##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547145_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2984490 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.03971432305017 31.0 31.0 33.0 30.0 34.0 2 31.42247419157042 31.0 31.0 34.0 30.0 34.0 3 31.539153423197934 31.0 31.0 34.0 30.0 34.0 4 35.31794846020593 37.0 35.0 37.0 33.0 37.0 5 35.126262108433934 37.0 35.0 37.0 32.0 37.0 6 35.201413306796134 37.0 35.0 37.0 32.0 37.0 7 35.73530921530982 37.0 35.0 37.0 35.0 37.0 8 35.79137708620233 37.0 35.0 37.0 35.0 37.0 9 37.569677901416995 39.0 37.0 39.0 35.0 39.0 10 36.851394710654084 39.0 37.0 39.0 32.0 39.0 11 36.497167690292144 39.0 35.0 39.0 32.0 39.0 12 36.20482326963736 38.0 35.0 39.0 31.0 39.0 13 36.1224279525145 38.0 35.0 39.0 31.0 39.0 14 37.14293865953647 39.0 36.0 41.0 31.0 41.0 15 37.28507081611934 39.0 36.0 41.0 32.0 41.0 16 37.276260600638636 39.0 35.0 41.0 32.0 41.0 17 37.161095865625285 39.0 35.0 41.0 32.0 41.0 18 37.0261860485376 39.0 36.0 40.0 31.0 41.0 19 36.97932243029798 38.0 35.0 40.0 31.0 41.0 20 36.82342142208552 38.0 35.0 40.0 31.0 41.0 21 36.718301284306534 38.0 35.0 40.0 31.0 41.0 22 36.649709665638014 38.0 35.0 40.0 31.0 41.0 23 36.464109445834964 38.0 35.0 40.0 30.0 41.0 24 36.440115396600426 38.0 35.0 40.0 30.0 41.0 25 36.310396081072476 38.0 35.0 40.0 30.0 41.0 26 36.19996180251902 38.0 35.0 40.0 30.0 41.0 27 36.02867324065418 38.0 34.0 40.0 30.0 41.0 28 35.97495049405426 38.0 34.0 40.0 30.0 41.0 29 35.856116790473415 38.0 34.0 40.0 29.0 41.0 30 35.802335407389535 38.0 34.0 40.0 29.0 41.0 31 35.71247851391695 38.0 34.0 40.0 29.0 41.0 32 35.492151087790546 38.0 34.0 40.0 27.0 41.0 33 35.24146236040328 38.0 34.0 40.0 26.0 41.0 34 35.1141203354677 38.0 34.0 40.0 25.0 41.0 35 34.8969847444622 38.0 34.0 40.0 24.0 41.0 36 34.72197092300527 38.0 33.0 40.0 24.0 41.0 37 34.815525935754515 38.0 34.0 40.0 24.0 41.0 38 34.77013828158245 38.0 33.0 40.0 24.0 41.0 39 34.69728362299757 38.0 33.0 40.0 23.0 41.0 40 34.71390522333799 38.0 33.0 40.0 23.0 41.0 41 34.73326330461821 38.0 34.0 40.0 23.0 41.0 42 34.506774356757774 38.0 33.0 40.0 23.0 41.0 43 34.568201267218186 38.0 33.0 40.0 23.0 41.0 44 34.39025160077601 38.0 33.0 40.0 23.0 41.0 45 34.21798297196506 38.0 33.0 40.0 23.0 41.0 46 34.297886070987005 38.0 33.0 40.0 23.0 41.0 47 34.16045387989238 37.0 33.0 40.0 22.0 41.0 48 34.199505108075414 37.0 33.0 40.0 23.0 41.0 49 34.10786466029372 37.0 33.0 40.0 22.0 41.0 50 33.652441790724716 37.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 3.0 13 10.0 14 21.0 15 52.0 16 246.0 17 624.0 18 1500.0 19 3127.0 20 5354.0 21 8545.0 22 13145.0 23 18933.0 24 27527.0 25 39533.0 26 53189.0 27 63673.0 28 68506.0 29 75938.0 30 87371.0 31 104948.0 32 126787.0 33 156363.0 34 214496.0 35 270081.0 36 249415.0 37 308647.0 38 441904.0 39 644545.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.642190122935578 22.968714922817636 28.031958559083797 17.357136395162993 2 32.36700407774863 24.992109204587717 29.948399894119266 12.69248682354439 3 27.68610382343382 25.52878381230964 33.961916441335035 12.823195922921505 4 24.476476717965216 27.83041658708858 33.62447185281237 14.068634842133832 5 22.213443502910042 31.998364879761702 32.266115818783106 13.522075798545144 6 20.55751568944778 40.39835951871174 29.332549279776444 9.711575512064037 7 87.62351356513173 2.9668385553310617 8.23923015322551 1.1704177263116982 8 88.47303894467731 2.5307506475143158 7.852530918180325 1.1436794896280438 9 82.83599542970491 6.31464672356081 8.956739677465832 1.8926181692684512 10 31.538788871800545 46.56021631836595 14.182892219441179 7.718102590392329 11 23.436298999158986 23.842599573126396 37.322557622910445 