##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547147_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5013297 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.993095162724252 31.0 31.0 33.0 30.0 34.0 2 31.380093579135647 31.0 31.0 34.0 30.0 34.0 3 31.53771819223956 31.0 31.0 34.0 30.0 34.0 4 35.310963623340086 37.0 35.0 37.0 33.0 37.0 5 35.09763854006655 37.0 35.0 37.0 32.0 37.0 6 35.158429871599466 37.0 35.0 37.0 32.0 37.0 7 35.65671592965667 37.0 35.0 37.0 35.0 37.0 8 35.695079306093376 37.0 35.0 37.0 35.0 37.0 9 37.47443787990219 39.0 37.0 39.0 35.0 39.0 10 36.72325278155274 39.0 37.0 39.0 32.0 39.0 11 36.38366169010134 38.0 35.0 39.0 32.0 39.0 12 35.85970031298764 37.0 35.0 39.0 31.0 39.0 13 35.682388855078806 37.0 35.0 39.0 30.0 39.0 14 36.599319569536775 38.0 35.0 40.0 31.0 41.0 15 36.8058088319922 38.0 35.0 40.0 31.0 41.0 16 36.87113410595861 38.0 35.0 41.0 31.0 41.0 17 36.77616626343901 38.0 35.0 40.0 31.0 41.0 18 36.69877787013217 38.0 35.0 40.0 31.0 41.0 19 36.6720732882971 38.0 35.0 40.0 31.0 41.0 20 36.5263520194395 38.0 35.0 40.0 30.0 41.0 21 36.42089945997614 38.0 35.0 40.0 30.0 41.0 22 36.35910040837397 38.0 35.0 40.0 30.0 41.0 23 36.181300848523435 38.0 34.0 40.0 30.0 41.0 24 36.140484595267345 38.0 34.0 40.0 30.0 41.0 25 35.99565236210821 38.0 34.0 40.0 30.0 41.0 26 35.88636879083764 38.0 34.0 40.0 30.0 41.0 27 35.70739635014642 38.0 34.0 40.0 29.0 41.0 28 35.64367341492036 38.0 34.0 40.0 29.0 41.0 29 35.53088815603783 38.0 34.0 40.0 29.0 41.0 30 35.51532135439013 38.0 34.0 40.0 28.0 41.0 31 35.46130600281611 38.0 34.0 40.0 27.0 41.0 32 35.306804085215774 38.0 34.0 40.0 27.0 41.0 33 35.13866523367756 38.0 34.0 40.0 26.0 41.0 34 35.052488412316286 38.0 34.0 40.0 26.0 41.0 35 34.86698693494521 37.0 33.0 40.0 25.0 41.0 36 34.66647118652655 37.0 33.0 40.0 24.0 41.0 37 34.76062140343969 37.0 33.0 40.0 24.0 41.0 38 34.71755134395588 37.0 33.0 40.0 24.0 41.0 39 34.62718247093679 37.0 33.0 40.0 24.0 41.0 40 34.6196471104744 37.0 33.0 40.0 24.0 41.0 41 34.648274578585706 37.0 33.0 40.0 24.0 41.0 42 34.41555267920492 37.0 33.0 40.0 23.0 41.0 43 34.479732200186824 37.0 33.0 40.0 24.0 41.0 44 34.28848280881823 37.0 33.0 40.0 23.0 41.0 45 34.034516407067045 37.0 33.0 40.0 23.0 41.0 46 34.150427552965645 37.0 33.0 40.0 23.0 41.0 47 34.02077794313802 36.0 33.0 40.0 23.0 41.0 48 34.0776062140344 36.0 33.0 40.0 23.0 41.0 49 34.00100313227004 36.0 33.0 40.0 23.0 41.0 50 33.531547602306425 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 6.0 11 3.0 12 16.0 13 22.0 14 62.0 15 156.0 16 492.0 17 1313.0 18 2879.0 19 5745.0 20 9880.0 21 15643.0 22 23126.0 23 33298.0 24 46936.0 25 64339.0 26 84820.0 27 102295.0 28 115946.0 29 134037.0 30 157370.0 31 190106.0 32 230200.0 33 285431.0 34 413134.0 35 514537.0 36 411304.0 37 505725.0 38 700118.0 39 964358.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.12498740848587 24.11818011181065 28.929285458252323 13.827547021451153 2 31.687290818796495 25.697839166520552 28.950329493744338 13.664540520938614 3 29.478804068460335 26.041265857578356 30.970915946132855 13.509014127828452 4 26.42711971782242 28.02042248843426 30.388285393823665 15.164172399919654 5 23.14660392153108 32.24758078366393 29.549755380540986 15.056059914264006 6 21.32482875042113 40.35633635908665 27.83312059907881 10.485714291413416 7 87.22254037612373 4.1036268148485915 6.850122783469641 1.823710025558031 8 87.63171222451014 3.529593399313865 6.812203625677872 2.0264907504981253 9 82.35835618755482 6.088328698658787 8.547867800371693 3.005447313414705 10 39.72479587784247 31.779784840195983 16.223215979424317 12.272203302537232 11 33.04061179698709 26.21282960095921 25.56225972648339 15.18429887557031 12 