##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547150_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3501833 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.092785692521602 31.0 31.0 33.0 30.0 34.0 2 31.481407594251355 31.0 31.0 34.0 30.0 34.0 3 31.499961020414165 31.0 31.0 34.0 30.0 34.0 4 35.33283169128853 37.0 35.0 37.0 33.0 37.0 5 35.177758333992514 37.0 35.0 37.0 32.0 37.0 6 35.24802610518548 37.0 35.0 37.0 32.0 37.0 7 35.77969109320747 37.0 35.0 37.0 35.0 37.0 8 35.833226198964944 37.0 35.0 37.0 35.0 37.0 9 37.61479373802234 39.0 37.0 39.0 35.0 39.0 10 36.95001846175988 39.0 37.0 39.0 32.0 39.0 11 36.596536156921246 39.0 35.0 39.0 32.0 39.0 12 36.372290740306575 38.0 35.0 39.0 32.0 39.0 13 36.33424095323792 38.0 35.0 39.0 32.0 39.0 14 37.408071715584384 39.0 36.0 41.0 32.0 41.0 15 37.528345012454906 39.0 36.0 41.0 32.0 41.0 16 37.50718637924767 39.0 36.0 41.0 32.0 41.0 17 37.38223039191189 39.0 36.0 41.0 32.0 41.0 18 37.14288431230159 39.0 36.0 40.0 32.0 41.0 19 36.96747760387203 38.0 36.0 40.0 31.0 41.0 20 36.69219605846424 38.0 35.0 40.0 31.0 41.0 21 36.60170173734727 38.0 35.0 40.0 31.0 41.0 22 36.54144843571924 38.0 35.0 40.0 31.0 41.0 23 36.35094649002394 38.0 35.0 40.0 30.0 41.0 24 36.2740387676968 38.0 35.0 40.0 30.0 41.0 25 36.142296620084394 38.0 35.0 40.0 30.0 41.0 26 36.04725696513797 38.0 35.0 40.0 30.0 41.0 27 35.89621606741384 38.0 35.0 40.0 30.0 41.0 28 35.822976709626076 38.0 34.0 40.0 30.0 41.0 29 35.664145320465025 38.0 34.0 40.0 29.0 41.0 30 35.511643188010396 38.0 34.0 40.0 28.0 41.0 31 35.29333523329068 38.0 34.0 40.0 27.0 41.0 32 34.86961571268533 38.0 34.0 40.0 24.0 41.0 33 34.39642867035635 38.0 33.0 40.0 22.0 41.0 34 34.05397259092595 38.0 33.0 40.0 20.0 41.0 35 33.701067983538906 37.0 33.0 40.0 18.0 41.0 36 33.48691899356708 37.0 33.0 40.0 16.0 41.0 37 33.49518637810541 37.0 33.0 40.0 16.0 41.0 38 33.40453356856252 37.0 32.0 40.0 15.0 41.0 39 33.3002995859597 37.0 32.0 40.0 15.0 41.0 40 33.31400183846574 37.0 32.0 40.0 15.0 41.0 41 33.29900911893857 37.0 32.0 40.0 15.0 41.0 42 33.054386088657 37.0 32.0 40.0 13.0 41.0 43 33.09892761876423 37.0 32.0 40.0 14.0 41.0 44 32.9126908678969 37.0 31.0 40.0 12.0 41.0 45 32.756427276800466 37.0 31.0 40.0 10.0 41.0 46 32.8268903742697 37.0 31.0 40.0 12.0 41.0 47 32.70151403564933 37.0 31.0 40.0 10.0 41.0 48 32.72324779622558 37.0 31.0 40.0 11.0 41.0 49 32.63304218105204 36.0 31.0 40.0 10.0 41.0 50 32.20868071093053 36.0 30.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 8.0 14 24.0 15 90.0 16 274.0 17 909.0 18 2345.0 19 4853.0 20 8569.0 21 13534.0 22 21123.0 23 30792.0 24 45058.0 25 67665.0 26 94550.0 27 108145.0 28 103904.0 29 100935.0 30 106189.0 31 120198.0 32 143119.0 33 174490.0 34 235512.0 35 298958.0 36 293057.0 37 347892.0 38 484237.0 39 695398.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.172721828825075 22.185381198932102 25.79871741456546 22.843179557677367 2 38.13168703361925 23.38438183659815 26.898569977494645 11.585361152287959 3 24.711543925709766 23.45425952636805 39.875916412918606 11.958280135003582 4 22.405951397453848 25.874791859006415 38.82855064761797 12.890706095921765 5 20.420791054284997 29.573683268162704 37.553818243188644 12.45170743436366 6 18.844787858244523 37.14094875455226 34.579490226975416 9.4347731602278 7 80.86345065569945 2.733682617075115 15.209548827713942 1.1933178995114844 8 81.61654196530789 2.3091620873982284 14.855448560796589 1.2188473864973002 9 76.63220947429532 5.777088741810361 15.931427912181992 1.659273871712329 10 29.371931785439227 42.77619749428371 20.615717539928376 7.236153180348692 11 19.937558415835362 