SRR1547137_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547137_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1101681
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4194	0.3806909622658465	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3345	0.30362691196453423	No Hit
GAGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCT	1973	0.17908995435157726	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTT	1844	0.16738057568388673	No Hit
AAGAGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTT	1831	0.16620056077939077	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1706	0.1548542636207759	No Hit
AAGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCT	1634	0.14831879645741372	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTT	1477	0.13406784722619344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATT	30	2.1654196E-6	45.000004	6
AGGTACA	35	1.2118653E-7	45.000004	17
GTACCCG	35	1.2118653E-7	45.000004	25
TACCCCG	30	2.1654196E-6	45.000004	25
GCCCACG	30	2.1654196E-6	45.000004	20
CACGGTA	30	2.1654196E-6	45.000004	23
CTATCGA	30	2.1654196E-6	45.000004	30
CGCATCA	30	2.1654196E-6	45.000004	36
GGCGTAG	45	3.8562575E-10	45.000004	1
ACATTCG	30	2.1654196E-6	45.000004	14
TCGATTG	30	2.1654196E-6	45.000004	1
CGTTCGA	30	2.1654196E-6	45.000004	14
TGCATAA	30	2.1654196E-6	45.000004	22
TAACCGG	45	3.8562575E-10	45.000004	2
GTACTAA	35	1.2118653E-7	45.000004	9
TTGCGAT	30	2.1654196E-6	45.000004	11
ACTCGAT	30	2.1654196E-6	45.000004	19
ACGTAAG	30	2.1654196E-6	45.000004	1
CGACTCC	30	2.1654196E-6	45.000004	28
TTCGAAT	30	2.1654196E-6	45.000004	16