Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547165_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2578823 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30422 | 1.1796854611580554 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 29115 | 0.0 | 43.17637 | 1 |
GCGTAAG | 175 | 0.0 | 38.971424 | 1 |
GTTTTTT | 32100 | 0.0 | 38.53084 | 2 |
TATCGCG | 75 | 0.0 | 38.13333 | 1 |
CGTTAGG | 285 | 0.0 | 37.82456 | 2 |
TCGTTAG | 35 | 7.293729E-6 | 37.714287 | 1 |
CGTAAGG | 385 | 0.0 | 37.714283 | 2 |
AGGGCGA | 2635 | 0.0 | 36.73624 | 6 |
AAGGGAT | 5185 | 0.0 | 36.235294 | 5 |
TAACGGG | 770 | 0.0 | 35.999996 | 3 |
GCGCGAC | 300 | 0.0 | 35.933334 | 9 |
TCGATAG | 135 | 0.0 | 35.851852 | 1 |
AGGGATT | 6035 | 0.0 | 35.76139 | 6 |
GGGCGAT | 5260 | 0.0 | 35.760456 | 7 |
TAGGGAT | 5150 | 0.0 | 35.541744 | 5 |
TACGTAG | 155 | 0.0 | 35.483868 | 1 |
ACGGGAT | 1445 | 0.0 | 35.47405 | 5 |
ATAGGGA | 4020 | 0.0 | 35.24378 | 4 |
CGACGGA | 25 | 0.0023532852 | 35.2 | 3 |
GCGAACG | 100 | 0.0 | 35.2 | 1 |