##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547143_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1674029 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.032412819610652 31.0 31.0 33.0 30.0 34.0 2 31.400429741659195 31.0 31.0 34.0 30.0 34.0 3 31.550126073084755 31.0 31.0 34.0 30.0 34.0 4 35.312637355744734 37.0 35.0 37.0 33.0 37.0 5 35.09930353655761 37.0 35.0 37.0 32.0 37.0 6 35.16324448381719 37.0 35.0 37.0 32.0 37.0 7 35.68589671982982 37.0 35.0 37.0 35.0 37.0 8 35.74705754798752 37.0 35.0 37.0 35.0 37.0 9 37.570977563710066 39.0 37.0 39.0 35.0 39.0 10 36.83765155800766 39.0 37.0 39.0 32.0 39.0 11 36.33055819224159 38.0 35.0 39.0 32.0 39.0 12 35.09185085801978 35.0 34.0 39.0 30.0 39.0 13 34.49349264558738 35.0 33.0 39.0 26.0 39.0 14 35.301895606348516 36.0 33.0 40.0 27.0 41.0 15 35.78928740183115 37.0 34.0 40.0 30.0 41.0 16 36.04999674438137 36.0 34.0 40.0 31.0 41.0 17 36.02566801411445 36.0 34.0 40.0 31.0 41.0 18 36.01546568189679 36.0 35.0 40.0 31.0 41.0 19 35.96012673615571 36.0 34.0 40.0 31.0 41.0 20 35.74046506960154 36.0 34.0 40.0 30.0 41.0 21 35.557306952269045 36.0 34.0 40.0 30.0 41.0 22 35.46885687165515 35.0 34.0 40.0 30.0 41.0 23 35.38393839055357 35.0 34.0 40.0 29.0 41.0 24 35.33524269890187 35.0 34.0 40.0 29.0 41.0 25 35.20603824664925 35.0 34.0 40.0 29.0 41.0 26 35.05995415850024 35.0 34.0 40.0 29.0 41.0 27 34.93422276436071 35.0 34.0 40.0 29.0 41.0 28 34.9944708245795 36.0 34.0 40.0 29.0 41.0 29 34.98041192834771 36.0 34.0 40.0 29.0 41.0 30 34.949967413945636 36.0 34.0 40.0 29.0 41.0 31 34.77909462739296 35.0 34.0 40.0 28.0 41.0 32 34.5511159006206 35.0 33.0 40.0 27.0 41.0 33 34.354486093132195 35.0 33.0 40.0 26.0 41.0 34 34.32417956917114 35.0 33.0 40.0 26.0 41.0 35 34.07697118747644 35.0 33.0 39.0 25.0 41.0 36 33.75386149224416 35.0 33.0 39.0 23.0 41.0 37 33.79631953807252 35.0 33.0 39.0 23.0 41.0 38 33.85272118941786 35.0 33.0 39.0 23.0 41.0 39 33.85362917846704 35.0 33.0 39.0 23.0 41.0 40 33.780746928517964 35.0 33.0 39.0 23.0 41.0 41 33.87671599476472 35.0 33.0 39.0 23.0 41.0 42 33.63705885620858 35.0 33.0 39.0 23.0 41.0 43 33.68945161642959 35.0 33.0 39.0 23.0 41.0 44 33.524234048514096 35.0 33.0 39.0 23.0 41.0 45 33.338909899410346 35.0 32.0 39.0 23.0 41.0 46 33.42895194766638 35.0 32.0 39.0 23.0 41.0 47 33.30226059405184 35.0 32.0 39.0 23.0 41.0 48 33.4103811821659 35.0 32.0 39.0 23.0 41.0 49 33.39238448079454 35.0 32.0 39.0 23.0 41.0 50 32.83768859440308 35.0 32.0 38.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 2.0 12 4.0 13 8.0 14 10.0 15 34.0 16 131.0 17 407.0 18 905.0 19 1857.0 20 3404.0 21 5557.0 22 8488.0 23 12093.0 24 17217.0 25 23772.0 26 31347.0 27 37339.0 28 42623.0 29 49377.0 30 58447.0 31 71422.0 32 88475.0 33 113711.0 34 190432.0 35 272140.0 36 112999.0 37 126604.0 38 171217.0 39 234003.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.754766494487253 23.869060810774485 31.143307553214434 13.232865141523833 2 29.234141105082408 25.9815690170242 31.66438574242143 13.119904135471966 3 27.729627145049456 25.44191289398212 32.71299362197429 14.115466338994128 4 24.176164212208988 28.357334311412764 32.45427647908131 15.012224997296942 5 22.677623864341655 32.111689821383024 31.236316694633125 13.974369619642193 6 20.844800179686253 40.50712383118811 27.989120857523975 10.658955131601664 7 87.7755403281544 4.422742975181434 6.173608700924536 1.6281079957396198 8 89.51917798317712 3.2587249085887997 5.51400244559682 1.7080946626372662 9 85.77013898803426 5.0081569674121535 7.040081145547658 2.1816228990059314 10 55.79102870977742 23.62402323974077 11.417723348878663 