##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547149_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3402291 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.005970976615462 31.0 31.0 33.0 30.0 34.0 2 31.369421957145935 31.0 31.0 34.0 30.0 34.0 3 31.5317331762627 31.0 31.0 34.0 30.0 34.0 4 35.29710803690807 37.0 35.0 37.0 33.0 37.0 5 35.07683117052598 37.0 35.0 37.0 32.0 37.0 6 35.14884823197075 37.0 35.0 37.0 32.0 37.0 7 35.68694006479751 37.0 35.0 37.0 35.0 37.0 8 35.735156105106824 37.0 35.0 37.0 35.0 37.0 9 37.530707396868756 39.0 37.0 39.0 35.0 39.0 10 36.74966074330503 39.0 37.0 39.0 32.0 39.0 11 36.33549481805054 38.0 35.0 39.0 32.0 39.0 12 35.59722051993789 37.0 35.0 39.0 30.0 39.0 13 35.278088499778534 37.0 35.0 39.0 30.0 39.0 14 36.17592381133771 38.0 35.0 40.0 30.0 41.0 15 36.48068198751959 38.0 35.0 40.0 31.0 41.0 16 36.6099490020107 38.0 35.0 40.0 31.0 41.0 17 36.54687620782585 38.0 35.0 40.0 31.0 41.0 18 36.48572476604735 38.0 35.0 40.0 31.0 41.0 19 36.47236171156435 38.0 35.0 40.0 31.0 41.0 20 36.32040498593448 38.0 35.0 40.0 30.0 41.0 21 36.16789334010524 38.0 34.0 40.0 30.0 41.0 22 36.100625725430305 38.0 34.0 40.0 30.0 41.0 23 35.97757716785542 38.0 34.0 40.0 30.0 41.0 24 35.965756897337705 37.0 34.0 40.0 30.0 41.0 25 35.8120481169894 37.0 34.0 40.0 30.0 41.0 26 35.688358814692805 37.0 34.0 40.0 29.0 41.0 27 35.517507467762165 37.0 34.0 40.0 29.0 41.0 28 35.52777672456589 37.0 34.0 40.0 29.0 41.0 29 35.43537545730215 37.0 34.0 40.0 29.0 41.0 30 35.426820045669224 37.0 34.0 40.0 29.0 41.0 31 35.34186611315728 37.0 34.0 40.0 29.0 41.0 32 35.17915134243367 37.0 34.0 40.0 27.0 41.0 33 35.00908975746049 37.0 34.0 40.0 27.0 41.0 34 34.960808760920216 37.0 34.0 40.0 27.0 41.0 35 34.76983156349648 37.0 33.0 40.0 26.0 41.0 36 34.53434377012431 37.0 33.0 40.0 24.0 41.0 37 34.61940292585202 37.0 33.0 40.0 25.0 41.0 38 34.6384186420268 37.0 33.0 40.0 25.0 41.0 39 34.567146078921525 37.0 33.0 40.0 24.0 41.0 40 34.55154570846527 37.0 33.0 40.0 24.0 41.0 41 34.60681405558784 37.0 33.0 40.0 24.0 41.0 42 34.368044649913834 36.0 33.0 40.0 24.0 41.0 43 34.43567114041686 36.0 33.0 40.0 24.0 41.0 44 34.22935663057628 36.0 33.0 40.0 23.0 41.0 45 33.991426953191244 36.0 33.0 40.0 23.0 41.0 46 34.11126737836358 36.0 33.0 40.0 23.0 41.0 47 33.98623780270412 35.0 33.0 40.0 23.0 41.0 48 34.06461381463255 35.0 33.0 40.0 23.0 41.0 49 34.012349325792535 36.0 33.0 40.0 24.0 41.0 50 33.505476162973714 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 7.0 13 9.0 14 27.0 15 79.0 16 244.0 17 681.0 18 1710.0 19 3460.0 20 6036.0 21 9745.0 22 14998.0 23 21890.0 24 30582.0 25 41659.0 26 55441.0 27 68512.0 28 79310.0 29 92575.0 30 110410.0 31 134526.0 32 165458.0 33 207593.0 34 313761.0 35 413502.0 36 262878.0 37 317216.0 38 436311.0 39 613666.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.34041679562389 23.196604875949763 30.92087067214415 12.542107656282193 2 29.886391258125776 25.81563422999385 30.81167954181462 13.48629497006576 3 27.71579503340543 26.011619817352482 32.066128382316506 14.20645676692558 4 25.151111412868566 28.736283874600964 31.502419987002877 14.610184725527592 5 22.397584451183043 32.907296877310024 30.358573090896694 14.336545580610242 6 21.12132677657496 40.46508661369648 28.109382765906854 10.304203843821707 7 89.46789090057258 3.5703589140376293 5.520662400717634 1.441087784672152 8 90.38239233504719 2.690128504587056 5.249286436698095 1.6781927236676697 9 85.5023570882091 5.244172235708233 6.898381120251031 2.3550895558316443 10 44.00179173386403 32.10845280430157 13.512982869484121 10.376772592350273 11 36.831946473714325 22.9122670576973 26.053679711700145 14.202106756888227 12 34.34541607405128 23.133794258045533 27.342017481749796 15.178772186153388 13 20.976395023235813 35.17570954395141 