22.295095168730207 42.62710414802762 15.140242267406812 12 21.535378757353648 22.40340987134452 40.59454005944886 15.466671311852965 13 18.75677680803168 25.70045459049589 40.20403028927993 15.3387383121925 14 15.706745581528303 29.595443300694235 38.71572402224778 15.982087095529685 15 15.479321829453319 27.755920970531715 42.07119528544051 14.693561914574452 16 18.890192650534736 27.20369589297948 40.15951074765701 13.746600708828776 17 19.23741080742571 26.44118094723535 36.58609648147127 17.735311763867667 18 18.830024161631922 27.10169217092877 38.58876194267402 15.479521724765288 19 20.665805593813296 27.63124340880904 36.05697359068808 15.645977406689582 20 22.168047419737036 27.923518911381557 35.59184575620825 14.316587912673162 21 21.523642046893727 26.20339119541109 37.36857240193922 14.90439435575597 22 20.432413538852366 24.60237252890129 37.74177694938622 17.223436982860118 23 17.836601574089915 27.90584245450882 37.478457710576144 16.77909826082512 24 17.680083544817816 27.432661694603937 39.4946303835734 15.392624377004843 25 18.01156708500948 29.198394098176582 37.21642351305731 15.573615303756632 26 17.52787754298963 31.21242503568845 35.52048312983514 15.739214291486773 27 16.92185207004446 30.089984302506718 37.461238157273634 15.52692547017519 28 16.40058220937435 29.047530250585908 39.23291030725908 15.31897723278066 29 17.09356214302624 26.930267662678375 39.06499824520473 16.91117194909066 30 17.894771109873027 28.065815817030682 37.85520326069233 16.18420981240396 31 20.25516351008172 28.089603359155046 35.321929972103185 16.33330315866005 32 19.742289252514325 29.015147210046855 35.45408932978814 15.78847420765068 33 19.653278725741632 28.990303078416364 34.52865970478889 16.827758491053114 34 18.359356371363226 29.554236309955385 34.25000563990345 17.836401678777943 35 18.66254044667464 29.951513964258147 33.31235384440092 18.07359174466629 36 20.674429648701125 29.902710951664456 32.24408474076291 17.17877465887151 37 19.11321870574639 31.84734965944978 32.19305432326441 16.846377311539413 38 18.745982461185328 32.361537514781546 31.14300424948877 17.74947577454436 39 19.17244483103563 31.753684427555513 31.28647197053657 17.787398770872283 40 20.038991008423306 30.751609228652537 31.50649959606869 17.70290016685547 41 18.42523615489374 30.54017710153511 31.58891357754639 19.445673166024765 42 19.338357939970297 30.810149998586457 30.576957838937496 19.274534222505757 43 19.64788155231846 30.61345301160849 30.697437599108813 19.041227836964243 44 18.86631943899095 31.720987265811935 31.235641448350048 18.177051846847064 45 18.664168165643535 32.29520082768082 30.28448244105301 18.75614856562263 46 19.723356310823505 31.81922153340836 30.514647614549297 17.942774541218842 47 19.113561383424052 30.831253232235806 30.726022628720447 19.3291627556197 48 19.836382831505674 30.011739566107238 31.67889502440579 18.472982577981302 49 19.439904758450787 30.069480754793275 31.640943471604725 18.84967101515121 50 18.42249473347244 31.335960338485584 31.723100444824183 18.518444483217788 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2556.0 1 3206.0 2 3856.0 3 56179.0 4 108502.0 5 77004.5 6 45507.0 7 46165.0 8 46823.0 9 49144.5 10 51466.0 11 52826.5 12 54187.0 13 53719.5 14 53252.0 15 51216.5 16 49181.0 17 46689.0 18 44197.0 19 42631.5 20 41066.0 21 41209.5 22 41353.0 23 44370.0 24 47387.0 25 52872.0 26 58357.0 27 66157.5 28 73958.0 29 86809.5 30 99661.0 31 110076.0 32 120491.0 33 133538.5 34 146586.0 35 159419.0 36 172252.0 37 179175.5 38 186099.0 39 196788.0 40 207477.0 41 222367.5 42 237258.0 43 247302.0 44 257346.0 45 263429.5 46 269513.0 47 251677.0 48 233841.0 49 216657.5 50 199474.0 51 180144.5 52 160815.0 53 143760.0 54 126705.0 55 112888.0 56 99071.0 57 89923.5 58 80776.0 59 71815.0 60 62854.0 61 54946.5 62 47039.0 63 39543.0 64 32047.0 65 24964.5 66 17882.0 67 14063.0 68 10244.0 69 7895.0 70 5546.0 71 4492.5 72 3439.0 73 2661.5 74 1884.0 75 1426.0 76 968.0 77 774.0 78 580.0 79 381.0 80 182.0 81 131.5 82 81.0 83 56.5 84 32.0 85 27.0 86 22.0 87 16.0 88 10.0 89 8.0 90 6.0 91 4.