9.16722470160314 11 50.452590725728165 19.296320434114346 18.945251247140877 11.305837593016609 12 45.196767797929425 21.832656423514766 21.420118767357078 11.55045701119873 13 20.841335484630193 45.52352438338882 21.25279789059807 12.382342241382915 14 13.601377276020903 46.92111068565718 25.821356738742278 13.656155299579636 15 12.074880423218474 24.17538764262746 51.151742293592285 12.597989640561783 16 13.654900841024856 18.5303838822386 49.32142752604644 18.4932877506901 17 14.039840408977383 19.057196739124592 29.059293476994725 37.84366937490331 18 19.862977284145018 23.438184165268343 37.47324568451323 19.225592866073406 19 30.546722906234002 24.522155828841676 25.06868160587421 19.862439659050114 20 33.51154609627432 22.989924308360248 25.302608258279875 18.195921337085558 21 21.521729910294265 30.405805395247036 27.711108947336037 20.361355747122662 22 22.246388802105578 24.863368555741864 24.180166532359955 28.710076109792602 23 17.186440617217503 33.19470570700985 25.0333775579754 24.585476117797242 24 18.14156146637842 23.722109951500244 42.299088008630676 15.837240573490662 25 15.64052952487681 25.74656711442872 39.04090072513678 19.572002635557688 26 13.98273267667406 39.102548402685976 27.76074966443234 19.153969256207628 27 15.430318112768656 39.78162863367361 27.884881325233913 16.90317192832382 28 12.836038085361723 31.27287520108672 39.78324150895833 16.10784520459323 29 13.493135423579877 26.409040703595938 38.48983500285838 21.607988869965812 30 16.54403836492677 36.13067635029023 29.98382943186767 17.34145585291533 31 29.951332981686697 29.709282216735794 24.25573272625504 16.083652075322473 32 31.583025144725692 27.13823954065312 25.42799437763623 15.850740936984964 33 29.716689495821157 29.319145606199175 22.759522087132304 18.204642810847364 34 19.553066284992674 28.657508322735147 26.131566418502906 25.657858973769272 35 19.454561420381605 26.74003855369292 32.89996768275819 20.905432343167295 36 32.21264386698199 25.793041817077246 25.267244474259403 16.72706984168136 37 19.705214186851006 36.288797864314176 28.20255802020156 15.803429928633255 38 18.515509587946205 36.87576499570796 24.29294833004685 20.315777086298983 39 20.03071631375562 34.874127031252144 26.27720308310071 18.817953571891525 40 25.652900875671808 26.36895776596463 25.104105126016336 22.87403623234723 41 16.3008526136644 24.971789616547863 27.605794164856164 31.121563604931573 42 20.91504985875394 24.691388261493678 24.758770606721868 29.634791273030515 43 20.535426805628816 25.484743693209616 26.58538173472503 27.394447766436542 44 17.566242878707598 30.82575033049009 29.951034301078415 21.656972489723895 45 16.16716317339783 41.74993384224527 21.643770806837875 20.439132177519028 46 21.39574642972135 36.523321877936404 24.378609928501835 17.702321763840413 47 20.184596563141977 29.17542049749437 25.629723260469206 25.010259678894453 48 21.578001336894403 25.43139933657063 33.138016127558124 19.852583198976838 49 21.046230381910945 24.978002173200107 33.72665587035828 20.24911157453067 50 19.425230984648415 36.56483848248746 25.582830404969087 18.427100127895034 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2167.0 1 2612.0 2 3057.0 3 6752.5 4 10448.0 5 7822.5 6 5197.0 7 5931.0 8 6665.0 9 7809.0 10 8953.0 11 9477.5 12 10002.0 13 9853.0 14 9704.0 15 9158.0 16 8612.0 17 8322.0 18 8032.0 19 7639.5 20 7247.0 21 7950.0 22 8653.0 23 8239.5 24 7826.0 25 9029.5 26 10233.0 27 12088.0 28 13943.0 29 17056.0 30 20169.0 31 23991.5 32 27814.0 33 35759.5 34 43705.0 35 49404.5 36 55104.0 37 56232.0 38 57360.0 39 72900.0 40 88440.0 41 127679.0 42 166918.0 43 196267.0 44 225616.0 45 216152.0 46 206688.0 47 182525.5 48 158363.0 49 139130.5 50 119898.0 51 106342.5 52 92787.0 53 81088.5 54 69390.0 55 61239.5 56 53089.0 57 47432.0 58 41775.0 59 40020.5 60 38266.0 61 34769.0 62 31272.0 63 26428.0 64 21584.0 65 17014.0 66 12444.0 67 10333.5 68 8223.0 69 6848.0 70 5473.0 71 4630.5 72 3788.0 73 2987.5 74 2187.0 75 1792.0 76 1397.0 77 1105.0 78 813.0 79 587.5 80 362.0 81 271.5 82 181.0 83 164.0 84 147.0 85 83.0 86 19.0 87 13.0 88 7.0 89 6.5 90 6.0 91 4.5 92 3.0 93 1.