##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547141_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2719365 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07954136351685 31.0 31.0 33.0 30.0 34.0 2 31.468639185986433 31.0 31.0 34.0 30.0 34.0 3 31.540704907211794 31.0 31.0 34.0 30.0 34.0 4 35.33825139324806 37.0 35.0 37.0 33.0 37.0 5 35.17467680874027 37.0 35.0 37.0 32.0 37.0 6 35.239204373079744 37.0 35.0 37.0 32.0 37.0 7 35.75602723429918 37.0 35.0 37.0 35.0 37.0 8 35.80924259891555 37.0 35.0 37.0 35.0 37.0 9 37.59862762078647 39.0 37.0 39.0 35.0 39.0 10 36.903185486317575 39.0 37.0 39.0 32.0 39.0 11 36.531987798622104 39.0 35.0 39.0 32.0 39.0 12 36.271804263127606 38.0 35.0 39.0 32.0 39.0 13 36.21961634425684 38.0 35.0 39.0 32.0 39.0 14 37.27066245244754 39.0 36.0 41.0 32.0 41.0 15 37.400850933949656 39.0 36.0 41.0 32.0 41.0 16 37.39061986897676 39.0 36.0 41.0 32.0 41.0 17 37.25857507175388 39.0 35.0 41.0 32.0 41.0 18 37.07916075995683 39.0 36.0 40.0 32.0 41.0 19 36.97474888439029 38.0 35.0 40.0 31.0 41.0 20 36.76934835889996 38.0 35.0 40.0 31.0 41.0 21 36.6649754630217 38.0 35.0 40.0 31.0 41.0 22 36.59927850803405 38.0 35.0 40.0 31.0 41.0 23 36.4070027377715 38.0 35.0 40.0 30.0 41.0 24 36.35260842145133 38.0 35.0 40.0 30.0 41.0 25 36.22862285864531 38.0 35.0 40.0 30.0 41.0 26 36.126971554020884 38.0 35.0 40.0 30.0 41.0 27 35.97284439565855 38.0 35.0 40.0 30.0 41.0 28 35.911942677794265 38.0 34.0 40.0 30.0 41.0 29 35.77606169087269 38.0 34.0 40.0 29.0 41.0 30 35.6832282536548 38.0 34.0 40.0 29.0 41.0 31 35.540822949475334 38.0 34.0 40.0 27.0 41.0 32 35.224215212007216 38.0 34.0 40.0 26.0 41.0 33 34.89107346751907 38.0 34.0 40.0 24.0 41.0 34 34.671678130740084 38.0 34.0 40.0 23.0 41.0 35 34.37955956629581 38.0 33.0 40.0 22.0 41.0 36 34.19898285077583 38.0 33.0 40.0 21.0 41.0 37 34.277430944356496 38.0 33.0 40.0 21.0 41.0 38 34.20205967201902 38.0 33.0 40.0 21.0 41.0 39 34.114296168406966 38.0 33.0 40.0 20.0 41.0 40 34.1369937467019 38.0 33.0 40.0 20.0 41.0 41 34.13175134636211 38.0 33.0 40.0 20.0 41.0 42 33.89442057244982 38.0 33.0 40.0 18.0 41.0 43 33.945558981600485 38.0 33.0 40.0 18.0 41.0 44 33.7541120813131 37.0 33.0 40.0 18.0 41.0 45 33.578967148580645 37.0 32.0 40.0 18.0 41.0 46 33.64651490329544 37.0 33.0 40.0 18.0 41.0 47 33.52210203485005 37.0 32.0 40.0 18.0 41.0 48 33.55040349493356 37.0 32.0 40.0 18.0 41.0 49 33.460318493471824 37.0 32.0 40.0 18.0 41.0 50 33.01521678774272 36.0 31.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 8.0 14 16.0 15 69.0 16 213.0 17 632.0 18 1545.0 19 3147.0 20 5720.0 21 9073.0 22 13668.0 23 19907.0 24 28925.0 25 42509.0 26 58603.0 27 69418.0 28 71208.0 29 73350.0 30 81015.0 31 93967.0 32 112961.0 33 139116.0 34 192010.0 35 239933.0 36 226161.0 37 277395.0 38 393972.0 39 564819.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.56918251135835 21.877055856790093 27.827709777834166 20.726051854017392 2 35.54671770799433 23.210565701919382 28.796612444449348 12.44610414563694 3 26.765219086073404 24.33549744149829 36.52095250177891 12.378330970649397 4 24.134384313985066 27.107651970220992 35.30640425246335 13.451559463330593 5 21.65303296909389 30.812965526878518 34.307604900408734 13.22639660361886 6 19.70842457706119 39.2816337637647 31.174263109218515 9.835678549955597 7 84.48501764198627 3.0695769049024313 11.255715948392364 1.1896895047189324 8 85.59965286013463 2.403428741636375 10.830432840019636 1.1664855582093614 9 80.43392483171623 5.818122980916501 11.911346950482924 1.836605236884346 10 32.5966907715588 41.92228700450289 17.233287918319164 8.247734305619142 11 22.384674363316435 23.23568185955177 39.04470345098947 15.334940326142316 12 23.25120018827925 23.37041919712874 37.11528242806685 16.263098186525163 13 19.827349399584094 27.16950464538596 