15.398543804804172 12 24.696346779516766 24.01344953409125 35.0477971110642 16.242406575327777 13 20.93617334955051 27.391212568981636 35.25309181803256 16.419522263435294 14 16.977976136626356 32.02741506924131 33.88190277065763 17.112706023474697 15 16.65326404176258 29.027136964774552 38.83976826861541 15.479830724847462 16 20.281354603299057 27.74477381395146 36.85467198750875 15.11919959524073 17 20.213771867220196 26.529256254837506 32.55105562424401 20.705916253698287 18 20.667283187412256 27.818019159052298 34.62665313001551 16.888044523519934 19 23.344289979192425 27.610680551786064 31.96552844874669 17.07950102027482 20 25.347345777670554 28.12041588345077 31.240412934873298 15.291825404005374 21 23.40182074659322 27.089921561137746 33.25807759449688 16.250180097772148 22 22.04822264440491 25.057983105991312 33.347037517297764 19.546756732306022 23 19.568603010899686 28.690496533746135 33.372536011177786 18.36836444417639 24 19.053975721144987 27.503057473806248 36.3285519468988 17.114414858149967 25 19.504069371986503 28.92644974518259 33.95652188481114 17.612958998019764 26 18.935496516992853 32.54251145086765 31.06188997115085 17.460102060988643 27 18.495421328267142 31.484240188440904 33.28139816183 16.73894032146196 28 17.559482524652452 29.67716427262279 35.7196706975061 17.043682505218648 29 18.310364584903954 27.55217809407973 35.844784200985764 18.29267312003056 30 19.48061477840435 29.505644180412734 33.407382835928416 17.606358205254498 31 21.83093258814739 28.47260335936793 31.653783393477614 18.042680659007065 32 22.121400976381224 28.81872614751599 31.89054076240832 17.169332113694466 33 21.982047183940974 29.057158844559705 31.46128819329266 17.49950577820666 34 19.82328639063961 29.262353031841286 31.654017939413436 19.260342638105673 35 19.72899892443935 28.834139166155694 32.10123002590058 19.335631883504384 36 22.052779536872297 29.69659807873372 30.24014153171899 18.010480852674995 37 20.157179283562684 31.46222637703594 30.947565580718983 17.433028758682386 38 19.645601090973667 31.308900348133186 29.779861885950364 19.265636674942787 39 19.977282550787574 30.817560119149334 30.431028416915453 18.77412891314764 40 21.52002519693482 28.880780300821918 30.674721644234022 18.924472858009242 41 18.94782693190461 29.37654339602411 30.6161186668409 21.059511005230373 42 20.468120181337515 29.593632412908065 29.252569115661302 20.685678290093115 43 20.14233587648141 29.498942867960693 29.747729092742816 20.610992162815087 44 19.269824995225314 30.98482487795235 30.586063280493487 19.159286846328854 45 19.16501646847535 31.86165810574001 29.242952732292622 19.730372693492022 46 20.162171761339458 31.52783222594145 29.42395518162232 18.88604083109677 47 19.986965947280773 30.30031931753834 29.981236325134276 19.731478410046606 48 20.699516500306586 28.799560393903146 31.149610151148106 19.351312954642168 49 19.60298074377867 29.095356325536358 31.687591514798175 19.6140714158868 50 19.140891743647995 31.258305439120253 30.55352840853881 19.047274408692942 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2399.0 1 2955.5 2 3512.0 3 22318.0 4 41124.0 5 30532.5 6 19941.0 7 20166.5 8 20392.0 9 20939.0 10 21486.0 11 21709.0 12 21932.0 13 21933.0 14 21934.0 15 21074.5 16 20215.0 17 19614.5 18 19014.0 19 20233.0 20 21452.0 21 23492.5 22 25533.0 23 30929.0 24 36325.0 25 43077.5 26 49830.0 27 58454.5 28 67079.0 29 78467.5 30 89856.0 31 102173.5 32 114491.0 33 127979.5 34 141468.0 35 151713.5 36 161959.0 37 168313.5 38 174668.0 39 185562.0 40 196456.0 41 210376.0 42 224296.0 43 232095.5 44 239895.0 45 236048.5 46 232202.0 47 219190.0 48 206178.0 49 193562.5 50 180947.0 51 163829.0 52 146711.0 53 128820.0 54 110929.0 55 99845.5 56 88762.0 57 82938.5 58 77115.0 59 72794.0 60 68473.0 61 60884.0 62 53295.0 63 44290.5 64 35286.0 65 27690.5 66 20095.0 67 15971.5 68 11848.0 69 9548.5 70 7249.0 71 5562.5 72 3876.0 73 3276.5 74 2677.0 75 2221.5 76 1766.0 77 1349.5 78 933.0 79 711.0 80 489.0 81 352.0 82 215.0 83 169.5 84 124.0 85 79.5 86 35.0 87 25.0 88 15.0 89 11.5 90 8.0 91 5.0 92 2.0 93 1.0 94 0.0 95 1.