##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547129_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 609433 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.482983363224506 31.0 31.0 33.0 30.0 34.0 2 31.84787006939237 31.0 31.0 34.0 30.0 34.0 3 31.94345235653468 33.0 31.0 34.0 30.0 34.0 4 35.71072291785971 37.0 35.0 37.0 33.0 37.0 5 35.661426276555424 37.0 35.0 37.0 33.0 37.0 6 35.69520193360058 37.0 35.0 37.0 33.0 37.0 7 36.02394848982579 37.0 35.0 37.0 35.0 37.0 8 34.70037231328136 37.0 35.0 37.0 33.0 37.0 9 37.01283980355511 39.0 37.0 39.0 34.0 39.0 10 36.939952381968155 39.0 37.0 39.0 32.0 39.0 11 36.84590923038299 39.0 37.0 39.0 32.0 39.0 12 36.556254748266014 39.0 35.0 39.0 32.0 39.0 13 36.478754842616006 39.0 35.0 39.0 32.0 39.0 14 37.56018627150154 40.0 36.0 41.0 32.0 41.0 15 37.72409436312113 40.0 36.0 41.0 33.0 41.0 16 37.75059932757169 40.0 36.0 41.0 33.0 41.0 17 37.64156519256424 40.0 36.0 41.0 33.0 41.0 18 37.55455316663193 39.0 36.0 41.0 32.0 41.0 19 37.489842197583656 39.0 36.0 41.0 32.0 41.0 20 37.360840322069855 39.0 35.0 41.0 32.0 41.0 21 37.25388188693425 39.0 35.0 41.0 32.0 41.0 22 37.168089027013636 39.0 35.0 41.0 32.0 41.0 23 37.08322982181799 39.0 35.0 41.0 32.0 41.0 24 36.93328552933628 39.0 35.0 41.0 31.0 41.0 25 36.83509754148528 38.0 35.0 41.0 31.0 41.0 26 36.70898359622797 38.0 35.0 41.0 31.0 41.0 27 36.60327550362386 38.0 35.0 41.0 31.0 41.0 28 36.63090938626559 38.0 35.0 41.0 31.0 41.0 29 36.569089629212726 38.0 35.0 41.0 31.0 41.0 30 36.49840589531581 38.0 35.0 41.0 31.0 41.0 31 36.393395172233866 38.0 35.0 41.0 30.0 41.0 32 36.29314789320565 38.0 35.0 41.0 30.0 41.0 33 36.12987974067699 38.0 35.0 41.0 30.0 41.0 34 35.94717713021776 38.0 35.0 41.0 29.0 41.0 35 35.81975869373664 38.0 35.0 41.0 29.0 41.0 36 35.69331329284761 38.0 35.0 41.0 28.0 41.0 37 35.64947418338029 38.0 35.0 41.0 28.0 41.0 38 35.52737052309278 38.0 35.0 40.0 27.0 41.0 39 35.43652050348439 38.0 35.0 40.0 27.0 41.0 40 35.290358415117005 38.0 34.0 40.0 27.0 41.0 41 35.17297225453824 38.0 34.0 40.0 26.0 41.0 42 35.110775097508665 38.0 34.0 40.0 26.0 41.0 43 35.023790966357254 37.0 34.0 40.0 26.0 41.0 44 34.89678931071997 37.0 34.0 40.0 26.0 41.0 45 34.75986367656494 37.0 34.0 40.0 25.0 41.0 46 34.68165819704545 37.0 34.0 40.0 25.0 41.0 47 34.61626626716965 36.0 34.0 40.0 24.0 41.0 48 34.52107122522082 36.0 34.0 40.0 24.0 41.0 49 34.4378610938364 36.0 34.0 40.0 24.0 41.0 50 34.3365948348711 36.0 34.0 40.0 24.0 41.0 51 33.97170648783377 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 0.0 12 2.0 13 7.0 14 6.0 15 15.0 16 51.0 17 111.0 18 267.0 19 495.0 20 883.0 21 1336.0 22 2052.0 23 3041.0 24 4438.0 25 6648.0 26 8934.0 27 10391.0 28 11221.0 29 12389.0 30 14491.0 31 17336.0 32 20935.0 33 27560.0 34 45206.0 35 63333.0 36 50714.0 37 65868.0 38 92591.0 39 149017.0 40 92.