36.85235339867947 16.15079255635047 14 16.52378404517231 30.592399328519708 35.99656537463709 16.887251251670886 15 16.321383852480267 28.36710040763193 40.07299498228446 15.238520757603338 16 20.066265470063783 27.026052037883847 38.02236919280788 14.885313299244492 17 20.21876430710846 25.90093643185082 34.49422935133754 19.386069909703185 18 20.190522419756082 27.094965184886917 36.05606455918937 16.658447836167632 19 23.045637492576393 27.265960987215763 33.35602245377138 16.332379066436467 20 24.192522886776878 27.70018000525858 32.93871914950733 15.168577958457213 21 23.106644382052426 26.262822386843986 34.94609954897559 15.684433682127995 22 21.98248488158081 24.18469017583149 35.05196985325618 18.780855089331517 23 19.000869688327974 27.543452239769213 35.09194242038123 18.363735651521587 24 18.917504638031303 26.896242321277207 37.7393251733401 16.446927867351384 25 19.47447290084266 28.61068668604619 34.92171885715967 16.993121555951483 26 19.049962031577223 31.41292176666244 32.850573571403615 16.68654263035672 27 18.000820044385364 30.67870624208225 34.49996598470599 16.8205077288264 28 17.647539039444872 28.988569022547544 37.00510964875991 16.35878228924767 29 18.504797995120185 26.9808944367527 36.63517034307642 17.8791372250507 30 18.96942852467396 28.021983073254237 35.54995375758679 17.45863464448502 31 21.996973558165234 27.627368889428233 33.22014514417888 17.155512408227654 32 22.023744513884676 28.32072928790361 32.72852301916072 16.927003179050992 33 21.460892524541574 28.84000492762097 32.13150864264268 17.567593905194776 34 19.993344034360963 29.49107604164943 32.329238627400144 18.18634129658946 35 19.534744324502228 29.13665506469341 32.5099793517972 18.818621259007156 36 21.428384935453682 29.65673971680889 31.216920126573665 17.697955221163763 37 20.492467910707095 30.476379595971853 31.655625486096937 17.37552700722411 38 20.079319988306093 30.892616474802022 30.29523436537574 18.732829171516144 39 20.083070863970082 30.802264499248906 30.4689146179347 18.64575001884631 40 21.03329269884697 29.605404202819408 30.757364311153523 18.6039387871801 41 19.00105355478209 29.29209576500396 31.258142985586705 20.448707694627238 42 20.399063752015635 30.043741829434445 29.434555493653846 20.12263892489607 43 20.600287199401333 29.444888788375227 30.274383909478868 19.680440102744576 44 19.74685266597165 30.724305122703278 30.504621483324236 19.024220728000838 45 19.25692211233137 31.654081007882358 29.86605328817573 19.22294359161054 46 20.441242716590086 31.06559803483534 29.594813495062265 18.89834575351231 47 19.79969588488489 30.397795073482232 30.559229820196993 19.243279221435884 48 20.341145818968766 28.999968742702798 31.49202111522359 19.166864323104843 49 20.323752052409294 29.012508434873585 31.54799006385682 19.115749448860303 50 19.56703127384518 31.092699950172193 30.389852042664373 18.950416733318256 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2449.0 1 2939.5 2 3430.0 3 29986.0 4 56542.0 5 41379.0 6 26216.0 7 26341.0 8 26466.0 9 27261.0 10 28056.0 11 27850.5 12 27645.0 13 26946.0 14 26247.0 15 25343.0 16 24439.0 17 23917.5 18 23396.0 19 23032.5 20 22669.0 21 23880.5 22 25092.0 23 28713.5 24 32335.0 25 37410.5 26 42486.0 27 48805.0 28 55124.0 29 65875.0 30 76626.0 31 87335.0 32 98044.0 33 107448.0 34 116852.0 35 127563.5 36 138275.0 37 142690.5 38 147106.0 39 157161.0 40 167216.0 41 183534.0 42 199852.0 43 207573.5 44 215295.0 45 213366.0 46 211437.0 47 195515.0 48 179593.0 49 167803.0 50 156013.0 51 143727.0 52 131441.0 53 118799.0 54 106157.0 55 94525.0 56 82893.0 57 76216.5 58 69540.0 59 64912.0 60 60284.0 61 54397.0 62 48510.0 63 42115.0 64 35720.0 65 27563.0 66 19406.0 67 16521.0 68 13636.0 69 11385.5 70 9135.0 71 7349.5 72 5564.0 73 4630.0 74 3696.0 75 2802.5 76 1909.0 77 1524.5 78 1140.0 79 990.0 80 840.0 81 607.0 82 374.0 83 271.5 84 169.0 85 99.0 86 29.0 87 21.5 88 14.0 89 7.5 90 1.0 91 2.5 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2719365.