##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547166_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3458779 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.584074033061956 31.0 30.0 31.0 28.0 33.0 2 30.911350219253674 31.0 31.0 33.0 28.0 34.0 3 31.09023097457224 31.0 31.0 34.0 28.0 34.0 4 34.91927613761966 35.0 35.0 37.0 32.0 37.0 5 34.709544900093356 35.0 35.0 37.0 32.0 37.0 6 34.74164033030153 35.0 35.0 37.0 32.0 37.0 7 35.3647729444408 35.0 35.0 37.0 33.0 37.0 8 34.33030442245659 35.0 35.0 37.0 32.0 37.0 9 36.43339629389446 39.0 37.0 39.0 32.0 39.0 10 35.863783144283 37.0 35.0 39.0 30.0 39.0 11 35.62154448144851 37.0 35.0 39.0 30.0 39.0 12 35.08074323337802 37.0 34.0 39.0 30.0 39.0 13 34.788891397802516 37.0 33.0 39.0 27.0 39.0 14 35.64889864313389 38.0 33.0 40.0 27.0 41.0 15 35.91227655771011 38.0 34.0 40.0 29.0 41.0 16 36.05545829901246 38.0 34.0 40.0 30.0 41.0 17 35.97504784202749 38.0 34.0 40.0 30.0 41.0 18 35.92576975863448 38.0 34.0 40.0 30.0 41.0 19 35.88880295618772 37.0 34.0 40.0 29.0 41.0 20 35.74100571328784 37.0 34.0 40.0 29.0 41.0 21 35.55222348695884 37.0 34.0 40.0 29.0 41.0 22 35.49485902395036 37.0 34.0 40.0 29.0 41.0 23 35.38591682209242 37.0 34.0 40.0 28.0 41.0 24 35.29499369575217 37.0 34.0 40.0 27.0 41.0 25 35.08693703760778 37.0 33.0 40.0 27.0 41.0 26 34.884987737001985 36.0 33.0 40.0 27.0 41.0 27 34.684240305610736 36.0 33.0 40.0 26.0 41.0 28 34.69453295512665 36.0 33.0 40.0 26.0 41.0 29 34.5163186199523 36.0 33.0 40.0 25.0 41.0 30 34.53119641353206 36.0 33.0 40.0 25.0 41.0 31 34.465343984105374 36.0 33.0 40.0 25.0 41.0 32 34.24004511418625 36.0 33.0 40.0 24.0 41.0 33 34.12250305671452 36.0 33.0 40.0 24.0 41.0 34 34.002292716591604 36.0 33.0 40.0 23.0 41.0 35 33.81712853003907 36.0 32.0 40.0 23.0 41.0 36 33.70418491612214 36.0 32.0 40.0 23.0 41.0 37 33.699288101379125 36.0 32.0 40.0 23.0 41.0 38 33.68614300017434 36.0 32.0 40.0 23.0 41.0 39 33.58292622916931 35.0 32.0 40.0 23.0 41.0 40 33.4599478602131 35.0 32.0 39.0 22.0 41.0 41 33.4726890616602 35.0 32.0 39.0 22.0 41.0 42 33.30526957634471 35.0 31.0 39.0 22.0 41.0 43 33.32988028434312 35.0 32.0 39.0 22.0 41.0 44 33.017759157205475 35.0 31.0 39.0 21.0 41.0 45 32.93006173565874 35.0 31.0 39.0 21.0 41.0 46 32.87219449406857 35.0 31.0 39.0 21.0 40.0 47 32.77503217175772 35.0 31.0 39.0 20.0 40.0 48 32.772601834346744 35.0 31.0 39.0 21.0 40.0 49 32.770286277325035 35.0 31.0 39.0 21.0 40.0 50 32.173868003708826 35.0 30.0 38.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 7.0 12 10.0 13 18.0 14 67.0 15 216.0 16 617.0 17 1373.0 18 3119.0 19 5785.0 20 9775.0 21 15417.0 22 22662.0 23 31243.0 24 42559.0 25 56985.0 26 72805.0 27 88319.0 28 102595.0 29 118643.0 30 141242.0 31 167443.0 32 200621.0 33 245390.0 34 333563.0 35 368182.0 36 311929.0 37 356931.0 38 401449.0 39 359806.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.1460032572188 24.46447142185147 27.946769654840626 14.442755666089102 2 30.709681075315885 26.196065143219617 29.509806784417275 13.584446997047223 3 28.938680384031475 26.28676188909439 30.831024474243655 13.94353325263048 4 25.60380411700198 29.765272658357183 29.438105181047998 15.19281804359284 5 22.58577376582892 32.85780907077324 29.759808302293962 14.796608861103874 6 21.46566750867864 41.52786286721412 26.44895785478055 10.55751176932669 7 88.38373310350272 3.916468788552261 6.18524629645317 1.5145518114918588 8 86.49806767070115 5.9154690137762485 5.6823520670155565 1.9041112485070597 9 83.71682608226776 5.27929075549493 7.968910416074575 3.0349727461627354 10 43.89355318741093 29.020587901106143 14.127442082885318 12.958416828597608 11 38.430382513598005 24.073842243173097 21.780981091882424 15.714794151346473 12 33.80519541722671 21.60950439446984 