##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547160_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 393297 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.486530535447766 31.0 31.0 33.0 30.0 34.0 2 31.885061416690185 31.0 31.0 34.0 30.0 34.0 3 32.04060036054178 33.0 31.0 34.0 30.0 34.0 4 35.73553065495033 37.0 35.0 37.0 35.0 37.0 5 35.63729446194606 37.0 35.0 37.0 33.0 37.0 6 35.68972049113011 37.0 35.0 37.0 33.0 37.0 7 35.98795820969903 37.0 35.0 37.0 35.0 37.0 8 22.06831224240205 35.0 0.0 37.0 0.0 37.0 9 29.957146888992288 37.0 18.0 39.0 17.0 39.0 10 34.34672270574146 35.0 32.0 39.0 27.0 39.0 11 35.961166751844026 37.0 35.0 39.0 32.0 39.0 12 36.42669788988983 37.0 35.0 39.0 32.0 39.0 13 36.572976656318254 39.0 35.0 39.0 33.0 39.0 14 37.66548689667096 39.0 36.0 41.0 33.0 41.0 15 37.889104163011666 40.0 36.0 41.0 33.0 41.0 16 37.94289557255713 40.0 36.0 41.0 33.0 41.0 17 37.88384859279374 40.0 36.0 41.0 33.0 41.0 18 37.85101844153401 40.0 36.0 41.0 33.0 41.0 19 37.88583945466149 40.0 36.0 41.0 33.0 41.0 20 37.81040282534573 40.0 36.0 41.0 33.0 41.0 21 37.69469383188786 40.0 36.0 41.0 33.0 41.0 22 37.66071187931767 40.0 36.0 41.0 33.0 41.0 23 37.52736735851023 39.0 35.0 41.0 32.0 41.0 24 37.45644131534184 39.0 35.0 41.0 32.0 41.0 25 37.28891143334427 39.0 35.0 41.0 32.0 41.0 26 37.23092217840462 39.0 35.0 41.0 32.0 41.0 27 37.14055535638462 39.0 35.0 41.0 32.0 41.0 28 37.164753354335275 39.0 35.0 41.0 32.0 41.0 29 37.06750877835326 39.0 35.0 41.0 32.0 41.0 30 36.98178221547584 39.0 35.0 41.0 31.0 41.0 31 36.94730445439452 39.0 35.0 41.0 31.0 41.0 32 36.8115292005787 39.0 35.0 41.0 31.0 41.0 33 36.75264749031902 39.0 35.0 41.0 31.0 41.0 34 36.690465475200675 39.0 35.0 41.0 31.0 41.0 35 36.56641418571716 39.0 35.0 41.0 30.0 41.0 36 36.452042603935446 39.0 35.0 41.0 30.0 41.0 37 36.43686323567177 39.0 35.0 41.0 30.0 41.0 38 36.32506731554017 39.0 35.0 41.0 30.0 41.0 39 36.210708446797206 39.0 35.0 41.0 30.0 41.0 40 36.1394315237594 39.0 35.0 40.0 30.0 41.0 41 36.11530471882572 39.0 35.0 40.0 30.0 41.0 42 35.86565623434707 38.0 35.0 40.0 29.0 41.0 43 35.90968148752724 38.0 35.0 40.0 29.0 41.0 44 35.72457455815834 38.0 35.0 40.0 29.0 41.0 45 35.51404409390359 38.0 34.0 40.0 28.0 41.0 46 35.568672021398584 38.0 34.0 40.0 28.0 41.0 47 35.436080112484966 38.0 34.0 40.0 28.0 41.0 48 35.429698167034076 38.0 34.0 40.0 28.0 41.0 49 35.331029730712416 38.0 34.0 40.0 27.0 41.0 50 34.892793486855986 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 1.0 15 5.0 16 18.0 17 51.0 18 120.0 19 235.0 20 416.0 21 724.0 22 1060.0 23 1591.0 24 2298.0 25 3138.0 26 4086.0 27 5239.0 28 5977.0 29 7010.0 30 9099.0 31 11528.0 32 14644.0 33 19718.0 34 29387.0 35 42478.0 36 40464.0 37 60546.0 38 67820.0 39 65642.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.31759967658029 23.570990879666002 26.760692301238 12.350717142515707 2 32.80091127061737 24.758388698617075 28.090984675703094 14.34971535506246 3 30.96794534410382 25.8486589015426 28.790201806777066 14.393193947576513 4 26.509482655601236 28.85783517291004 28.669173677907533 15.963508493581186 5 24.007048108681225 32.43299592928499 27.754851931237717 15.805104030796066 6 21.996099639712483 41.3000861944027 25.73729268212064 10.96652148376418 7 88.4024032728447 4.071986310599877 5.614332171361592 1.9112782451938357 8 54.43850321767011 40.282534573108876 3.4073486449172 1.8716135643038212 9 83.76900917118616 5.009700048563808 7.606719603760008 3.6145711764900312 10 43.16712306475768 27.933597256017716 