##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547135_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 517143 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.630560599292654 31.0 31.0 33.0 30.0 34.0 2 31.996668232964577 33.0 31.0 34.0 30.0 34.0 3 32.08441378883597 33.0 31.0 34.0 30.0 34.0 4 35.822704745109185 37.0 35.0 37.0 35.0 37.0 5 35.765575479122795 37.0 35.0 37.0 35.0 37.0 6 35.80873762189569 37.0 35.0 37.0 35.0 37.0 7 36.11278311801571 37.0 35.0 37.0 35.0 37.0 8 34.77885033733416 37.0 35.0 37.0 35.0 37.0 9 37.137368194097185 39.0 37.0 39.0 34.0 39.0 10 37.1533212283643 39.0 37.0 39.0 32.0 39.0 11 37.05079639480763 39.0 37.0 39.0 33.0 39.0 12 36.356195481713954 38.0 35.0 39.0 33.0 39.0 13 36.02169612660328 38.0 35.0 39.0 32.0 39.0 14 37.081194176465694 39.0 35.0 41.0 32.0 41.0 15 37.36526453998217 39.0 35.0 41.0 33.0 41.0 16 37.47881533734383 39.0 35.0 41.0 33.0 41.0 17 37.390938289796054 39.0 35.0 41.0 33.0 41.0 18 37.332010681765006 39.0 35.0 41.0 33.0 41.0 19 37.23813142593055 38.0 35.0 41.0 33.0 41.0 20 37.084088927047254 38.0 35.0 41.0 33.0 41.0 21 36.96168951334544 38.0 35.0 41.0 32.0 41.0 22 36.872576830779884 38.0 35.0 41.0 32.0 41.0 23 36.81832877946719 38.0 35.0 41.0 32.0 41.0 24 36.67337660956447 38.0 35.0 41.0 32.0 41.0 25 36.58307856821034 38.0 35.0 40.0 32.0 41.0 26 36.47322887479865 38.0 35.0 40.0 32.0 41.0 27 36.34700653397609 37.0 35.0 40.0 31.0 41.0 28 36.38248608218616 37.0 35.0 40.0 31.0 41.0 29 36.39733303941076 37.0 35.0 40.0 31.0 41.0 30 36.34475570586859 37.0 35.0 40.0 31.0 41.0 31 36.21231458223354 37.0 35.0 40.0 31.0 41.0 32 36.04093838648111 37.0 35.0 40.0 31.0 41.0 33 35.86985417959829 37.0 35.0 40.0 30.0 41.0 34 35.69574179675641 37.0 35.0 40.0 30.0 41.0 35 35.53745095650526 37.0 35.0 40.0 30.0 41.0 36 35.34905045606341 37.0 35.0 40.0 29.0 41.0 37 35.25964385092711 37.0 35.0 40.0 28.0 41.0 38 35.1643317225603 37.0 34.0 40.0 28.0 41.0 39 35.126912672123574 37.0 35.0 40.0 27.0 41.0 40 34.928596152321504 36.0 34.0 40.0 27.0 41.0 41 34.85679782961386 36.0 34.0 40.0 26.0 41.0 42 34.769518295713176 36.0 34.0 40.0 26.0 41.0 43 34.65103269308489 36.0 34.0 40.0 26.0 41.0 44 34.51424847672694 35.0 34.0 40.0 25.0 41.0 45 34.38976646691534 35.0 34.0 40.0 24.0 41.0 46 34.324943004159394 35.0 34.0 40.0 24.0 41.0 47 34.263296612349 35.0 34.0 40.0 24.0 41.0 48 34.236762365535256 35.0 34.0 40.0 24.0 41.0 49 34.20123254109598 35.0 34.0 40.0 24.0 41.0 50 34.0796336796592 35.0 34.0 40.0 24.0 41.0 51 33.70732079908265 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 7.0 15 10.0 16 31.0 17 98.0 18 199.0 19 373.0 20 678.0 21 1109.0 22 1701.0 23 2672.0 24 3962.0 25 5858.0 26 7646.0 27 8879.0 28 9362.0 29 10407.0 30 11638.0 31 14185.0 32 17890.0 33 24021.0 34 45010.0 35 82989.0 36 37074.0 37 46195.0 38 68423.0 39 116602.0 40 120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.55601255358769 23.269965947523218 27.669136003001103 14.504885495887985 2 30.78239481149315 25.969025975407188 29.963859126005765 13.284720087093898 3 29.30949466588545 25.569523323336096 31.97297459310094 13.14800741767751 4 25.31524162562386 28.69921859137608 30.99394171438074 14.99159806861932 5 23.408612318062897 32.73697990691163 29.955544211175635 13.898863563849845 6 21.442038275680034 40.70208820384304 27.31952283991082 10.53635068056611 7 85.6378216470106 4.908700301464005 7.855467443241038 1.5980106082843626 8 83.47052942803055 6.984335087200252 7.034417946293385 2.5107175384758182 9 81.50550234654631 6.003175137244438 9.565826086788373 2.925496429420876 10 49.75761056419598 24.70612577178846 14.302813728504496 11.233449935511068 11 44.33783305584722 