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2984490.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.500146412908784 #Duplication Level Percentage of deduplicated Percentage of total 1 79.44867156120485 16.28709399315802 2 5.729705937875665 2.34919621258728 3 2.0842255249197437 1.2818078525512926 4 1.2073452073263105 0.9900301408445231 5 0.8468036467773813 0.8679799370960705 6 0.6437976745209364 0.7918767952781635 7 0.5240176504574864 0.751970699012885 8 0.4182527552437279 0.685939417607914 9 0.3845310110387175 0.7094647823937799 >10 6.174276876806668 31.78335435466807 >50 2.021871252598399 28.97694021246696 >100 0.5150053691129548 13.514007570046111 >500 9.970214114209607E-4 0.1253256556455477 >1k 3.3234047047365356E-4 0.10836121516947193 >5k 0.0 0.0 >10k+ 1.6617023523682678E-4 0.7766511614739989 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22799 0.7639161129707253 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01822756986955895 0.0 2 0.0 0.0 0.0 0.062355712366266934 0.0 3 0.0 0.0 0.0 0.10336774457277458 0.0 4 0.0 0.0 0.0 0.1468592623865384 0.0 5 0.0 0.0 0.0 0.24670881792199 0.0 6 0.0 0.0 0.0 0.42060787605252486 0.0 7 0.0 0.0 0.0 0.5217976940783853 0.0 8 0.0 0.0 0.0 0.706251319320889 0.0 9 0.0 0.0 0.0 0.7995335886533378 0.0 10 0.0 0.0 0.0 0.9161364253188987 0.0 11 0.0 0.0 0.0 1.0329067947957606 0.0 12 0.0 0.0 0.0 1.1479683295973517 0.0 13 0.0 0.0 0.0 1.2093523516580722 0.0 14 0.0 0.0 0.0 1.2509004888607433 0.0 15 0.0 0.0 0.0 1.2865179645433558 0.0 16 0.0 0.0 0.0 1.3455230206836009 0.0 17 0.0 0.0 0.0 1.421080318580394 0.0 18 0.0 0.0 0.0 1.5153677847806493 0.0 19 0.0 0.0 0.0 1.573836735924731 0.0 20 0.0 0.0 0.0 1.6335119233101802 0.0 21 0.0 0.0 0.0 1.7083655833995088 0.0 22 0.0 0.0 0.0 1.7969904405777872 0.0 23 3.3506562260218663E-5 0.0 0.0 1.8906412820950984 0.0 24 3.3506562260218663E-5 0.0 0.0 1.9674718293577798 0.0 25 3.3506562260218663E-5 0.0 0.0 2.0329771585765073 0.0 26 3.3506562260218663E-5 0.0 0.0 2.1009284668402306 0.0 27 3.3506562260218663E-5 0.0 0.0 2.1734366675713437 0.0 28 3.3506562260218663E-5 0.0 0.0 2.2491950048416984 0.0 29 3.3506562260218663E-5 0.0 0.0 2.334804271416557 0.0 30 3.3506562260218663E-5 0.0 0.0 2.4395457850420006 0.0 31 3.3506562260218663E-5 0.0 0.0 2.532023896880204 0.0 32 3.3506562260218663E-5 0.0 0.0 2.629595006181961 0.0 33 3.3506562260218663E-5 0.0 0.0 2.7173486927414734 0.0 34 3.3506562260218663E-5 0.0 0.0 2.820113319193564 0.0 35 3.3506562260218663E-5 0.0 0.0 2.9312545862107093 0.0 36 3.3506562260218663E-5 0.0 0.0 3.03559402108903 0.0 37 3.3506562260218663E-5 0.0 0.0 3.1436191778159754 0.0 38 3.3506562260218663E-5 0.0 0.0 3.2570388910668155 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTC 20 7.8585045E-4 44.0 41 CGTTTTT 17235 0.0 42.212936 1 ACGGGTC 110 0.0 40.0 5 GCGTAAG 150 0.0 39.6 1 CGTAAGG 515 0.0 39.300972 2 GGACGTA 125 0.0 38.72 8 TACGGGA 1780 0.0 38.314606 4 TAGGGCG 770 0.0 38.0 5 TAGGGAC 4055 0.0 37.977806 5 GACGTAC 70 0.0 37.714287 9 CCGCTCG 35 7.2941148E-6 37.714287 19 GGCGATA 1040 0.0 37.653843 8 ACGGGAT 2475 0.0 37.511112 5 TAGGGAT 8860 0.0 37.395035 5 AGGGATT 11325 0.0 37.356293 6 CGTTAGG 385 0.0 37.142857 2 CGAGGGA 2530 0.0 37.04348 4 ACGCCGG 245 0.0 36.816326 27 GTAGGGA 5805 0.0 36.79931 4 AGGGCGA 2175 0.0 36.71724 6 >>END_MODULE