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.50529754706424 23.69825723254238 26.121165082954157 14.675280137439225 2 34.19293014982779 25.34716695682708 27.035621635192054 13.42428125815307 3 30.155078573034277 25.40689460531346 30.468976901480556 13.9690499201717 4 26.15759238505299 27.78861663218106 30.226292307768038 15.827498674997909 5 23.49511759291013 31.54046466141479 29.416851401220477 15.5475663444546 6 22.922290063058615 40.08562056862691 26.749618087632278 10.242471280682208 7 86.42098475140007 3.8375014152499123 7.935080640529804 1.8064331928202115 8 83.71322196205325 6.123068491532293 7.764594303229395 2.399115243185059 9 80.66399423726645 5.540723918790088 10.113663027765153 3.6816188161783163 10 42.26239799945195 27.853430976005566 16.32829203538371 13.555878989158776 11 34.42199552698984 25.699789804621677 23.563705936501634 16.31450873188685 12 30.104375706599413 22.682394947434748 28.816129090482466 18.397100255483377 13 24.486695009951873 26.971299552206723 30.179527528046563 18.36247790979484 14 21.555609886566693 29.101476290256684 30.63011028283667 18.712803540339955 15 21.13242965182391 23.23635247845128 36.52148800606466 19.109729863660156 16 24.200855549338485 22.37981861828946 34.289577361252185 19.129748471119875 17 24.311121977313338 22.3474934898504 29.276885235948825 24.064499296887433 18 25.469903992727666 22.111536460939924 31.60757622248877 20.810983323843637 19 28.158140435453937 24.557088309953677 27.191832408156436 20.09293884643595 20 29.932576673727873 24.07795442649151 26.523670362451657 19.46579853732896 21 27.747923069476055 24.811423076859967 28.287276862263777 19.153376991400204 22 26.51841958016714 22.67730825209662 27.466842130308006 23.337430037428234 23 24.614354654244192 26.364998285291406 27.08451954521662 21.93612751524778 24 23.97457965026508 24.151629465421138 31.802675601747854 20.071115282565927 25 24.44321196915822 24.836364292711423 29.071940639906273 21.648483098224087 26 22.514698088222985 26.77751286851877 28.00275009722152 22.705038946036726 27 22.293837058380493 25.901780835629186 28.878482130111106 22.92589997587922 28 21.708210746710467 26.429484455223136 30.548723157426654 21.313581640639743 29 23.03288466492625 24.61960543652871 30.126035183523047 22.221474715021998 30 23.616870107132367 25.86978388108291 29.85922980869103 20.654116203093693 31 26.139870994842745 25.74261649762977 26.979339812579887 21.1381726949476 32 26.61112870487814 25.657783546345534 26.600627140309108 21.130460608467214 33 26.135112473397403 25.69519537012272 26.425546368509746 21.74414578797013 34 22.441843484025313 26.940287119338794 28.46711615550848 22.150753241127408 35 23.107216051641444 26.92272981607494 28.27037590678549 21.699678225498126 36 26.103771866636695 27.273219533566444 24.995692717657235 21.627315882139627 37 23.869399917628353 28.55900484548753 25.980706656843328 21.590888580040794 38 23.754703142100936 28.21983712729701 25.766737278749265 22.25872245185279 39 23.643452192447732 27.34886361585277 25.517981468020274 23.489702723679223 40 25.569668856133486 24.789927686882727 26.76290913028996 22.877494326693828 41 21.538380757195622 25.83270023119851 27.407114481821626 25.221804529784244 42 23.876947917162347 26.391744457553166 25.97332274425573 23.75798488102876 43 23.13494674558155 25.32222574097563 27.578913514693166 23.963913998749657 44 22.945426322499767 26.357450285757416 27.8119169785686 22.885206413174213 45 22.259378799638352 27.614848555952825 26.534664187859864 23.591108456548955 46 23.160052048379395 26.67085635336452 27.110281195800027 23.058810402456054 47 22.973813364225435 26.653463137047055 27.950898622161912 22.421824876565594 48 23.09244822646624 25.880613619544725 28.523397978120645 22.503540175868388 49 23.638693671002393 25.37801530274862 28.289902253406034 22.693388772842955 50 