22.17645796230443 20.734303664557 12.751405317291347 12 39.097696381851826 21.8258779486525 23.743142612391544 15.333283057104127 13 22.15112647758937 39.272502963396974 24.898142293330856 13.6782282656828 14 17.28052008825412 40.89043069325119 27.052091974560227 14.776957243934463 15 15.845713854775179 24.046733688747597 45.20896541188801 14.898587044589215 16 17.09469141030624 19.920408861765505 44.17791597295139 18.806983754976862 17 17.58217746348689 20.382950170455754 28.77946718799249 33.25540517806487 18 22.29364025037562 23.33223112369306 33.661482413955135 20.712646211976185 19 28.117561293491356 25.314854885399203 25.49236864851695 21.075215172592493 20 30.46391423648778 23.671208930605268 25.21256209597732 20.65231473692963 21 22.627783804479613 28.013721543170846 28.146180070116 21.212314582233542 22 23.368391334698526 24.622009772925477 25.517893503344336 26.49170538903166 23 20.93057432857063 29.878002796131824 24.29946842556121 24.89195444973634 24 21.360242718164997 24.940103607706185 36.311619803419944 17.388033870708874 25 18.759801447568663 25.706816103089476 33.96468675008653 21.568695699255333 26 18.63643131590295 33.4961509679141 26.798970497521964 21.068447218660992 27 19.786016633697063 31.531123886429867 28.84927379854315 19.83358568132992 28 16.93438758718575 29.414301266767605 36.53844294518151 17.11286820086514 29 17.714249250207388 24.89446826119661 35.48244876175449 21.90883372684151 30 19.442591314201294 29.808389555693495 31.770516085492794 18.97850304461242 31 28.399881657491257 27.056732857256115 24.902976546139076 19.640408939113552 32 28.071345836644795 27.49722997314089 26.748114157979515 17.683310032234797 33 26.899522955932888 27.52430178886691 25.109689196218454 20.46648605898175 34 19.673088488097104 29.20758861668823 28.567726914992562 22.551595980222107 35 21.69670671361693 26.6779208072042 29.987256909597537 21.638115569581334 36 30.162063491142682 24.73165062661585 26.586456744072724 18.51982913816875 37 22.185933097808537 30.715102012402756 28.41535126647755 18.683613623311153 38 22.199469005671546 31.107449970317685 24.433280543292668 22.259800480718102 39 22.73336388581108 29.814190659063357 26.747920787867187 20.70452466725838 40 24.791788731550074 26.128749688190695 26.36446785511938 22.714993725139855 41 18.57281254894681 24.443335789133762 28.01874916609139 28.965102495828038 42 23.411319499635496 26.556677746774106 25.06579418071984 24.96620857287056 43 24.392092709366654 25.93035195294145 26.053722084607163 23.623833253084737 44 21.279994121548583 30.28833417449332 27.14742343993828 21.284248264019816 45 19.245933909963007 33.86084699976602 23.932645322473668 22.960573767797303 46 23.67101556049294 29.850544240181147 26.576788238456288 19.901651960869625 47 23.264164844153356 27.099274281968434 27.384688567765593 22.25187230611262 48 25.022092535333552 23.413253200758785 29.850544240181147 21.714110023726512 49 22.91184449949047 23.662313905438147 30.490019201652153 22.93582239341923 50 20.98394447957335 30.467588268622027 27.54943990346964 20.999027348334987 51 20.347370069787274 31.661261972027077 24.89891577378017 23.092452184405474 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 998.0 1 1124.0 2 1250.0 3 3525.5 4 5801.0 5 4171.0 6 2541.0 7 2680.0 8 2819.0 9 3065.5 10 3312.0 11 3537.0 12 3762.0 13 3660.0 14 3558.0 15 3445.5 16 3333.0 17 3152.5 18 2972.0 19 2992.0 20 3012.0 21 2944.5 22 2877.0 23 2940.0 24 3003.0 25 3063.5 26 3295.0 27 3466.0 28 4357.5 29 5249.0 30 6184.0 31 7119.0 32 8000.5 33 8882.0 34 9467.0 35 10052.0 36 11522.0 37 12992.0 38 15132.5 39 17273.0 40 23713.5 41 30154.0 42 37217.5 43 44281.0 44 45403.5 45 46526.0 46 46289.5 47 46053.0 48 43936.0 49 41819.0 50 39734.0 51 37649.0 52 35005.0 53 32361.0 54 28686.5 55 25012.0 56 23122.0 57 21232.0 58 20311.0 59 19390.0 60 17843.5 61 16297.0 62 14787.0 63 13277.0 64 11808.5 65 10340.0 66 9187.0 67 8034.0 68 6706.5 69 5379.0 70 4574.5 71 3770.0 72 3478.5 73 3187.0 74 2762.5 75 1859.5 76 1381.0 77 1043.0 78 705.0 79 504.5 80 304.0 81 236.0 82 168.0 83 116.5 84 65.0 85 42.0 86 19.0 87 10.5 88 2.0 89 1.5 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 517143.