14.77433084920556 14.124948830019044 11 34.894240230665375 26.886551384831307 22.1827270485155 16.036481335987816 12 31.755645224855517 24.118160067328255 26.18733425375734 17.93886045405889 13 24.328433728200316 30.523751770290648 27.469317080984602 17.67849742052444 14 20.40849536101216 33.096616551867925 28.611202221222133 17.88368586589778 15 19.599437575165844 25.909427226752303 36.54540970309969 17.945725494982163 16 22.193914522612683 24.012641845729817 34.799146700839316 18.994296930818187 17 22.623869493029442 23.74668507514677 27.216073349148353 26.413372082675433 18 24.7606770455915 25.02815938082416 29.615278021444354 20.595885552139986 19 28.073949203782384 27.072670272084455 25.13749151404664 19.715889010086524 20 30.535956287487576 25.714917733926267 24.31546642867858 19.433659549907574 21 26.64373234476744 27.175900146708464 26.20945494117677 19.970912567347323 22 25.576091350811218 24.51709522320282 26.460664586813525 23.44614883917243 23 22.801343513934764 29.493995631799883 25.84281090371907 21.86184995054628 24 23.1046766184334 26.500075006928608 30.753857771607716 19.641390603030278 25 22.790918822162386 26.31522742355014 29.142098719288477 21.751755034998997 26 21.840746306226592 30.550194890883986 26.377521313409456 21.23153748947996 27 21.819642661906904 28.718500268245116 27.873845973907756 21.588011095940217 28 20.376204242595293 28.544585898188902 31.171099703277676 19.908110155938132 29 21.220350015382778 26.281410740483658 31.03837557876109 21.45986366537248 30 22.586238898338916 27.125810774046077 29.172101490730924 21.115848836884084 31 26.2859874344325 26.470326496261094 25.95188877616661 21.29179729313979 32 26.177418083534835 27.319048962997428 25.523459370399472 20.98007358306827 33 24.739319140496878 27.05716036481336 26.3014973417036 21.902023152986168 34 21.832101439878766 27.93791968919163 27.88783031652924 22.342148554400364 35 21.58775683516528 27.363290337836293 28.481020704454902 22.567932122543525 36 26.263866747013072 27.130387467994925 26.370656272486187 20.235089512505816 37 23.365548173517723 28.840291179439458 26.78128742400781 21.012873223035008 38 22.945763634098405 29.530863444165607 25.45887713356573 22.064495788170262 39 23.00373509078381 27.818417124971713 26.28853004218186 22.889317742062616 40 24.757625916292266 26.24632275354249 26.74823352326613 22.24781780689911 41 21.721498002781615 25.900273838854602 27.313455225948836 25.064772932414943 42 23.56666844649209 26.987238651705965 26.036049092670428 23.410043809131523 43 23.39580520573511 26.836716272943857 26.603559142327555 23.163919378993484 44 22.68870599063812 28.421015161570008 26.923164936422094 21.96711391136978 45 21.84481447862557 29.156337322684895 25.250637558893153 23.748210639796387 46 23.370124867466572 28.0945443265522 26.887314167156116 21.648016638825112 47 22.578102553540962 27.655944489787615 27.447959175889974 22.317993780781446 48 23.404958593632802 26.25242501214095 27.713915946473023 22.628700447753225 49 22.524199269254535 25.590329954207636 28.58959005535257 23.29588072118526 50 20.915745607009463 28.82096736054432 27.758157321311884 22.505129711134334 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 220.0 1 413.5 2 607.0 3 1325.0 4 2043.0 5 1547.0 6 1051.0 7 1107.0 8 1163.0 9 1263.0 10 1363.0 11 1395.5 12 1428.0 13 1439.5 14 1451.0 15 1402.5 16 1354.0 17 1381.0 18 1408.0 19 1518.5 20 1629.0 21 1711.0 22 1793.0 23 2054.0 24 2315.0 25 2648.0 26 2981.0 27 3539.5 28 4098.0 29 4928.5 30 5759.0 31 6793.5 32 7828.0 33 