30.960024909754996 24.04902402550657 28.332532463167453 16.658418601570983 13 23.23343300825784 30.380845180327437 29.19593632693216 17.189785484482567 14 18.97605507912258 32.80378162315139 30.353677430242016 17.866485867484013 15 18.286528805295198 26.858871517087458 37.969563742184036 16.885035935433308 16 21.121589245560358 25.21456438746797 36.42018416223895 17.243662204732736 17 21.062645999229648 25.45364856700092 29.595314221359715 23.88839121240972 18 23.130327207823516 26.045315089052174 32.46153180232489 18.362825900799415 19 26.48053765815191 26.866491253161346 28.427440065888774 18.225531022797973 20 27.67398380746243 26.748844123936806 28.17008447734096 17.407087591259803 21 24.367556919129267 27.741244933224586 30.36217483225111 17.52902331539504 22 23.601753496750742 25.048386321416828 29.67234935412763 21.6775108277048 23 21.2947088512809 28.536350429667344 29.762748945454458 20.406191773597296 24 20.11169495842756 26.74417653691772 34.612471593045456 18.531656911609264 25 20.623094941313074 27.788977991928267 32.62290265268545 18.965024414073213 26 19.639769995673507 31.63371330284242 29.09370819243304 19.63280850905103 27 19.783627421235966 31.086169440988638 30.46224869581834 18.66795444195706 28 18.034259689780995 29.67538129099473 33.93146266818024 18.35889635104403 29 18.93891385250066 27.69632439490419 33.552390771980996 19.812370980614155 30 20.209155771142225 29.303949077822438 31.2404391760552 19.246455974980137 31 24.304783857808545 28.28234592923579 29.09402734368221 18.318842869273453 32 25.00045379318241 27.480538256560504 29.10918702801769 18.409820922239398 33 24.086923236345264 28.04741071594202 28.246620936282053 19.619045111430662 34 20.418578831455626 28.57307277027473 30.10078995918255 20.907558439087094 35 20.531937365769473 28.565313405529334 30.65758920726221 20.245160021438984 36 24.718363982824076 28.182212224809344 28.065163504176994 19.03426028818959 37 20.74171947123819 31.61069451899618 28.565752238496938 19.081833771268688 38 20.88304363376038 31.751380379020034 27.533916302983847 19.831659684235746 39 21.044594006698585 30.921527290324114 27.80794754430069 20.225931158676616 40 23.309969467198933 27.412977926502258 28.59224179217788 20.684810814120926 41 19.29730075836321 27.778805045861038 28.95475771732654 23.96913647844921 42 20.589743635775022 27.85693726104797 28.269998765283606 23.283320337893407 43 20.55521546000566 27.556276837378675 29.27859650046666 22.609911202149004 44 19.895250570632463 29.399415195229807 30.072963959645715 20.632370274492015 45 19.372261408011536 32.431531584903105 27.327245922194514 20.86896108489084 46 20.744751408105287 31.062871399799374 28.221228465020125 19.971148727075217 47 20.801779746940984 29.154905444461 28.79611959953699 21.247195209061022 48 20.95359600677957 28.926772142165124 30.51778101317357 19.601850837881738 49 21.18775328890349 27.52063163223723 30.8058549094538 20.485760169405484 50 19.729192186299755 30.896653439842087 29.061733226657026 20.312421147201135 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4612.0 1 6708.5 2 8805.0 3 24082.0 4 39359.0 5 30020.5 6 20682.0 7 21026.0 8 21370.0 9 22366.5 10 23363.0 11 24001.5 12 24640.0 13 24840.0 14 25040.0 15 25729.5 16 26419.0 17 25342.5 18 24266.0 19 25096.5 20 25927.0 21 30104.0 22 34281.0 23 37916.0 24 41551.0 25 50009.5 26 58468.0 27 69154.0 28 79840.0 29 93194.5 30 106549.0 31 128197.5 32 149846.0 33 163763.5 34 177681.0 35 195912.0 36 214143.0 37 232310.5 38 250478.0 39 271607.5 40 292737.0 41 334349.5 42 375962.0 43 400134.0 44 424306.0 45 429647.5 46 434989.0 47 411602.5 48 388216.0 49 355166.0 50 322116.0 51 304830.5 52 287545.0 53 262015.0 54 236485.0 55 209925.5 56 183366.0 57 177670.0 58 171974.0 59 158816.0 60 145658.0 61 134582.5 62 123507.0 63 109651.0 64 95795.0 65 79759.5 66 63724.0 67 53241.5 68 42759.0 69 35334.5 70 27910.0 71 21775.0 72 15640.0 73 13414.5 74 11189.0 75 9026.0 76 6863.0 77 4594.0 78 2325.0 79 1993.0 80 1661.0 81 1097.5 82 534.0 83 506.5 84 479.0 85 313.0 86 147.0 87 100.5 88 54.0 89 36.0 90 18.0 91 15.0 92 12.0 93 9.