##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547165_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2578823 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.603002610105463 31.0 30.0 31.0 27.0 34.0 2 30.95571623178481 31.0 31.0 33.0 28.0 34.0 3 31.035888465396813 31.0 31.0 34.0 28.0 34.0 4 34.88045127564009 35.0 35.0 37.0 32.0 37.0 5 34.69358540698605 35.0 35.0 37.0 32.0 37.0 6 34.73937257423251 35.0 35.0 37.0 32.0 37.0 7 35.45891904950437 35.0 35.0 37.0 35.0 37.0 8 34.43968857110395 37.0 35.0 37.0 33.0 37.0 9 36.54728261691477 39.0 37.0 39.0 32.0 39.0 10 35.95796376874256 38.0 35.0 39.0 30.0 39.0 11 35.679481298251176 37.0 35.0 39.0 30.0 39.0 12 35.52212268930438 37.0 35.0 39.0 30.0 39.0 13 35.46070668673267 37.0 35.0 39.0 30.0 39.0 14 36.41968293287287 38.0 35.0 40.0 30.0 41.0 15 36.543789938278046 38.0 35.0 40.0 30.0 41.0 16 36.555298676954564 38.0 35.0 40.0 30.0 41.0 17 36.47126576736752 38.0 35.0 40.0 30.0 41.0 18 36.287669607413925 38.0 35.0 40.0 30.0 41.0 19 36.16846871615462 37.0 34.0 40.0 30.0 41.0 20 35.9287993010765 37.0 34.0 40.0 30.0 41.0 21 35.76938006214463 37.0 34.0 40.0 29.0 41.0 22 35.736689567294846 37.0 34.0 40.0 29.0 41.0 23 35.605852747551886 37.0 34.0 40.0 29.0 41.0 24 35.47746200495342 37.0 34.0 40.0 29.0 41.0 25 35.304572279679526 37.0 34.0 40.0 27.0 41.0 26 35.15348436088867 37.0 34.0 40.0 27.0 41.0 27 34.9522444929334 37.0 33.0 40.0 27.0 41.0 28 34.964066165068324 37.0 33.0 40.0 27.0 41.0 29 34.82802735976839 36.0 33.0 40.0 26.0 41.0 30 34.74953302339866 37.0 33.0 40.0 25.0 41.0 31 34.59186962424331 37.0 33.0 40.0 25.0 41.0 32 34.145737028093826 37.0 33.0 40.0 23.0 41.0 33 33.75275619924283 37.0 32.0 40.0 21.0 41.0 34 33.43342563642406 37.0 32.0 40.0 18.0 41.0 35 33.08642237175642 37.0 31.0 40.0 17.0 41.0 36 32.96399326359351 37.0 31.0 40.0 15.0 41.0 37 32.9349431891991 37.0 31.0 40.0 15.0 41.0 38 32.92305869770822 37.0 31.0 40.0 15.0 41.0 39 32.81061747936946 37.0 31.0 40.0 15.0 41.0 40 32.752366098797786 36.0 31.0 40.0 15.0 41.0 41 32.76386048984362 36.0 31.0 40.0 15.0 41.0 42 32.612676403149806 36.0 31.0 40.0 14.0 41.0 43 32.670894435174496 36.0 31.0 40.0 14.0 41.0 44 32.38906198680561 36.0 30.0 40.0 12.0 41.0 45 32.3292083248831 36.0 30.0 40.0 12.0 41.0 46 32.27563698633059 36.0 30.0 40.0 12.0 41.0 47 32.22592399711031 36.0 30.0 40.0 11.0 41.0 48 32.21914338440443 36.0 30.0 40.0 11.0 41.0 49 32.230602875808074 36.0 30.0 40.0 11.0 41.0 50 31.69158565748793 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 3.0 13 8.0 14 50.0 15 153.0 16 509.0 17 1420.0 18 3229.0 19 5965.0 20 9607.0 21 14456.0 22 20800.0 23 28715.0 24 39668.0 25 55420.0 26 73961.0 27 84318.0 28 84768.0 29 86519.0 30 95318.0 31 109536.0 32 129754.0 33 155459.0 34 200881.0 35 229165.0 36 225115.0 37 264504.0 38 324682.0 39 334836.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.572522038154613 22.85484502038333 26.193771344524226 21.378861596937828 2 36.246458171033844 24.397370428292287 26.901807530024357 12.454363870649516 3 25.639332362089217 24.703789286818058 37.17909294278824 12.477785408304486 4 22.60888009762593 27.186123281822756 36.522747005125986 13.682249615425333 5 20.542898834080507 30.729832950923736 36.02263513238404 12.70463308261172 6 18.709892070917626 38.90185561397583 32.993966627411034 9.394285687695511 7 82.88164794559378 2.813647931633928 13.31669525205879 0.9880088707134999 8 81.3908127855227 4.921741430102027 12.555844274694309 1.1316015096809668 9 78.16930436869843 5.215441307914502 14.38714483312736 2.228109490259704 10 33.27242699479569 36.22831035708926 