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1674029.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.949100700194172 #Duplication Level Percentage of deduplicated Percentage of total 1 81.78551266783116 15.497619153597384 2 7.6729275774676085 2.9079015466146125 3 2.435217492460873 1.384355444745463 4 1.2062284694291256 0.9142777893861436 5 0.6929187767979516 0.6565093839299877 6 0.4742625606718066 0.5392109412301207 7 0.3650523171167687 0.4842189182519407 8 0.2648657797429785 0.40151746659081183 9 0.22575448638447165 0.385006004641797 >10 2.4035279780501435 10.696956679918522 >50 1.1370185630023903 15.997306821244539 >100 1.318240761780845 47.177897404421806 >500 0.01624312124929235 1.930342039121994 >1k 0.0019109554410932175 0.6367684494224216 >5k 3.1849257351553625E-4 0.3901119568824314 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6464 0.38613429038565045 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3926 0.2345240136222252 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04611628591858325 0.0 2 0.0 0.0 0.0 0.18667538017561225 0.0 3 0.0 0.0 0.0 0.2636155048687926 0.0 4 0.0 0.0 0.0 0.42836772839658094 0.0 5 0.0 0.0 0.0 0.698852887255836 0.0 6 0.0 0.0 0.0 1.0405435031292767 0.0 7 0.0 0.0 0.0 1.2199908125844894 0.0 8 0.0 0.0 0.0 1.6554074033365014 0.0 9 0.0 0.0 0.0 1.804747707476991 0.0 10 0.0 0.0 0.0 2.057132821474419 0.0 11 0.0 0.0 0.0 2.348047733940093 0.0 12 0.0 0.0 0.0 2.570564787109423 0.0 13 0.0 0.0 0.0 2.6607065946886226 0.0 14 0.0 0.0 0.0 2.693143308747937 0.0 15 0.0 0.0 0.0 2.745651359683733 0.0 16 0.0 0.0 0.0 2.8699024927286207 0.0 17 0.0 0.0 0.0 3.0225880196818573 0.0 18 0.0 0.0 0.0 3.2329786401549794 0.0 19 0.0 0.0 0.0 3.329571948873048 0.0 20 0.0 0.0 0.0 3.442712163289883 0.0 21 0.0 0.0 0.0 3.596891093284525 0.0 22 0.0 0.0 0.0 3.7492779396294806 0.0 23 0.0 0.0 0.0 3.930517332734379 0.0 24 0.0 0.0 0.0 4.046943033842305 0.0 25 0.0 0.0 0.0 4.151122830010711 0.0 26 0.0 0.0 0.0 4.255541570665741 0.0 27 0.0 0.0 0.0 4.353926963033496 0.0 28 0.0 0.0 0.0 4.473339470224231 0.0 29 0.0 0.0 0.0 4.5843889203831 0.0 30 0.0 0.0 0.0 4.736835502849711 0.0 31 0.0 0.0 0.0 4.8844434594621715 0.0 32 0.0 0.0 0.0 5.004990952964375 0.0 33 0.0 0.0 0.0 5.1392777544475035 0.0 34 0.0 0.0 0.0 5.272907458592414 0.0 35 0.0 0.0 0.0 5.454146851697312 0.0 36 0.0 0.0 0.0 5.6096997124900465 0.0 37 0.0 0.0 0.0 5.747451209029235 0.0 38 0.0 0.0 0.0 5.892968401383728 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 100 0.0 44.0 1 GATCGGA 20 7.857513E-4 44.0 9 GCGCGTA 25 4.4437147E-5 44.0 42 TAGCGCG 25 4.4437147E-5 44.0 1 TATATCG 20 7.857513E-4 44.0 28 TTGTACG 60 0.0 44.0 1 TCGATCT 20 7.857513E-4 44.0 40 CCGTCGA 25 4.4437147E-5 44.0 36 CGTTATC 20 7.857513E-4 44.0 44 CCCGTTA 25 4.4437147E-5 44.0 32 CCCCGAT 30 2.5284116E-6 44.0 40 ACGTGCG 35 1.4466059E-7 44.0 1 TCGTATA 20 7.857513E-4 44.0 13 GCGTGTC 25 4.4437147E-5 44.0 36 CGGTATA 35 1.4466059E-7 44.0 2 TGTCGGT 20 7.857513E-4 44.0 40 TACGTCC 20 7.857513E-4 44.0 21 AATCGCG 55 1.8189894E-12 44.0 1 TACCGAT 25 4.4437147E-5 44.0 38 TATAGCG 135 0.0 42.37037 1 >>END_MODULE