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.502800255587417 #Duplication Level Percentage of deduplicated Percentage of total 1 78.69907732125685 20.857459265443 2 6.201953578637564 3.2873827377811393 3 2.3229621894144383 1.8469500872199864 4 1.2966994047336036 1.3746466126077521 5 0.8277949185287378 1.0969441689178698 6 0.6405425599899426 1.0185702913569643 7 0.5932071539297988 1.1005155497550871 8 0.49297315025416505 1.0452135146043058 9 0.41040465586497715 0.9789185356517325 >10 7.618404019691395 50.38626536298844 >50 0.8441353636018926 13.757588648160734 >100 0.04965502138834662 2.2395174408692893 >500 7.302209027698032E-4 0.12753560262122896 >1k 0.0014604418055396064 0.8824921820224645 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3426 0.6624860048381203 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1134 0.21928170738074382 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 659 0.12743090402461216 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0881767712218864 0.0 2 0.0 0.0 0.0 0.32486178871221305 0.0 3 0.0 0.0 0.0 0.44900540082723733 0.0 4 0.0 0.0 0.0 0.749115815161377 0.0 5 0.0 0.0 0.0 1.1012427897119366 0.0 6 0.0 0.0 0.0 1.615413918393945 0.0 7 0.0 0.0 0.0 1.7998890055555232 0.0 8 0.0 0.0 0.0 2.3163805755854763 0.0 9 0.0 0.0 0.0 2.5557727746484047 0.0 10 0.0 0.0 0.0 2.9309107925660793 0.0 11 0.0 0.0 0.0 3.3101095828426566 0.0 12 0.0 0.0 0.0 3.587982434258996 0.0 13 0.0 0.0 0.0 3.7198608508671684 0.0 14 0.0 0.0 0.0 3.7799989558013936 0.0 15 0.0 0.0 0.0 3.854446449047942 0.0 16 0.0 0.0 0.0 4.005468506776656 0.0 17 0.0 0.0 0.0 4.167899401132762 0.0 18 0.0 0.0 0.0 4.378672823571043 0.0 19 0.0 0.0 0.0 4.479612022206624 0.0 20 0.0 0.0 0.0 4.59447386892987 0.0 21 0.0 0.0 0.0 4.734473830255848 0.0 22 0.0 0.0 0.0 4.870993129559909 0.0 23 0.0 0.0 0.0 5.028203030883141 0.0 24 0.0 0.0 0.0 5.156987525694054 0.0 25 0.0 0.0 0.0 5.259086945003606 0.0 26 0.0 0.0 0.0 5.357125591954256 0.0 27 0.0 0.0 0.0 5.456711199803536 0.0 28 0.0 0.0 0.0 5.5574570283267875 0.0 29 0.0 0.0 0.0 5.660910038422641 0.0 30 0.0 0.0 0.0 5.799169668737661 0.0 31 0.0 0.0 0.0 5.91809228781981 0.0 32 0.0 0.0 0.0 6.0314071736444275 0.0 33 0.0 0.0 0.0 6.145302169806031 0.0 34 0.0 0.0 0.0 6.245467887992296 0.0 35 0.0 0.0 0.0 6.391849063025121 0.0 36 0.0 0.0 0.0 6.505744059186724 0.0 37 0.0 0.0 0.0 6.623893197819559 0.0 38 0.0 0.0 0.0 6.733147311285273 0.0 39 0.0 0.0 0.0 6.854390371715367 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGTA 35 1.2101918E-7 45.000004 5 TATAGCG 35 1.2101918E-7 45.000004 1 GCGACGT 20 7.0296845E-4 45.0 17 CATATCC 25 3.8878185E-5 45.0 29 AGTTTAG 50 2.1827873E-11 45.0 1 CGAGTCT 20 7.0296845E-4 45.0 17 ACCATCG 20 7.0296845E-4 45.0 17 CGTGAAC 20 7.0296845E-4 45.0 34 CGACAGG 25 3.8878185E-5 45.0 2 TAACGCC 25 3.8878185E-5 45.0 12 TCTAGCG 20 7.0296845E-4 45.0 1 CTAACGC 20 7.0296845E-4 45.0 33 CTAAACG 20 7.0296845E-4 45.0 23 TGATTCG 20 7.0296845E-4 45.0 15 ATTGGGC 55 1.8189894E-12 45.0 4 TTCGGTA 20 7.0296845E-4 45.0 35 ATAACTC 20 7.0296845E-4 45.0 11 CGCACGG 25 3.8878185E-5 45.0 2 CCACGTT 20 7.0296845E-4 45.0 16 TCGACAC 20 7.0296845E-4 45.0 38 >>END_MODULE