##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547142_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4765624 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.02417815589312 31.0 31.0 33.0 30.0 34.0 2 31.39955040515156 31.0 31.0 34.0 30.0 34.0 3 31.5660184269678 31.0 31.0 34.0 30.0 34.0 4 35.333954797944614 37.0 35.0 37.0 33.0 37.0 5 35.130684670045305 37.0 35.0 37.0 32.0 37.0 6 35.1998947042402 37.0 35.0 37.0 32.0 37.0 7 35.67504528263245 37.0 35.0 37.0 35.0 37.0 8 35.715329409118304 37.0 35.0 37.0 35.0 37.0 9 37.49876532433108 39.0 37.0 39.0 35.0 39.0 10 36.74882407844177 39.0 37.0 39.0 32.0 39.0 11 36.402072215516796 38.0 35.0 39.0 32.0 39.0 12 35.77747342215836 37.0 35.0 39.0 31.0 39.0 13 35.54539594395194 37.0 35.0 39.0 30.0 39.0 14 36.46570984198502 38.0 35.0 40.0 30.0 41.0 15 36.70853596506984 38.0 35.0 40.0 31.0 41.0 16 36.784002472708714 38.0 35.0 40.0 31.0 41.0 17 36.698759071215015 38.0 35.0 40.0 31.0 41.0 18 36.64685862753755 38.0 35.0 40.0 31.0 41.0 19 36.616468063783465 38.0 35.0 40.0 31.0 41.0 20 36.487987722069555 38.0 35.0 40.0 31.0 41.0 21 36.36508881103503 38.0 35.0 40.0 30.0 41.0 22 36.292458867925795 38.0 35.0 40.0 30.0 41.0 23 36.12279441265194 38.0 34.0 40.0 30.0 41.0 24 36.074474192676554 38.0 34.0 40.0 30.0 41.0 25 35.93638839320937 38.0 34.0 40.0 30.0 41.0 26 35.79987132849759 38.0 34.0 40.0 30.0 41.0 27 35.651187756314805 37.0 34.0 40.0 29.0 41.0 28 35.63160270302483 37.0 34.0 40.0 29.0 41.0 29 35.52113972902604 37.0 34.0 40.0 29.0 41.0 30 35.508740303473374 37.0 34.0 40.0 29.0 41.0 31 35.45398608870528 37.0 34.0 40.0 29.0 41.0 32 35.28027599323824 37.0 34.0 40.0 27.0 41.0 33 35.14607069294598 37.0 34.0 40.0 27.0 41.0 34 35.085212765421694 37.0 34.0 40.0 27.0 41.0 35 34.89999148065395 37.0 33.0 40.0 26.0 41.0 36 34.69967206812791 37.0 33.0 40.0 25.0 41.0 37 34.789030985239286 37.0 33.0 40.0 25.0 41.0 38 34.7744005821693 37.0 33.0 40.0 25.0 41.0 39 34.697134100382236 37.0 33.0 40.0 25.0 41.0 40 34.66775095979037 37.0 33.0 40.0 24.0 41.0 41 34.699377458230025 37.0 33.0 40.0 24.0 41.0 42 34.46074532946787 37.0 33.0 40.0 24.0 41.0 43 34.51657117724772 37.0 33.0 40.0 24.0 41.0 44 34.337778011861616 36.0 33.0 40.0 24.0 41.0 45 34.150773959506665 36.0 33.0 40.0 23.0 41.0 46 34.22667566723686 36.0 33.0 40.0 23.0 41.0 47 34.084239335709235 36.0 33.0 40.0 23.0 41.0 48 34.127851043221206 36.0 33.0 40.0 23.0 41.0 49 34.05450660815876 36.0 33.0 40.0 24.0 41.0 50 33.547755131332224 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 4.0 11 6.0 12 8.0 13 19.0 14 47.0 15 128.0 16 370.0 17 952.0 18 2375.0 19 4719.0 20 8327.0 21 13076.0 22 20288.0 23 29437.0 24 41522.0 25 57382.0 26 75706.0 27 92262.0 28 106612.0 29 125434.0 30 150588.0 31 182623.0 32 223489.0 33 282430.0 34 421632.0 35 545130.0 36 387161.0 37 467687.0 38 646260.0 39 879948.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.30874949429498 23.893932882661325 28.605886658284412 13.191430964759284 2 31.255718033986735 26.066680879565823 29.139478901398853 13.53812218504859 3 29.405110432547765 26.361059957730614 30.60950675084732 13.624322858874304 4 25.984991682096613 28.714980451668033 30.435867370149218 14.864160496086138 5 23.21729536362919 32.55281994550976 29.66916819287464 14.560716497986412 6 21.14858410986683 41.269495872943395 26.987001072682194 10.594918944507583 7 87.85214695913903 4.298555656090367 6.067935699501262 1.7813616852693372 8 88.8074678153375 3.2765069170375174 5.76929694831149 2.1467283193134836 9 83.74691331082771 5.389871294923813 7.901630510506075 2.961584883742402 10 43.04284181882582 28.686295855485035 15.257603201595426 13.013259124093718 11 36.47442601430579 25.863139853249017 23.647669224428952 14.014764908016241 12 32.720311128196435 24.730780271376844 26.5009786756152 16.047929924811523 13 21.791270146364884 34.21031537527929 27.847496990950187 16.150917487405636 14 18.388567793010946 36.35108434907999 28.921543117963143 16.33880473994591 15 17.607159104453057 