SRR1547135_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547135_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	517143
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3426	0.6624860048381203	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1134	0.21928170738074382	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	659	0.12743090402461216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	35	1.2101918E-7	45.000004	5
TATAGCG	35	1.2101918E-7	45.000004	1
GCGACGT	20	7.0296845E-4	45.0	17
CATATCC	25	3.8878185E-5	45.0	29
AGTTTAG	50	2.1827873E-11	45.0	1
CGAGTCT	20	7.0296845E-4	45.0	17
ACCATCG	20	7.0296845E-4	45.0	17
CGTGAAC	20	7.0296845E-4	45.0	34
CGACAGG	25	3.8878185E-5	45.0	2
TAACGCC	25	3.8878185E-5	45.0	12
TCTAGCG	20	7.0296845E-4	45.0	1
CTAACGC	20	7.0296845E-4	45.0	33
CTAAACG	20	7.0296845E-4	45.0	23
TGATTCG	20	7.0296845E-4	45.0	15
ATTGGGC	55	1.8189894E-12	45.0	4
TTCGGTA	20	7.0296845E-4	45.0	35
ATAACTC	20	7.0296845E-4	45.0	11
CGCACGG	25	3.8878185E-5	45.0	2
CCACGTT	20	7.0296845E-4	45.0	16
TCGACAC	20	7.0296845E-4	45.0	38