26.106293579323804 18.479006608979642 13 24.14450301681605 30.646537405251966 27.318253059822556 17.890706518109425 14 20.582465662015412 32.66846479639202 28.631144111838307 18.11792542975426 15 19.21420825094636 22.850317987937363 39.58278340420131 18.35269035691497 16 22.434159569027106 19.898495972133517 36.850749932273786 20.816594526565588 17 21.8695672663677 20.776146726923 28.62310659339611 28.731179413313196 18 24.68110856461196 21.948785973316017 31.811717371939636 21.558388090132386 19 29.100789613907104 24.466177226125176 24.967076531920657 21.465956628047064 20 30.18961315539385 24.170639407721627 24.605330378147897 21.034417058736622 21 26.122021672966095 26.46610263332812 27.254126383905998 20.15774930979979 22 25.807459800120213 22.485767376290884 26.236455118988523 25.470317704600383 23 22.659846148019287 27.24741881455855 25.510794416179817 24.581940621242353 24 23.14799528966725 23.700531314663355 32.99193154578538 20.159541849884018 25 22.547783480817944 24.664715496422293 30.19770849770974 22.589792525050026 26 21.121904579621884 28.784637584534888 26.49009954090735 23.603358294935873 27 21.43406676170984 27.624575030668336 27.662305108247736 23.279053099374085 28 20.517037948940942 26.343082342063482 31.883447887245758 21.256431821749814 29 21.424699294172886 24.77680707556048 31.228216662585268 22.57027696768137 30 22.989297668339027 26.719139904573264 29.155172967107756 21.136389459979952 31 28.09890426650561 25.254085328955682 25.23474324320808 21.412267161330632 32 28.210562166591156 24.72317543271773 25.563963468033084 21.50229893265803 33 27.474579902329694 24.75133565920228 24.862097289245714 22.911987149222313 34 21.85274051912539 26.378730760190226 27.583404432604684 24.185124288079695 35 22.978368956212584 25.048752753500587 28.847289751672484 23.125588538614352 36 28.17144431604332 25.219304268934213 24.71652568724397 21.892725727778505 37 23.20032589535209 29.042040558243244 26.494262859812668 21.263370686592005 38 24.083816861383742 29.10833562942298 24.58723150568452 22.220616003508752 39 23.294492073647955 27.605232944920736 25.575557154706907 23.5247178267244 40 25.05294498434274 24.883925801561766 26.301333505262985 23.76179570883251 41 21.639052393922825 23.470276649650064 27.294805479043326 27.59586547738378 42 23.252656501036927 25.392602418367872 24.89505689724611 26.459684183349097 43 22.219112582792945 24.99714494623681 27.362228115759923 25.421514355210324 44 22.31949482750994 25.916457802016264 28.42413464404635 23.339912726427446 45 21.021493422968046 29.224041200666477 25.77051034483556 23.983955031529913 46 23.220766634699704 27.74427044919609 26.371849719221725 22.663113196882485 47 23.049116465666064 26.40021232926417 27.057004798514157 23.493666406555608 48 23.422311746428438 24.875194396635344 28.80114630047193 22.90134755646429 49 23.090055768234976 23.998121880582715 29.445044045890185 23.466778305292127 50 22.390271248900262 28.08028497917907 26.836753663648356 22.692690108272313 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2282.0 1 3298.0 2 4314.0 3 15248.0 4 26182.0 5 19387.0 6 12592.0 7 12986.5 8 13381.0 9 14363.0 10 15345.0 11 15461.0 12 15577.0 13 15709.0 14 15841.0 15 15355.5 16 14870.0 17 14911.0 18 14952.0 19 14089.0 20 13226.0 21 14080.0 22 14934.0 23 16338.0 24 17742.0 25 19215.0 26 20688.0 27 24939.0 28 29190.0 29 34872.5 30 40555.0 31 45367.5 32 50180.0 33 61178.5 34 72177.0 35 79658.0 36 87139.0 37 94289.5 38 101440.0 39 119012.0 40 136584.0 41 167745.5 42 198907.0 43 222312.0 44 245717.0 45 256339.5 46 266962.0 47 265662.0 48 264362.0 49 260834.5 50 257307.0 51 242510.0 52 227713.0 53 215209.0 54 202705.0 55 193380.5 56 184056.0 57 180515.5 58 176975.0 59 171222.5 60 165470.0 61 154739.0 62 144008.0 63 133820.5 64 123633.0 65 106440.5 66 89248.0 67 75720.0 68 62192.0 69 55032.5 70 47873.0 71 39956.5 72 32040.0 73 26888.5 74 21737.0 75 17051.5 76 12366.0 77 10028.5 78 7691.0 79 6221.0 80 4751.0 81 3355.0 82 1959.0 83 1472.0 84 985.0 85 796.0 86 607.0 87 387.0 88 167.0 89 134.0 90 101.0 91 69.0 92 37.0 93 25.0 94 13.0 95 9.5 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3458779.