 25 4.437536E-5 44.0 1 GCGTTGG 35 1.4428588E-7 44.0 2 CGAATAT 35 1.4428588E-7 44.0 14 ATAACGG 25 4.437536E-5 44.0 2 CGTTTTT 2730 0.0 42.71062 1 CGTAAGG 65 0.0 40.615387 2 GCGAAAG 55 7.8216544E-11 40.000004 1 GGCCGGT 45 2.3443135E-8 39.11111 9 CACGCCG 45 2.3443135E-8 39.11111 26 CGCTAGG 45 2.3443135E-8 39.11111 2 ACGTAGG 45 2.3443135E-8 39.11111 2 CGCGACC 40 4.115409E-7 38.500004 10 CGGGACG 40 4.115409E-7 38.500004 6 >>END_MODULE