SRR1547138_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547138_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	760603
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3940	0.5180100525504107	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	1200	0.15776955915240934	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1111	0.14606831684860563	No Hit
GAGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	819	0.10767772412151938	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	805	0.10583707926474127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.031781E-4	45.0	1
ATTCGCG	20	7.031781E-4	45.0	1
TTACGCG	25	3.8895574E-5	45.0	1
TAATGCG	40	6.8102963E-9	45.0	1
AATACGG	75	0.0	45.0	2
GCGCGAC	280	0.0	43.392857	9
CGGGTAC	75	0.0	42.0	6
AATCGTT	75	0.0	42.0	22
CTACGAA	65	0.0	41.53846	11
CGTTTTT	2325	0.0	41.516125	1
TACGCGG	60	3.6379788E-12	41.249996	2
GCGTAAG	60	3.6379788E-12	41.249996	1
AGTACGG	85	0.0	39.705883	2
TCGTTGA	80	0.0	39.375	24
TAATCGT	80	0.0	39.375	21
CGGTCTA	155	0.0	39.19355	31
CGCGACC	315	0.0	38.57143	10
TACGGGA	240	0.0	38.437496	4
TAGGGAT	460	0.0	38.152176	5
ACGGGAT	130	0.0	38.07692	5