28.287880137236936 15.560015295575836 14 16.563603759937052 38.048832389704465 29.676356314024872 15.711207536333605 15 15.266830497450101 25.85645966203361 43.65093991078365 15.22576992973264 16 17.986468529587857 23.23193401152341 42.07132781998953 16.7102696388992 17 18.75515645193195 22.84128547499317 29.550852646055258 28.852705427019615 18 20.600942129876604 25.654772034490875 35.39647255334714 18.347813282285376 19 27.10791052264489 25.837090360583503 28.065559353976482 18.98943976279513 20 28.87936393447827 25.652979124948455 27.672059797354194 17.795597143219084 21 22.791084007805328 28.687522613439004 29.89947068019755 18.62192269855812 22 22.76369070135388 24.61461997224811 28.266335830768153 24.355353495629856 23 18.626096356837202 30.319863879956184 28.403449322823942 22.650590440382672 24 18.555085382173363 25.817250787778 38.40973626300631 17.217927567042327 25 18.37279644804045 27.476456305471814 34.915326172864106 19.235421073623627 26 17.598406485512264 34.52373709362309 28.337993428545648 19.539862992318998 27 17.722234811778296 34.89630957493054 29.88953619781494 17.491919415476218 28 16.016060942464943 30.07749778017224 36.09459038042308 17.811850896939738 29 16.71362032230635 26.816871337578117 36.231204209163764 20.23830413095176 30 19.049046657090766 31.195127048215454 31.130200209211967 18.625626085481812 31 26.299484670770372 28.108883102591754 27.3333468536348 18.258285373003076 32 27.449004215100942 26.947489206537593 28.659776603471016 16.94372997489045 33 26.461022881346718 27.565954822794403 26.85781433745673 19.11520795840215 34 19.983299488491728 28.354100222467743 28.666301618527047 22.996298670513486 35 19.324566887429675 27.269125421664402 31.963668010760983 21.442639680144936 36 27.913485354427355 26.402679841318687 27.885122113305417 17.79871269094854 37 19.715685695315305 33.11324633901098 29.482751475402896 17.688316490270818 38 19.571782660566072 33.14431364042641 26.695600111807018 20.588303587200507 39 19.96628154381856 31.878490111516033 28.549262834954447 19.605965509710956 40 24.13999860682111 26.882092096178724 27.136068020048842 21.841841276951325 41 18.175341262696225 26.351243911822948 28.78666169354708 26.68675313193375 42 20.696142687383297 26.921536106112026 27.687020304847525 24.69530090165715 43 21.228578037563512 26.412526147822156 28.19500154454748 24.163894270066848 44 18.18603993603134 29.96657252421971 31.065273370208484 20.782114169540467 45 18.203028488744792 35.749146677929666 25.629259813460987 20.418565019864555 46 21.180081304038957 32.24853488428827 27.454118416090807 19.117265395581978 47 20.416977854040116 28.499002583847176 28.202966765629395 22.88105279648331 48 21.23104696217931 26.818576071241406 32.038852643703905 19.91152432287538 49 20.7936064257878 26.264155535196725 32.82332404841326 20.118913990602213 50 20.060159463138223 32.437495793275765 27.760970475482548 19.741374268103463 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2996.0 1 4494.0 2 5992.0 3 12514.5 4 19037.0 5 14747.0 6 10457.0 7 11163.0 8 11869.0 9 13100.0 10 14331.0 11 14536.0 12 14741.0 13 14745.5 14 14750.0 15 13946.0 16 13142.0 17 13737.0 18 14332.0 19 15464.0 20 16596.0 21 18560.0 22 20524.0 23 22987.5 24 25451.0 25 31792.5 26 38134.0 27 46391.0 28 54648.0 29 64110.0 30 73572.0 31 85958.5 32 98345.0 33 109848.5 34 121352.0 35 133419.5 36 145487.0 37 151760.5 38 158034.0 39 179402.0 40 200770.0 41 251477.0 42 302184.0 43 317340.0 44 332496.0 45 332011.0 46 331526.0 47 307438.5 48 283351.0 49 268292.0 50 253233.0 51 219203.5 52 185174.0 53 165273.5 54 145373.0 55 133029.5 56 120686.0 57 107519.0 58 94352.0 59 88796.0 60 83240.0 61 74713.0 62 66186.0 63 59180.5 64 52175.0 65 40595.0 66 29015.0 67 24692.0 68 20369.0 69 16076.5 70 11784.0 71 10110.0 72 8436.0 73 6020.0 74 3604.0 75 2999.0 76 2394.0 77 1859.5 78 1325.0 79 869.5 80 414.0 81 337.0 82 260.0 83 181.0 84 102.0 85 61.0 86 20.0 87 16.0 88 12.0 89 11.0 90 10.0 91 7.5 92 5.0 93 4.5 94 4.0 95 2.