20.373635569405113 10.125627078709938 11 24.432231293113176 24.2517613655532 36.07599280757152 15.240014533762109 12 23.85309111947582 22.966174879004882 36.63520140777401 16.545532593745286 13 20.623051679002398 26.93655206270458 36.85022198111309 15.590174277179939 14 17.988322579719508 29.268468599822477 36.06695767797945 16.676251142478566 15 17.152398594242413 25.14286556308828 41.89612858269063 15.808607259978679 16 19.52685391746545 24.188088907226284 40.40277289290502 15.88228428240325 17 19.71531198535146 23.405987925499346 36.12504619355419 20.753653895595008 18 20.74582086478987 23.81268508928298 37.80573540719933 17.635758638727822 19 23.160449553924405 25.041928042366614 34.52268728796044 17.27493511574854 20 24.3517682291495 25.068063996637225 33.99841710733928 16.581750666873994 21 22.244372723525423 25.52075113336588 35.56479060408566 16.670085539023034 22 21.32391404916119 23.610848825219875 35.578866793106776 19.486370332512156 23 18.812729683270234 27.395404802888763 35.310488544580224 18.481376969260783 24 18.61163018943138 25.25376887052737 38.67601615155441 17.458584788486842 25 18.66646140506735 26.332788252625328 37.10153818234133 17.899212159965998 26 18.74238751554488 28.420950177658565 34.599931829365566 18.23673047743098 27 18.24801469507601 27.587430389755323 35.96536094179399 18.199193973374676 28 17.689504087717538 26.69283622800014 38.36723187283501 17.250427811447317 29 18.457955431605814 24.90104982001479 38.144494600831464 18.49650014754793 30 18.873416283319948 26.125368045810042 36.78561886566081 18.2155968052092 31 21.438346098200615 25.720881192699153 34.657748903278744 18.183023805821495 32 21.907397289383567 26.09826265703385 34.46409466644279 17.530245387139793 33 21.84969654761106 26.59589277744149 33.42059536462953 18.133815310317924 34 19.421495775398313 27.468267500328636 33.78611095061584 19.324125773657208 35 19.75110350729771 27.615156216615098 33.37468294644495 19.259057329642243 36 22.29412410235212 28.206278600741502 30.88447714325489 18.61512015365149 37 20.613085892284968 30.09291448075343 30.936206168472978 18.35779345848862 38 20.694906164556468 30.471149047453043 29.9338496670768 18.900095120913686 39 20.801776624452316 29.704481463055043 30.43714128499707 19.05660062749557 40 21.915113988048034 28.06982099973515 30.28168276768122 19.733382244535587 41 19.691541451274478 27.80229585357351 30.608847524626544 21.89731517052547 42 20.42990154810935 28.528906404200676 29.668224612546112 21.37296743514386 43 20.431840417120522 28.43498758929946 30.396076039340425 20.73709595423959 44 20.017659218953764 29.50776381318144 30.97579787368113 19.498779094183664 45 19.604757674334376 30.33116270484636 29.67314933983449 20.390930280984776 46 20.59400742121503 30.099622967532085 29.816625646661286 19.4897439645916 47 20.5318085033366 28.55046662760492 30.436753511194837 20.480971357863645 48 20.8701799231665 27.410450426415462 31.54330483325145 20.17606481716659 49 20.627588632488543 27.10759908687025 31.788028879841697 20.476783400799512 50 19.709766819979503 29.340400640136995 30.69144334450251 20.258389195380992 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1429.0 1 2114.0 2 2799.0 3 30147.5 4 57496.0 5 43860.5 6 30225.0 7 30329.0 8 30433.0 9 31076.0 10 31719.0 11 31420.5 12 31122.0 13 30527.0 14 29932.0 15 28426.0 16 26920.0 17 25374.0 18 23828.0 19 23245.5 20 22663.0 21 22467.0 22 22271.0 23 24104.5 24 25938.0 25 28805.0 26 31672.0 27 36801.5 28 41931.0 29 48185.0 30 54439.0 31 62228.0 32 70017.0 33 78065.0 34 86113.0 35 95585.5 36 105058.0 37 113518.0 