##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547162_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4792287 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60626857281294 31.0 31.0 33.0 30.0 34.0 2 31.99495355766464 31.0 31.0 34.0 30.0 34.0 3 32.12275120417454 33.0 31.0 34.0 30.0 34.0 4 35.79629099843144 37.0 35.0 37.0 35.0 37.0 5 35.70113246556394 37.0 35.0 37.0 33.0 37.0 6 35.76155601699147 37.0 35.0 37.0 35.0 37.0 7 36.107102308355074 37.0 35.0 37.0 35.0 37.0 8 22.062669660644282 35.0 0.0 37.0 0.0 37.0 9 30.001298336264085 37.0 18.0 39.0 17.0 39.0 10 34.46067962957978 37.0 32.0 39.0 27.0 39.0 11 36.082638205933826 37.0 35.0 39.0 32.0 39.0 12 36.709555792464016 38.0 35.0 39.0 33.0 39.0 13 36.913290042937746 39.0 37.0 39.0 33.0 39.0 14 38.09038252508667 40.0 37.0 41.0 33.0 41.0 15 38.27153298623392 40.0 37.0 41.0 33.0 41.0 16 38.28737677856105 40.0 37.0 41.0 33.0 41.0 17 38.22249189165841 40.0 37.0 41.0 33.0 41.0 18 38.15851304398088 40.0 37.0 41.0 33.0 41.0 19 38.18998236124005 40.0 37.0 41.0 34.0 41.0 20 38.10942103425776 40.0 37.0 41.0 34.0 41.0 21 38.03130342569216 40.0 36.0 41.0 33.0 41.0 22 37.996090384403104 40.0 36.0 41.0 33.0 41.0 23 37.866489214857125 40.0 36.0 41.0 33.0 41.0 24 37.78050375530514 40.0 36.0 41.0 33.0 41.0 25 37.65277956015573 40.0 36.0 41.0 33.0 41.0 26 37.60886670602157 40.0 36.0 41.0 33.0 41.0 27 37.506454433968585 40.0 35.0 41.0 33.0 41.0 28 37.51212124816398 40.0 36.0 41.0 33.0 41.0 29 37.42901207711475 39.0 36.0 41.0 33.0 41.0 30 37.32574468098426 39.0 36.0 41.0 32.0 41.0 31 37.26492298979589 39.0 35.0 41.0 32.0 41.0 32 37.0894850412757 39.0 35.0 41.0 31.0 41.0 33 36.98244679419242 40.0 35.0 41.0 31.0 41.0 34 36.90591569327964 40.0 35.0 41.0 31.0 41.0 35 36.74354624420449 40.0 35.0 41.0 30.0 41.0 36 36.65835643816825 40.0 35.0 41.0 30.0 41.0 37 36.63701130587546 40.0 35.0 41.0 30.0 41.0 38 36.54427374654314 39.0 35.0 41.0 30.0 41.0 39 36.44587292038227 39.0 35.0 41.0 30.0 41.0 40 36.404910640785914 39.0 35.0 41.0 30.0 41.0 41 36.3872837749492 39.0 35.0 41.0 30.0 41.0 42 36.167608283894516 39.0 35.0 41.0 29.0 41.0 43 36.22284662834259 39.0 35.0 41.0 30.0 41.0 44 36.04342769955138 39.0 35.0 41.0 29.0 41.0 45 35.851667272849056 39.0 35.0 40.0 28.0 41.0 46 35.915967887566 39.0 35.0 40.0 29.0 41.0 47 35.795203834828754 39.0 35.0 40.0 28.0 41.0 48 35.804690537106815 38.0 35.0 40.0 28.0 41.0 49 35.71307957974971 38.0 35.0 40.0 28.0 41.0 50 35.281004038364145 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 7.0 13 17.0 14 24.0 15 63.0 16 170.0 17 400.0 18 1029.0 19 2306.0 20 4419.0 21 7481.0 22 11992.0 23 18517.0 24 27506.0 25 40079.0 26 53977.0 27 63283.0 28 69254.0 29 78984.0 30 96087.0 31 123258.0 32 159484.0 33 211923.0 34 311956.0 35 453710.0 36 465247.0 37 720164.0 38 887788.0 39 983157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.00875198000454 23.33126125376047 28.227316101894566 14.432670664340428 2 31.86731095195259 25.444636350034962 29.6057393891476 13.08231330886485 3 29.167389181824877 25.745119188395854 31.693343908659894 13.394147721119372 4 25.115106837299184 28.55517626552834 31.355968455144694 14.973748442027784 5 22.941843841990263 33.13513986119779 29.861462804710985 14.061553492100954 6 21.128868116621565 41.45432024417569 26.672087877875427 10.744723761327316 7 89.38757215500658 2.8315082130932474 6.337892534399546 1.4430270975006296 8 55.11890251981987 39.96862041025506 3.635967545349433 1.276509524575636 9 84.61880517590036 5.635075695591688 7.480728929632136 2.2653901988758185 10 32.530251214086306 45.279404175918515 12.735318231149344 9.455026378845842 11 25.08399434341057 22.845418064485703 35.60581826589267 16.464769326211055 12 25.272046519751424 23.539575154826913 33.68122568619116 17.507152639230497 13 21.411092449179275 28.172937054896753 