26.071318257588093 40.09059464196084 16.230927995998005 16 19.568749024262093 24.35145953604397 38.58732875275095 17.49246268694299 17 20.058485520469095 24.04184635632186 28.97467362091512 26.92499450229393 18 22.55131751896499 25.206080043243023 33.26611583288988 18.976486604902107 19 27.42528575481406 26.059525468228294 27.64080842298931 18.874380353968338 20 29.360121570648463 25.902882812408194 26.651850838421158 18.08514477852218 21 24.15329031413305 28.569647962155635 28.882954257406794 18.39410746630452 22 23.477995746202385 24.954549498659567 27.854295680901387 23.71315907423666 23 20.584166942251425 30.130765666783617 27.95335930824589 21.33170808271907 24 19.928030411127693 26.423905872557295 35.689932734936704 17.958130981378304 25 19.47077654468754 27.703759255870796 33.072395136502585 19.753069062939083 26 19.045082029131965 32.99777741592707 28.371226936913192 19.585913618027774 27 18.655500308039407 33.00894069695805 29.4889609419459 18.84659805305664 28 17.566366964745857 29.852397083781685 34.78709188975043 17.794144061722033 29 18.506579621052772 27.218387350743573 34.38047147655795 19.894561551645705 30 19.62498510163622 30.65189364498752 30.662343483245845 19.060777770130414 31 25.77278442445313 27.910426840220715 27.36690934912196 18.9498793862042 32 26.093791704926783 27.633988749427147 28.307772497368656 17.964447048277414 33 25.49945190808171 27.903271428883187 26.76927512535609 19.82800153767901 34 20.330454102128073 28.037377686531713 29.230925477964693 22.401242733375522 35 20.221842931796548 27.68949040041766 31.606626960079097 20.482039707706694 36 26.32005798191381 27.450298219078974 27.431035264217236 18.798608534789988 37 20.56580628266099 32.33626908039744 28.536829594613423 18.56109504232814 38 20.08043437753377 32.27778775665055 26.956973525397725 20.68480434041796 39 20.458852817595346 31.118170464140686 28.347767259859356 20.075209458404608 40 23.581109210462262 26.92931712615179 28.15843213816281 21.331141525223142 41 18.737609177727826 27.434728379746282 28.675111590843088 25.152550851682804 42 21.013302770004515 27.675683184405653 27.62649760031425 23.684516445275584 43 21.078813603423182 27.637870717454838 28.039266211518154 23.244049467603823 44 19.50642769970942 29.983334816175173 29.689879016892647 20.82035846722276 45 18.78129705574758 34.298593426590095 26.453618665677357 20.466490851984968 46 21.21178674607984 31.72440796840036 27.553096929174437 19.51070835634536 47 20.71330008410231 28.94838115638162 28.132832132791002 22.20548662672506 48 21.650847821817248 27.134641759400235 31.2908445987346 19.92366582004791 49 21.310430701205128 26.835289565437808 31.40675806568038 20.44752166767668 50 19.565475580952253 32.36484875852564 27.84430748208419 20.225368178437915 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4059.0 1 6203.0 2 8347.0 3 18680.0 4 29013.0 5 22432.5 6 15852.0 7 16533.0 8 17214.0 9 18393.0 10 19572.0 11 19754.5 12 19937.0 13 20209.0 14 20481.0 15 20729.5 16 20978.0 17 20647.0 18 20316.0 19 21646.0 20 22976.0 21 24490.0 22 26004.0 23 30895.5 24 35787.0 25 39151.5 26 42516.0 27 54344.5 28 66173.0 29 79678.5 30 93184.0 31 110874.0 32 128564.0 33 146056.0 34 163548.0 35 181802.0 36 200056.0 37 212508.5 38 224961.0 39 259942.0 40 294923.0 41 341413.5 42 387904.0 43 416679.5 44 445455.0 45 437940.5 46 430426.0 47 413181.5 48 395937.0 49 366462.5 50 336988.0 51 305643.5 52 274299.0 53 244941.0 54 215583.0 55 195548.5 56 175514.0 57 163150.5 58 150787.0 59 142523.0 60 134259.0 61 119983.5 62 105708.0 63 92716.0 64 79724.0 65 66624.5 66 53525.0 67 46507.0 68 39489.0 69 32104.5 70 24720.0 71 21072.0 72 17424.0 73 13918.5 74 10413.0 75 8437.5 76 6462.0 77 4847.0 78 3232.0 79 2609.0 80 1986.0 81 1379.5 82 773.0 83 561.5 84 350.0 85 217.0 86 84.0 87 93.0 88 102.0 89 55.0 90 8.0 91 7.0 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4765624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.456002335397336 #Duplication Level Percentage of