38 121978.0 39 134321.5 40 146665.0 41 157728.5 42 168792.0 43 182176.0 44 195560.0 45 195287.5 46 195015.0 47 193628.5 48 192242.0 49 186349.0 50 180456.0 51 167560.5 52 154665.0 53 139458.5 54 124252.0 55 112700.0 56 101148.0 57 91050.0 58 80952.0 59 72547.0 60 64142.0 61 57654.5 62 51167.0 63 41365.0 64 31563.0 65 24308.5 66 17054.0 67 13869.5 68 10685.0 69 8561.5 70 6438.0 71 5310.5 72 4183.0 73 3312.5 74 2442.0 75 2054.5 76 1667.0 77 1394.0 78 1121.0 79 749.5 80 378.0 81 272.5 82 167.0 83 105.0 84 43.0 85 34.0 86 25.0 87 15.5 88 6.0 89 5.0 90 4.0 91 4.0 92 4.0 93 4.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2578823.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.65190341306649 #Duplication Level Percentage of deduplicated Percentage of total 1 78.54642963423116 22.505047153212146 2 5.554803816496405 3.1831140485757623 3 2.3294390724895546 2.0022858993478176 4 1.4262037052142347 1.6345380323662322 5 1.1549447822651815 1.6545683174443544 6 0.8991274411695677 1.5457027560256842 7 0.7259611998549724 1.456011912591497 8 0.651440026553171 1.493199737616554 9 0.5711674705464606 1.4728531678904417 >10 7.49569364112007 49.099137613851966 >50 0.6052099759249837 10.81860134237256 >100 0.03833425230331888 1.6436899006437873 >500 8.299878872573949E-4 0.1448246626284582 >1k 2.766626290857981E-4 0.1406630343920082 >5k 0.0 0.0 >10k+ 1.3833131454289905E-4 1.2057624210407645 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30422 1.1796854611580554 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013688415218880862 0.0 2 0.0 0.0 0.0 0.051651470457646766 0.0 3 0.0 0.0 0.0 0.10047219215898105 0.0 4 0.0 0.0 0.0 0.14669482938534362 0.0 5 0.0 0.0 0.0 0.2345255955914772 0.0 6 0.0 0.0 0.0 0.47603111962317696 0.0 7 0.0 0.0 0.0 0.6254015882439392 0.0 8 0.0 0.0 0.0 0.9662159830279162 0.0 9 0.0 0.0 0.0 1.1743341826872182 0.0 10 0.0 0.0 0.0 1.4182051269125489 0.0 11 0.0 0.0 0.0 1.5452786019048226 0.0 12 0.0 0.0 0.0 1.6830934112189941 0.0 13 0.0 0.0 0.0 1.7657280084751843 0.0 14 0.0 0.0 0.0 1.8105934373937258 0.0 15 0.0 0.0 0.0 1.8460359629179668 0.0 16 0.0 0.0 0.0 1.8987732000218704 0.0 17 0.0 0.0 0.0 1.9582964786648793 0.0 18 0.0 0.0 0.0 2.059893214850341 0.0 19 0.0 0.0 0.0 2.1113507984068702 0.0 20 0.0 0.0 0.0 2.1704863032476442 0.0 21 0.0 0.0 0.0 2.228574818822385 0.0 22 0.0 0.0 0.0 2.297210781817907 0.0 23 0.0 0.0 0.0 2.3733695565767796 0.0 24 0.0 0.0 0.0 2.4352970327936427 0.0 25 0.0 0.0 0.0 2.489391478205367 0.0 26 0.0 0.0 0.0 2.5433695914764214 0.0 27 0.0 0.0 0.0 2.6072359367044577 0.0 28 0.0 0.0 0.0 2.667728649853053 0.0 29 0.0 0.0 0.0 2.738768810422429 0.0 30 0.0 0.0 0.0 2.838310345456047 0.0 31 0.0 0.0 0.0 2.9198591760659807 0.0 32 0.0 0.0 0.0 3.00427753281245 0.0 33 0.0 0.0 0.0 3.0888897764600363 0.0 34 0.0 0.0 0.0 3.1748204510352203 0.0 35 0.0 0.0 0.0 3.266063626701018 0.0 36 0.0 0.0 0.0 3.3585089011537432 0.0 37 0.0 0.0 0.0 3.455219687431049 0.0 38 0.0 0.0 0.0 3.555187773647125 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 29115 0.0 43.17637 1 GCGTAAG 175 0.0 38.971424 1 GTTTTTT 32100 0.0 38.53084 2 TATCGCG 75 0.0 38.13333 1 CGTTAGG 285 0.0 37.82456 2 TCGTTAG 35 7.293729E-6 37.714287 1 CGTAAGG 385 0.0 37.714283 2 AGGGCGA 2635 0.0 36.73624 6 AAGGGAT 5185 0.0 36.235294 5 TAACGGG 770 0.0 35.999996 3 GCGCGAC 300 0.0 35.933334 9 TCGATAG 135 0.0 35.851852 1 AGGGATT 6035 0.0 35.76139 6 GGGCGAT 5260 0.0 35.760456 7 TAGGGAT 5150 0.0 35.541744 5 TACGTAG 155 0.0 35.483868 1 ACGGGAT 1445 0.0 35.47405 5 ATAGGGA 4020 0.0 35.24378 4 CGACGGA 25 0.0023532852 35.2 3 GCGAACG 100 0.0 35.2 1 >>END_MODULE