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3402291.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.866330042661364 #Duplication Level Percentage of deduplicated Percentage of total 1 81.60082209920596 13.763063972777026 2 8.152325314233094 2.7499961872999674 3 2.4737469345394305 1.2516909671989151 4 1.107831681049357 0.7474021905717924 5 0.6725013653266604 0.5671314990869918 6 0.4333247657451138 0.43851591088296055 7 0.33063839868116474 0.39036594498535016 8 0.24429318318499493 0.3296263563816364 9 0.20469676014790472 0.31072348037862474 >10 2.1261136408107886 8.613888597351071 >50 0.9829278489919802 12.199485532684665 >100 1.6441485630217159 55.19703485179801 >500 0.024160489890520446 2.5532030432669184 >1k 0.0022926012304873415 0.6091660840898726 >5k 1.7635394080671858E-4 0.2787053812461966 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9370 0.27540266250006246 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4373 0.1285310398199331 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03374196974920723 0.0 2 0.0 0.0 0.0 0.1196546679869535 0.0 3 0.0 0.0 0.0 0.16562369297629156 0.0 4 0.0 0.0 0.0 0.26552696403687986 0.0 5 0.0 0.0 0.0 0.4383516871425754 0.0 6 0.0 0.0 0.0 0.6602609829670655 0.0 7 0.0 0.0 0.0 0.7822082238115434 0.0 8 2.9391959711852984E-5 0.0 0.0 1.0938511726363207 0.0 9 2.9391959711852984E-5 0.0 0.0 1.2129767853484608 0.0 10 2.9391959711852984E-5 0.0 0.0 1.4176330008220932 0.0 11 2.9391959711852984E-5 0.0 0.0 1.6462730554205975 0.0 12 2.9391959711852984E-5 0.0 0.0 1.826916039809646 0.0 13 2.9391959711852984E-5 0.0 0.0 1.9025709441079555 0.0 14 2.9391959711852984E-5 0.0 0.0 1.9323743912557745 0.0 15 2.9391959711852984E-5 0.0 0.0 1.9764035469041301 0.0 16 2.9391959711852984E-5 0.0 0.0 2.0814798028740045 0.0 17 5.878391942370597E-5 0.0 0.0 2.1998706165933486 0.0 18 5.878391942370597E-5 0.0 0.0 2.3629959929941324 0.0 19 5.878391942370597E-5 0.0 0.0 2.4449407766707787 0.0 20 5.878391942370597E-5 0.0 0.0 2.529413268882644 0.0 21 5.878391942370597E-5 0.0 0.0 2.6467165800926495 0.0 22 5.878391942370597E-5 0.0 0.0 2.774336469161515 0.0 23 5.878391942370597E-5 0.0 0.0 2.9150063883424435 0.0 24 5.878391942370597E-5 0.0 0.0 3.020846835264826 0.0 25 5.878391942370597E-5 0.0 0.0 3.1067007495831485 0.0 26 5.878391942370597E-5 0.0 0.0 3.1974631211733504 0.0 27 5.878391942370597E-5 0.0 0.0 3.2883430606024 0.0 28 5.878391942370597E-5 0.0 0.0 3.384954432175261 0.0 29 5.878391942370597E-5 0.0 0.0 3.4983486127435897 0.0 30 5.878391942370597E-5 0.0 0.0 3.6395475871993312 0.0 31 5.878391942370597E-5 0.0 0.0 3.7674907878250274 0.0 32 5.878391942370597E-5 0.0 0.0 3.8807674005545088 0.0 33 5.878391942370597E-5 0.0 0.0 3.9982764554824968 0.0 34 5.878391942370597E-5 0.0 0.0 4.127894997811769 0.0 35 5.878391942370597E-5 0.0 0.0 4.283437248606894 0.0 36 5.878391942370597E-5 0.0 0.0 4.418023032127469 0.0 37 5.878391942370597E-5 0.0 0.0 4.555606795538653 0.0 38 5.878391942370597E-5 0.0 0.0 4.702831121735325 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTACC 25 4.444686E-5 44.0 26 TTAACGC 20 7.858661E-4 44.0 24 CGGACCG 20 7.858661E-4 44.0 24 CGCATTA 35 1.4472062E-7 43.999996 43 GTATCGA 35 1.4472062E-7 43.999996 14 CGAATAT 160 0.0 41.25 14 GCGTAAG 230 0.0 41.130432 1 AATACGG 545 0.0 40.77064 2 TAATACG 160 0.0 39.875 1 TACGTAA 45 2.3532266E-8 39.11111 21 CGAAAGG 545 0.0 38.752293 2 CGTTTTT 8210 0.0 38.72107 1 CGTAAGG 390 0.0 38.358974 2 CCGCTCG 190 0.0 38.210526 19 TAACGGG 1290 0.0 38.20155 3 ATTCGTC 35 7.2944204E-6 37.714283 27 GTACGAT 35 7.2944204E-6 37.714283 23 ATAACGG 695 0.0 37.669064 2 GACCGAT 1725 0.0 37.623188 9 GGCGATA 1310 0.0 37.450382 8 >>END_MODULE