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3501833.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.50972172335037 #Duplication Level Percentage of deduplicated Percentage of total 1 78.64091648452079 19.274669791048417 2 6.7015173224577715 3.2850464939530406 3 2.6949490242097265 1.9815735192598505 4 1.5808808196913888 1.549877958736719 5 1.081607972701899 1.3254955212340345 6 0.7757605973547254 1.1408205819062625 7 0.6069266891732248 1.0412922980677075 8 0.48316086548161596 0.9473710688454025 9 0.40688620172789114 0.8975400819679454 >10 5.298939693187718 30.830046501492863 >50 1.380353928579105 23.496137629967997 >100 0.34476639158216127 11.33281295114075 >500 0.002143291713436928 0.349071707646859 >1k 0.0010716458567183664 0.4818304400342142 >5k 0.0 0.0 >10k+ 1.1907176185759628E-4 2.0664134546979147 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 70806 2.021969637044371 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013964115364724703 0.0 2 0.0 0.0 0.0 0.05065918334769248 0.0 3 0.0 0.0 0.0 0.0979201463919039 0.0 4 0.0 0.0 0.0 0.1529199136566478 0.0 5 0.0 0.0 0.0 0.295273932252052 0.0 6 0.0 0.0 0.0 0.6266146900780248 0.0 7 0.0 0.0 0.0 0.8822236811407055 0.0 8 0.0 0.0 0.0 1.227528554331403 0.0 9 0.0 0.0 0.0 1.445014653754191 0.0 10 0.0 0.0 0.0 1.6425683349263085 0.0 11 0.0 0.0 0.0 1.7846653452634662 0.0 12 0.0 0.0 0.0 1.9042312982943503 0.0 13 0.0 0.0 0.0 1.98533168200768 0.0 14 0.0 0.0 0.0 2.038046931421344 0.0 15 0.0 0.0 0.0 2.077340638459915 0.0 16 0.0 0.0 0.0 2.1302272267124103 0.0 17 0.0 0.0 0.0 2.1907669497660227 0.0 18 0.0 0.0 0.0 2.268983129692364 0.0 19 0.0 0.0 0.0 2.323297541601784 0.0 20 0.0 0.0 0.0 2.383922934074812 0.0 21 0.0 0.0 0.0 2.4512305412622477 0.0 22 0.0 0.0 0.0 2.5268195256598474 0.0 23 0.0 0.0 0.0 2.607234554017853 0.0 24 0.0 0.0 0.0 2.6745992741515656 0.0 25 0.0 0.0 0.0 2.739679476434199 0.0 26 0.0 0.0 0.0 2.801846918456705 0.0 27 2.8556473138496324E-5 0.0 0.0 2.8695828727412187 0.0 28 2.8556473138496324E-5 0.0 0.0 2.942744556922046 0.0 29 2.8556473138496324E-5 0.0 0.0 3.0285853151763664 0.0 30 2.8556473138496324E-5 0.0 0.0 3.133016337443847 0.0 31 2.8556473138496324E-5 0.0 0.0 3.222769332518141 0.0 32 2.8556473138496324E-5 0.0 0.0 3.321089269533984 0.0 33 2.8556473138496324E-5 0.0 0.0 3.413155338932496 0.0 34 2.8556473138496324E-5 0.0 0.0 3.510390129969076 0.0 35 5.711294627699265E-5 0.0 0.0 3.614021570988679 0.0 36 5.711294627699265E-5 0.0 0.0 3.71693910017982 0.0 37 5.711294627699265E-5 0.0 0.0 3.820856105930808 0.0 38 5.711294627699265E-5 0.0 0.0 3.936766830399965 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 20 7.858694E-4 44.0 1 CGTTTTT 46360 0.0 43.183777 1 TCACGAC 255 0.0 39.686275 25 TACGGGA 1815 0.0 39.151516 4 CGTTCGA 85 0.0 38.823532 14 GTTTTTT 52540 0.0 38.472782 2 TAGGGCG 1035 0.0 38.04831 5 ACGGGAT 2910 0.0 37.95189 5 CTATGCG 135 0.0 37.48148 1 AGGGATT 12245 0.0 37.424255 6 TATGGGA 6150 0.0 37.239025 4 CGAACGG 130 0.0 37.230766 2 AGGGATC 5760 0.0 37.20139 6 GACCGAT 1810 0.0 37.19337 9 TGGGCGA 1605 0.0 37.14642 6 TAAGGGA 6175 0.0 37.017002 4 TAGGGAT 9240 0.0 37.0 5 AGGGCGA 2640 0.0 36.916668 6 AAGGGAT 8580 0.0 36.76923 5 CGTTGCG 30 1.3016394E-4 36.666664 1 >>END_MODULE