33.864040279724485 16.55193021619949 14 17.93252365728513 31.888010880817447 32.23661270704363 17.94285275485379 15 17.283668528199584 28.414387535637996 37.88329037889425 16.41865355726817 16 21.096253208541142 26.88868592386057 35.78306140679805 16.23199946080024 17 21.03717911719394 25.509177559691228 31.147383284849173 22.306260038265656 18 21.975207244474298 26.339678737938694 33.23513387240789 18.44998014517912 19 24.02126583821044 28.10958525647567 29.660598374012242 18.20855053130165 20 25.392615258643737 27.718394161284582 29.295156988719583 17.593833591352105 21 23.554912299701584 27.144492806879057 31.260481686510012 18.040113206909353 22 22.75813197331462 24.604265145221895 31.90299328900794 20.734609592455545 23 19.877106692483153 28.936226064924742 30.826221384487194 20.36044585810491 24 20.02221486317493 27.67171498701977 33.94408556916562 18.36198458063968 25 20.307214488614726 28.96969651441994 31.387206150215963 19.33588284674937 26 19.55849054950173 31.188198870393197 29.361638816706932 19.891671763398143 27 19.320524835010925 29.22429311933947 31.670912030101704 19.7842700155479 28 18.14505266483414 29.032860511067053 34.31626695145763 18.505819872641183 29 19.473708481983653 26.581922159503385 33.64072310360377 20.30364625490919 30 20.708526012736716 27.318522450763073 32.70916370409368 19.263787832406532 31 23.23297832537993 27.175897436860524 29.644572622632992 19.946551615126555 32 23.04442534430847 27.872996754994013 30.126889311929773 18.955688588767742 33 22.07472131781757 28.138715398305653 29.581053889301707 20.205509394575074 34 20.228922015730692 28.570179540582608 31.378066463882487 19.822831979804214 35 19.846870606873086 28.264813856098353 31.46349540417759 20.424820132850975 36 23.079711210952098 28.19340744826009 29.99019048733934 18.73669085344847 37 21.146145879827312 29.222164699234416 30.177992261314902 19.45369715962337 38 21.035906238503664 29.763847615971244 28.974641961134633 20.22560418439046 39 21.070086161367215 29.076305321446732 29.430499467164633 20.42310905002142 40 22.029523690880783 27.89042058624619 29.528365058269674 20.55169066460335 41 20.10511891295325 27.261034241062777 29.938816268725144 22.69503057725883 42 21.917447765544924 28.571014215133612 28.295926349986967 21.215611669334493 43 21.681840006660703 27.680458202941516 29.134398670196504 21.503303120201274 44 20.881449712840656 29.395589204068955 29.080520427929297 20.642440655161096 45 20.151902421536942 29.341585760619093 28.441890062093528 22.064621755750437 46 21.77494795282503 29.159939711457184 28.712929755667805 20.352182580049984 47 21.136505388763236 28.56467068854599 29.60081480929669 20.698009113394086 48 21.38753375997723 26.77859235058334 30.57880298070629 21.25507090873314 49 21.046047534298342 26.600055464123912 30.668447027483953 21.68544997409379 50 20.219865796852318 28.59451030374433 30.268387515188465 20.917236384214885 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3144.0 1 4211.5 2 5279.0 3 26174.5 4 47070.0 5 33889.0 6 20708.0 7 21012.5 8 21317.0 9 22493.0 10 23669.0 11 24136.0 12 24603.0 13 24732.0 14 24861.0 15 24535.5 16 24210.0 17 24294.0 18 24378.0 19 25949.0 20 27520.0 21 30960.5 22 34401.0 23 41964.5 24 49528.0 25 61097.5 26 72667.0 27 87011.5 28 101356.0 29 115402.5 30 129449.0 31 144475.0 32 159501.0 33 175477.0 34 191453.0 35 211505.5 36 231558.0 37 246893.5 38 262229.0 39 283646.5 40 305064.0 41 331419.0 42 357774.0 43 375672.5 44 393571.0 45 400700.5 46 407830.0 47 387958.5 48 368087.0 49 342772.5 50 317458.0 51 293295.5 52 269133.0 53 241119.5 54 213106.0 55 195563.5 56 178021.0 57 162447.0 58 146873.0 59 131265.0 60 115657.0 61 103036.5 62 90416.0 63 74797.5 64 59179.0 65 47242.5 66 35306.0 67 28362.5 68 21419.0 69 17513.5 70 13608.0 71 11252.0 72 8896.0 73 7327.5 74 5759.0 75 4712.5 76 3666.0 77 2623.5 78 1581.0 79 1093.0 80 605.0 81 418.5 82 232.0 83 149.5 84 67.0 85 53.5 86 40.0 87 32.5 88 25.0 89 16.0 90 7.0 91 6.