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5013297.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.444542448027185 #Duplication Level Percentage of deduplicated Percentage of total 1 81.87900197569869 14.283417255671774 2 7.273410412068561 2.5376263335050586 3 2.249805424839163 1.1774047870022584 4 1.144269456546509 0.7984502842682629 5 0.657837390966408 0.5737836145306481 6 0.47188706627871707 0.4939112375024458 7 0.3468645116939422 0.42356248885714387 8 0.26404625350251 0.3684932861973666 9 0.2084157341940665 0.32721454097866304 >10 2.690345195493053 11.565843546224121 >50 1.2336605568313739 15.723851776751225 >100 1.5678962786560198 49.69054478101281 >500 0.011164216205478162 1.244319876399466 >1k 0.0012792331068776988 0.39232917193310884 >5k 0.0 0.0 >10k+ 1.1629391880706353E-4 0.39924701916560223 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19680 0.3925560364765941 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013464193324273427 0.0 2 0.0 0.0 0.0 0.05724775531950331 0.0 3 0.0 0.0 0.0 0.08708839711670782 0.0 4 0.0 0.0 0.0 0.15365137952130106 0.0 5 0.0 0.0 0.0 0.2679673675826507 0.0 6 0.0 0.0 0.0 0.4643451205863128 0.0 7 0.0 0.0 0.0 0.5686876321111636 0.0 8 0.0 0.0 0.0 0.8167678874800356 0.0 9 0.0 0.0 0.0 0.9130119360572494 0.0 10 0.0 0.0 0.0 1.0673415119830323 0.0 11 0.0 0.0 0.0 1.2200753316629755 0.0 12 0.0 0.0 0.0 1.3494313223413654 0.0 13 0.0 0.0 0.0 1.4067189715670148 0.0 14 0.0 0.0 0.0 1.4327896392334227 0.0 15 0.0 0.0 0.0 1.4651635440708979 0.0 16 0.0 0.0 0.0 1.5317464734285642 0.0 17 0.0 0.0 0.0 1.6072456908098602 0.0 18 0.0 0.0 0.0 1.7079179629692796 0.0 19 1.994695307299767E-5 0.0 0.0 1.7650460365703449 0.0 20 1.994695307299767E-5 0.0 0.0 1.8278589917972146 0.0 21 1.994695307299767E-5 0.0 0.0 1.9157851609429881 0.0 22 1.994695307299767E-5 0.0 0.0 2.0097353099168074 0.0 23 1.994695307299767E-5 0.0 0.0 2.1090312423141895 0.0 24 1.994695307299767E-5 0.0 0.0 2.192868286079999 0.0 25 1.994695307299767E-5 0.0 0.0 2.2656148239372214 0.0 26 1.994695307299767E-5 0.0 0.0 2.3403760040548165 0.0 27 1.994695307299767E-5 0.0 0.0 2.414558722533295 0.0 28 1.994695307299767E-5 0.0 0.0 2.498116508956082 0.0 29 1.994695307299767E-5 0.0 0.0 2.5894735540304117 0.0 30 1.994695307299767E-5 0.0 0.0 2.704966412323068 0.0 31 1.994695307299767E-5 0.0 0.0 2.8045017081573262 0.0 32 1.994695307299767E-5 0.0 0.0 2.902122096496577 0.0 33 1.994695307299767E-5 0.0 0.0 3.0018568618615653 0.0 34 1.994695307299767E-5 0.0 0.0 3.1107073847809135 0.0 35 1.994695307299767E-5 0.0 0.0 3.226818598618833 0.0 36 1.994695307299767E-5 0.0 0.0 3.3350308190398454 0.0 37 1.994695307299767E-5 0.0 0.0 3.4514811310800058 0.0 38 1.994695307299767E-5 0.0 0.0 3.5904914470457268 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 16850 0.0 38.72522 1 CGGTCTA 475 0.0 38.442104 31 GGGCGAT 6875 0.0 37.632 7 TATAGCG 385 0.0 37.142857 1 GACCGAT 2435 0.0 37.04312 9 TCACGAC 495 0.0 36.88889 25 AGGGCGA 3415 0.0 36.72035 6 CGAACTA 30 1.3017195E-4 36.666668 30 TAAGGGA 5510 0.0 36.45372 4 CGTTAGG 750 0.0 36.373333 2 TTAGCGG 1150 0.0 36.347824 2 TAGGGAC 3985 0.0 35.939774 5 GGCGATA 1550 0.0 35.90968 8 TAGGGCG 1505 0.0 35.375416 5 ATGGGCG 1500 0.0 35.2 5 CGTACCG 25 0.002353497 35.2 43 TGGGCGA 2305 0.0 35.123642 6 ATAGCGG 1015 0.0 35.1133 2 ATAGGGA 6465 0.0 34.982212 4 CGACGGT 535 0.0 34.953274 28 >>END_MODULE