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.745179185458102 #Duplication Level Percentage of deduplicated Percentage of total 1 82.35156590298186 17.083979908604206 2 6.305256066590445 2.6160733382323107 3 1.9613381583741318 1.220649346162433 4 1.0085209699109574 0.8368779293237925 5 0.6646823919607251 0.6894477661322069 6 0.47996346338157453 0.5974156830194294 7 0.38971125022595704 0.5659240801568465 8 0.3090128383871471 0.5128421362358698 9 0.27277442808763563 0.5092878949099972 >10 3.5139518694675935 18.008449242849153 >50 1.6962139345999983 25.7024661136853 >100 1.0408604420309902 30.051626844234374 >500 0.004861433861305885 0.6590633536610729 >1k 0.0010008834420335646 0.3431021113370372 >5k 1.4298334886193777E-4 0.16966750902116826 >10k+ 1.4298334886193777E-4 0.4331267424348075 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14602 0.42217210177348713 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5720 0.16537627873882663 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 4275 0.12359853000148317 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018012136652847725 0.0 2 0.0 0.0 0.0 0.07820678915883322 0.0 3 0.0 0.0 0.0 0.12952547705418588 0.0 4 0.0 0.0 0.0 0.21906574545526036 0.0 5 0.0 0.0 0.0 0.3522919504252801 0.0 6 0.0 0.0 0.0 0.6724627390185959 0.0 7 0.0 0.0 0.0 0.8277198398625643 0.0 8 0.0 0.0 0.0 1.2634516400151614 0.0 9 0.0 0.0 0.0 1.4927522111126499 0.0 10 0.0 0.0 0.0 1.8079501465690637 0.0 11 0.0 0.0 0.0 2.0039152544872048 0.0 12 0.0 0.0 0.0 2.185453305920962 0.0 13 0.0 0.0 0.0 2.273605801353599 0.0 14 0.0 0.0 0.0 2.31700261855412 0.0 15 0.0 0.0 0.0 2.3575660659440802 0.0 16 0.0 0.0 0.0 2.43478984925027 0.0 17 0.0 0.0 0.0 2.519415088388128 0.0 18 0.0 0.0 0.0 2.658828447842432 0.0 19 0.0 0.0 0.0 2.713963511400989 0.0 20 0.0 0.0 0.0 2.785983146075537 0.0 21 0.0 0.0 0.0 2.8655487962659656 0.0 22 0.0 0.0 0.0 2.9476297849616873 0.0 23 0.0 0.0 0.0 3.0441089182049503 0.0 24 0.0 0.0 0.0 3.1206099030900787 0.0 25 0.0 0.0 0.0 3.1858352326066512 0.0 26 2.8911936842452205E-5 0.0 0.0 3.25160988892323 0.0 27 2.8911936842452205E-5 0.0 0.0 3.32094071347143 0.0 28 2.8911936842452205E-5 0.0 0.0 3.388710293430138 0.0 29 2.8911936842452205E-5 0.0 0.0 3.4695480688416347 0.0 30 2.8911936842452205E-5 0.0 0.0 3.5766378829060774 0.0 31 2.8911936842452205E-5 0.0 0.0 3.6627376308229 0.0 32 2.8911936842452205E-5 0.0 0.0 3.7529717857081937 0.0 33 2.8911936842452205E-5 0.0 0.0 3.8390137097513315 0.0 34 2.8911936842452205E-5 0.0 0.0 3.92731076486818 0.0 35 2.8911936842452205E-5 0.0 0.0 4.032290007543124 0.0 36 2.8911936842452205E-5 0.0 0.0 4.119690792617857 0.0 37 2.8911936842452205E-5 0.0 0.0 4.213770235103197 0.0 38 2.8911936842452205E-5 0.0 0.0 4.32334647573609 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 165 0.0 44.0 1 CGTTTTT 11560 0.0 40.99308 1 CGTTAGG 465 0.0 37.84946 2 CGTAAGG 585 0.0 37.60684 2 TACGAAT 540 0.0 37.48148 12 GGGCGAT 7380 0.0 37.44174 7 TAGGGAC 3070 0.0 37.335503 5 GGCGATA 1645 0.0 36.911854 8 GACCGAT 2610 0.0 36.750957 9 CGAATAT 545 0.0 36.733944 14 CGCATGG 350 0.0 36.45714 2 ATATGCG 145 0.0 36.41379 1 CATATGC 2885 0.0 36.298096 33 TATAGCG 285 0.0 36.280704 1 GGTACCT 2925 0.0 36.027348 8 TCACGAC 410 0.0 35.951218 25 AGGGCGA 4025 0.0 35.910557 6 CGGTCTA 415 0.0 35.518074 31 TATACTA 2275 0.0 35.49011 44 GGACCGA 2755 0.0 35.455536 8 >>END_MODULE