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4792287.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.604673870934086 #Duplication Level Percentage of deduplicated Percentage of total 1 79.09478589429395 18.67006625926166 2 7.1822788106740125 3.3907069795216085 3 2.4738062950594815 1.7518017244422839 4 1.3027440325626436 1.2300339210378695 5 0.8654112786889714 1.0213875498840608 6 0.6239922509831636 0.8837480149468575 7 0.48351055965771333 0.7989176351711199 8 0.3996864527677963 0.7547574694571466 9 0.3505045616713243 0.7446191281673682 >10 5.06498879752347 29.935736788210775 >50 1.8533979097214552 30.39370968900593 >100 0.30149251133534777 9.063066516797301 >500 0.0023379434792587424 0.37607018599994785 >1k 8.501612651764642E-4 0.3166695589665763 >5k 0.0 0.0 >10k+ 2.1254031629411606E-4 0.6687085791295144 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16334 0.34083935290186085 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10324 0.21542950161373892 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02877540514581034 0.0 2 0.0 0.0 0.0 0.09799079228769061 0.0 3 0.0 0.0 0.0 0.16276153744548272 0.0 4 0.0 0.0 0.0 0.24950509015841496 0.0 5 0.0 0.0 0.0 0.41525058912373153 0.0 6 2.0866863775061886E-5 0.0 0.0 0.7285039481149606 0.0 7 2.0866863775061886E-5 0.0 0.0 0.8737581868531663 0.0 8 4.173372755012377E-5 0.0 0.0 1.22903740948737 0.0 9 4.173372755012377E-5 0.0 0.0 1.5178974047255518 0.0 10 4.173372755012377E-5 0.0 0.0 1.9450003724735183 0.0 11 4.173372755012377E-5 0.0 0.0 2.3168478849451213 0.0 12 4.173372755012377E-5 0.0 0.0 2.637821983533123 0.0 13 4.173372755012377E-5 0.0 0.0 2.8150233907109485 0.0 14 4.173372755012377E-5 0.0 0.0 2.9113657007604092 0.0 15 4.173372755012377E-5 0.0 0.0 2.9979631854269164 0.0 16 6.260059132518565E-5 0.0 0.0 3.151209432990971 0.0 17 6.260059132518565E-5 0.0 0.0 3.351614792686665 0.0 18 6.260059132518565E-5 0.0 0.0 3.5959657674926397 0.0 19 6.260059132518565E-5 0.0 0.0 3.7398845269492416 0.0 20 6.260059132518565E-5 0.0 0.0 3.890188546721012 0.0 21 6.260059132518565E-5 0.0 0.0 4.063717385874427 0.0 22 6.260059132518565E-5 0.0 0.0 4.264435748526747 0.0 23 8.346745510024755E-5 0.0 0.0 4.4699743567111065 0.0 24 8.346745510024755E-5 0.0 0.0 4.632506358655064 0.0 25 8.346745510024755E-5 0.0 0.0 4.771145801576575 0.0 26 8.346745510024755E-5 0.0 0.0 4.910035646863387 0.0 27 8.346745510024755E-5 0.0 0.0 5.055582021694444 0.0 28 8.346745510024755E-5 0.0 0.0 5.214065852066039 0.0 29 8.346745510024755E-5 0.0 0.0 5.3809590285389834 0.0 30 8.346745510024755E-5 0.0 0.0 5.5802584444546 0.0 31 8.346745510024755E-5 0.0 0.0 5.757084248084474 0.0 32 8.346745510024755E-5 0.0 0.0 5.941672525038672 0.0 33 8.346745510024755E-5 0.0 0.0 6.1197086067674995 0.0 34 8.346745510024755E-5 0.0 0.0 6.296158806849423 0.0 35 8.346745510024755E-5 0.0 0.0 6.495312154718613 0.0 36 8.346745510024755E-5 0.0 0.0 6.684365940520674 0.0 37 8.346745510024755E-5 0.0 0.0 6.87513080915229 0.0 38 8.346745510024755E-5 0.0 0.0 7.083152574125882 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 19280 0.0 41.1473 1 ACGAGAT 1635 0.0 40.50153 5 GAGCGAT 2860 0.0 40.46154 7 TCGCCTA 35 7.295039E-6 37.714287 23 CGCGAAC 35 7.295039E-6 37.714287 26 TCGACCC 35 7.295039E-6 37.714287 44 GGGCGAT 5185 0.0 37.296047 7 AGCGATC 410 0.0 37.02439 8 ACGGGAT 2590 0.0 36.864864 5 GCGCGAC 485 0.0 36.742268 9 GCGATAT 420 0.0 36.666668 9 CTCGACC 30 1.301711E-4 36.666664 41 TACGGGA 1510 0.0 36.569534 4 CGAGATT 1995 0.0 36.170425 6 ACGTTGA 195 0.0 36.102566 2 GCGAACG 195 0.0 36.102566 1 GGCGATA 1305 0.0 35.908047 8 GACCGAT 2580 0.0 35.899223 9 AAGGGAT 8750 0.0 35.778286 5 AGAGATT 8190 0.0 35.726498 6 >>END_MODULE