8842.5 34 9857.0 35 10921.0 36 11985.0 37 13453.5 38 14922.0 39 17455.0 40 19988.0 41 22930.5 42 25873.0 43 27454.0 44 29035.0 45 29564.5 46 30094.0 47 30537.0 48 30980.0 49 32137.5 50 33295.0 51 31925.0 52 30555.0 53 27958.5 54 25362.0 55 23237.5 56 21113.0 57 19602.0 58 18091.0 59 16737.0 60 15383.0 61 13832.0 62 12281.0 63 10482.5 64 8684.0 65 7279.5 66 5875.0 67 5074.0 68 4273.0 69 3532.0 70 2791.0 71 2305.5 72 1820.0 73 1489.0 74 1158.0 75 906.5 76 655.0 77 548.5 78 442.0 79 308.5 80 175.0 81 125.0 82 75.0 83 48.5 84 22.0 85 19.0 86 16.0 87 10.0 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 393297.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.08035203335818 #Duplication Level Percentage of deduplicated Percentage of total 1 63.87055423494795 24.322131898325143 2 8.633225252406165 6.575125135898086 3 5.713571366613823 6.527244270251092 4 4.502499810274588 6.858271112215389 5 3.7509665376213612 7.1419063108984036 6 2.9830394856628013 6.8157116246068306 7 2.4606869908130964 6.559267879784726 8 1.8671061049103426 5.688004620689442 9 1.5241568934405338 5.223638795065661 >10 4.668638956613671 23.208792035751763 >50 0.019502016688802432 0.5062781094965638 >100 0.005379866672773085 0.4064053413105953 >500 6.724833340966356E-4 0.16722286570624997 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 653 0.16603228603320136 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.028731467567766854 0.0 2 0.0 0.0 0.0 0.09992448454984401 0.0 3 0.0 0.0 0.0 0.14670846713806615 0.0 4 0.0 0.0 0.0 0.24688721246284615 0.0 5 0.0 0.0 0.0 0.4106311515216236 0.0 6 0.0 0.0 0.0 0.7236261654678271 0.0 7 0.0 0.0 0.0 0.8634695916826215 0.0 8 0.0 0.0 0.0 1.2135866787694796 0.0 9 0.0 0.0 0.0 1.4439469408614864 0.0 10 0.0 0.0 0.0 1.804234458945784 0.0 11 0.0 0.0 0.0 2.16019954385617 0.0 12 0.0 0.0 0.0 2.4426832648100545 0.0 13 0.0 0.0 0.0 2.583289473349657 0.0 14 0.0 0.0 0.0 2.6460918847588464 0.0 15 0.0 0.0 0.0 2.7226243780145793 0.0 16 0.0 0.0 0.0 2.8614507611296296 0.0 17 0.0 0.0 0.0 3.0157870515157756 0.0 18 0.0 0.0 0.0 3.2138561951909117 0.0 19 0.0 0.0 0.0 3.327765022362235 0.0 20 0.0 0.0 0.0 3.437097155584711 0.0 21 0.0 0.0 0.0 3.587365273571881 0.0 22 0.0 0.0 0.0 3.7437356501575145 0.0 23 0.0 0.0 0.0 3.912310543940076 0.0 24 0.0 0.0 0.0 4.059019011078142 0.0 25 0.0 0.0 0.0 4.182844008471969 0.0 26 0.0 0.0 0.0 4.297261357193165 0.0 27 0.0 0.0 0.0 4.398457145617688 0.0 28 0.0 0.0 0.0 4.519993796037092 0.0 29 0.0 0.0 0.0 4.648141226604831 0.0 30 0.0 0.0 0.0 4.814427773412968 0.0 31 0.0 0.0 0.0 4.956051025052314 0.0 32 0.0 0.0 0.0 5.115726791712116 0.0 33 0.0 0.0 0.0 5.273114211397494 0.0 34 0.0 0.0 0.0 5.428467544883383 0.0 35 0.0 0.0 0.0 5.601619132614792 0.0 36 0.0 0.0 0.0 5.747056295878179 0.0 37 0.0 0.0 0.0 5.903172411688876 0.0 38 0.0 0.0 0.0 6.071238783921566 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGAC 20 7.850157E-4 44.000004 5 TCGTAAG 20 7.850157E-4 44.000004 1 CGTAAGA 20 7.850157E-4 44.000004 2 AATCGAG 20 7.850157E-4 44.000004 1 CGAAAGG 50 2.7284841E-11 44.0 2 AGTAGCG 30 2.523453E-6 44.0 1 GCGTATG 25 4.4374832E-5 44.0 1 TAGGGCG 120 0.0 42.166664 5 GAGCGAT 350 0.0 42.114285 7 AGCGATA 95 0.0 41.68421 8 CGACCTC 55 7.8216544E-11 40.0 12 CGTTTTT 805 0.0 39.90062 1 CGAATGG 50 1.3424142E-9 39.6 2 CGACCCG 45 2.3441316E-8 39.11111 32 CCGATAT 40 4.115318E-7 38.500004 11 GCCGATT 40 4.115318E-7 38.500004 9 TAGTGCG 40 4.115318E-7 38.500004 1 GGACCGA 145 0.0 37.931034 8 ATTCGAT 35 7.277995E-6 37.714287 14 ACGAGAT 35 7.277995E-6 37.714287 5 >>END_MODULE