deduplicated Percentage of total 1 81.77056291205668 13.456165742475592 2 7.622566851225197 2.5087395581096827 3 2.328362167046312 1.149465997756947 4 1.0641373384076096 0.700457861040765 5 0.6305073776307994 0.5187815439388841 6 0.4346335732885986 0.429139865824756 7 0.31924504344242616 0.3677448026316812 8 0.2490403272082748 0.3278566564917989 9 0.2092727704837862 0.3099413879834631 >10 2.4252115368808034 9.553500858281295 >50 1.1732592976992382 14.266022672389447 >100 1.7571164438077669 54.101660059184155 >500 0.014008959426149045 1.4571936848601053 >1k 0.0018159762219082094 0.406631896766886 >5k 1.2971258727915782E-4 0.14572577213792812 >10k+ 1.2971258727915782E-4 0.3009716401266715 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14100 0.29586891454298536 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6827 0.1432551120273022 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.023942300105925268 0.0 2 0.0 0.0 0.0 0.09939936511986677 0.0 3 0.0 0.0 0.0 0.14604593228504809 0.0 4 0.0 0.0 0.0 0.24129054243473677 0.0 5 0.0 0.0 0.0 0.3976813949233091 0.0 6 0.0 0.0 0.0 0.7196119542792297 0.0 7 0.0 0.0 0.0 0.874177232614239 0.0 8 0.0 0.0 0.0 1.2286323889589275 0.0 9 0.0 0.0 0.0 1.3832606181268183 0.0 10 0.0 2.0983610960495414E-5 0.0 1.6042390251517955 0.0 11 0.0 2.0983610960495414E-5 0.0 1.8017787387338993 0.0 12 0.0 2.0983610960495414E-5 0.0 1.9753132013771963 0.0 13 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.062626006583818 0.0 14 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.1001866702031045 0.0 15 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.1428673348967524 0.0 16 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.22663390985105 0.0 17 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.319948027792373 0.0 18 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.454557892103951 0.0 19 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.5211598732925635 0.0 20 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.590804478070448 0.0 21 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.686909416269517 0.0 22 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.7893933722005766 0.0 23 2.0983610960495414E-5 2.0983610960495414E-5 0.0 2.9102379877220694 0.0 24 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.003782925383958 0.0 25 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.0874235986724927 0.0 26 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.1645803361742346 0.0 27 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.2432059264432107 0.0 28 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.327413157227679 0.0 29 2.0983610960495414E-5 2.0983610960495414E-5 0.0 3.416992192418034 0.0 30 4.196722192099083E-5 2.0983610960495414E-5 0.0 3.5354446762900302 0.0 31 4.196722192099083E-5 2.0983610960495414E-5 0.0 3.6396912555417718 0.0 32 4.196722192099083E-5 2.0983610960495414E-5 0.0 3.7475470158787183 0.0 33 4.196722192099083E-5 2.0983610960495414E-5 0.0 3.851940480407183 0.0 34 4.196722192099083E-5 2.0983610960495414E-5 0.0 3.954990993834176 0.0 35 4.196722192099083E-5 2.0983610960495414E-5 0.0 4.08093462681907 0.0 36 4.196722192099083E-5 2.0983610960495414E-5 0.0 4.190469076032855 0.0 37 4.196722192099083E-5 2.0983610960495414E-5 0.0 4.304389099937385 0.0 38 4.196722192099083E-5 2.0983610960495414E-5 0.0 4.4230933871409075 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGGCG 2400 0.0 38.866665 5 AGGGCGA 5740 0.0 38.86411 6 CGTAAGG 800 0.0 38.775 2 CGTTTTT 12245 0.0 38.430378 1 GGGCGAT 10095 0.0 37.941555 7 TATACGG 395 0.0 37.316456 2 GGCGATA 2430 0.0 36.395065 8 GCGATGT 1125 0.0 36.373333 9 AAGGGCG 2165 0.0 35.972286 5 CGGGATT 1820 0.0 35.9011 6 TACGGGT 420 0.0 35.61905 4 GCGATAT 635 0.0 35.338585 9 TTACGGG 1505 0.0 35.229233 3 CGACGGT 250 0.0 35.2 28 TATAGCG 225 0.0 35.2 1 CGCGTAG 25 0.0023534852 35.2 1 TACGGGA 1595 0.0 35.172413 4 GGCGATT 3205 0.0 35.076447 8 TAGGGAC 3650 0.0 34.9589 5 TAGTAGG 2645 0.0 34.767487 2 >>END_MODULE