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.375495372656285 #Duplication Level Percentage of deduplicated Percentage of total 1 78.81668264837015 17.635623178867252 2 5.662493477191385 2.534021931931844 3 2.1817133461319758 1.4645075064251545 4 1.302640525139503 1.1658890816997403 5 0.9259178891541068 1.0358935722113696 6 0.7342505217437655 0.9857531490988851 7 0.5739791080324678 0.8990146813047304 8 0.48780639736631765 0.8731927829617739 9 0.4447038961848374 0.8955422974157445 >10 6.9376714193297095 38.32151280187488 >50 1.6955682584548621 25.77359908359736 >100 0.2350690087985813 6.930021607047044 >500 0.0010023360682505152 0.14604213664107318 >1k 3.341120227501717E-4 0.11763363296889104 >5k 0.0 0.0 >10k+ 1.6705601137508586E-4 1.2217525559543068 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32685 1.2019350105631277 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.677329082340914E-5 0.0 0.0 0.012833878497369791 0.0 2 3.677329082340914E-5 0.0 0.0 0.049496849448308705 0.0 3 3.677329082340914E-5 0.0 0.0 0.08483598192960488 0.0 4 3.677329082340914E-5 0.0 0.0 0.12337439071253767 0.0 5 3.677329082340914E-5 0.0 0.0 0.20968130427507892 0.0 6 3.677329082340914E-5 0.0 0.0 0.42671726671483967 0.0 7 3.677329082340914E-5 0.0 0.0 0.5455317693652746 0.0 8 3.677329082340914E-5 0.0 0.0 0.7846684795899043 0.0 9 3.677329082340914E-5 0.0 0.0 0.9194425904576987 0.0 10 3.677329082340914E-5 0.0 0.0 1.0728239864821383 0.0 11 3.677329082340914E-5 0.0 0.0 1.1973383492102017 0.0 12 3.677329082340914E-5 0.0 0.0 1.3058931037209054 0.0 13 3.677329082340914E-5 0.0 0.0 1.3774539276632596 0.0 14 3.677329082340914E-5 0.0 0.0 1.4257004852235724 0.0 15 3.677329082340914E-5 0.0 0.0 1.4609292978323984 0.0 16 3.677329082340914E-5 0.0 0.0 1.5077416970505981 0.0 17 3.677329082340914E-5 0.0 0.0 1.5647770711177058 0.0 18 3.677329082340914E-5 0.0 0.0 1.6440235128421525 0.0 19 3.677329082340914E-5 0.0 0.0 1.6959841727756295 0.0 20 3.677329082340914E-5 0.0 0.0 1.7532034132968541 0.0 21 3.677329082340914E-5 0.0 0.0 1.8142470760637135 0.0 22 3.677329082340914E-5 0.0 0.0 1.8855137136794804 0.0 23 3.677329082340914E-5 0.0 0.0 1.9667091398175678 0.0 24 3.677329082340914E-5 0.0 0.0 2.0340042620244065 0.0 25 3.677329082340914E-5 0.0 0.0 2.0905615833108095 0.0 26 3.677329082340914E-5 0.0 0.0 2.145059600311102 0.0 27 3.677329082340914E-5 0.0 0.0 2.206728409021959 0.0 28 3.677329082340914E-5 0.0 0.0 2.2714861741619825 0.0 29 7.354658164681828E-5 0.0 0.0 2.3483791252737314 0.0 30 7.354658164681828E-5 0.0 0.0 2.4403858989139007 0.0 31 7.354658164681828E-5 0.0 0.0 2.5246335081903313 0.0 32 7.354658164681828E-5 0.0 0.0 2.6164196420855603 0.0 33 7.354658164681828E-5 0.0 0.0 2.6993801861831717 0.0 34 7.354658164681828E-5 0.0 0.0 2.7866064320162978 0.0 35 7.354658164681828E-5 0.0 0.0 2.8824008546112787 0.0 36 7.354658164681828E-5 0.0 0.0 2.980916500727192 0.0 37 7.354658164681828E-5 0.0 0.0 3.0777773487560514 0.0 38 7.354658164681828E-5 0.0 0.0 3.182360587857827 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGAC 20 7.858382E-4 44.0 35 CGTTTTT 25145 0.0 42.74011 1 AGGGCGC 220 0.0 41.0 6 CGAACGC 45 2.3530447E-8 39.11111 31 ACGGGAT 2535 0.0 38.358974 5 ACGGGAC 1050 0.0 37.923813 5 TCGATAG 130 0.0 37.23077 1 GTTTTTT 29770 0.0 36.94995 2 AAGGGAT 7370 0.0 36.925373 5 AGGGATT 9410 0.0 36.82253 6 TACGGGA 1255 0.0 36.81275 4 AGTACGG 305 0.0 36.786884 2 TAGGGAC 3720 0.0 36.430107 5 TGGGCGA 1380 0.0 36.347828 6 TAGGGAT 7240 0.0 36.312157 5 AAGGGAC 3845 0.0 36.275684 5 GGCGATA 1105 0.0 36.235294 8 TTAGGGA 4680 0.0 36.196583 4 ATAGGGA 4890 0.0 36.0818 4 GAGGGAT 6765 0.0 36.065037 5 >>END_MODULE