21.991260729235208 27.18723797365748 28.493205979984676 22.328295317122638 51 22.265285929708433 27.231541449183094 27.311287705129196 23.19188491597928 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 504.0 1 794.0 2 1084.0 3 4477.5 4 7871.0 5 5443.0 6 3015.0 7 3003.5 8 2992.0 9 3149.0 10 3306.0 11 3325.5 12 3345.0 13 3358.5 14 3372.0 15 3228.0 16 3084.0 17 3029.5 18 2975.0 19 3004.0 20 3033.0 21 3043.5 22 3054.0 23 3115.5 24 3177.0 25 3566.5 26 4228.5 27 4501.0 28 5374.5 29 6248.0 30 7208.5 31 8169.0 32 9745.0 33 11321.0 34 12765.0 35 14209.0 36 15463.0 37 16717.0 38 18996.5 39 21276.0 40 24538.5 41 27801.0 42 30763.5 43 33726.0 44 35814.5 45 37903.0 46 39745.0 47 41587.0 48 42528.5 49 43470.0 50 43365.5 51 43261.0 52 41580.5 53 39900.0 54 38160.5 55 36421.0 56 34995.0 57 33569.0 58 32264.0 59 30959.0 60 29066.5 61 27174.0 62 25177.0 63 23180.0 64 20962.5 65 18745.0 66 16167.0 67 13589.0 68 12113.0 69 10637.0 70 9111.5 71 7586.0 72 6305.5 73 5025.0 74 4158.5 75 2744.0 76 2196.0 77 1686.5 78 1177.0 79 849.0 80 521.0 81 399.0 82 277.0 83 213.5 84 150.0 85 105.5 86 61.0 87 35.0 88 9.0 89 7.5 90 6.0 91 4.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 609433.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.65465836304134 #Duplication Level Percentage of deduplicated Percentage of total 1 70.2476327844262 23.641600821722463 2 6.991508579532117 4.705936653728517 3 3.811101249474919 3.847839316141151 4 2.643869560430709 3.559141072509591 5 2.161602636285073 3.6373999120411815 6 1.7911898144165515 3.6169128760529072 7 1.5126023423582193 3.5634280549841377 8 1.3685340290581125 3.684603616491781 9 1.1959930174171924 3.62256627651827 >10 8.222850016683743 43.64592613793551 >50 0.03708096013106759 0.8447252362573001 >100 0.015533915730312951 0.8739002144592197 >500 0.0 0.0 >1k 5.010940558165468E-4 0.7560198111579857 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4483 0.7356017806715422 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03609912820605382 0.0 2 0.0 0.0 0.0 0.1096100801892907 0.0 3 0.0 0.0 0.0 0.18361329301170104 0.0 4 0.0 0.0 0.0 0.3211181540874879 0.0 5 0.0 0.0 0.0 0.5542857049093174 0.0 6 0.0 0.0 0.0 0.9983049818437794 0.0 7 0.0 0.0 0.0 1.2047263604038507 0.0 8 0.0 0.0 0.0 1.6818912005093258 0.0 9 0.0 0.0 0.0 1.9288420548280123 0.0 10 0.0 0.0 0.0 2.3016475970287136 0.0 11 0.0 0.0 0.0 2.6020907958709163 0.0 12 0.0 0.0 0.0 2.833945651121616 0.0 13 0.0 0.0 0.0 2.975552685857182 0.0 14 0.0 0.0 0.0 3.0434846816631196 0.0 15 0.0 0.0 0.0 3.11748789448553 0.0 16 0.0 0.0 0.0 3.2398967564933305 0.0 17 0.0 0.0 0.0 3.375432574212424 0.0 18 1.6408694639115373E-4 0.0 0.0 3.55412325883239 0.0 19 1.6408694639115373E-4 0.0 0.0 3.6522472527743 0.0 20 1.6408694639115373E-4 0.0 0.0 3.7492226380914717 0.0 21 1.6408694639115373E-4 0.0 0.0 3.87409280429514 0.0 22 1.6408694639115373E-4 0.0 0.0 4.013730795674012 0.0 23 1.6408694639115373E-4 0.0 0.0 4.167316177496132 0.0 24 1.6408694639115373E-4 0.0 0.0 4.298093473769881 0.0 25 1.6408694639115373E-4 0.0 0.0 4.421486857456029 0.0 26 3.2817389278230746E-4 0.0 0.0 4.531917372377276 0.0 27 3.2817389278230746E-4 0.0 0.0 4.648747278207777 0.0 28 3.2817389278230746E-4 0.0 0.0 4.757044662825939 0.0 29 3.2817389278230746E-4 0.0 0.0 4.89241639359864 0.0 30 3.2817389278230746E-4 0.0 0.0 5.065528122041307 0.0 31 3.2817389278230746E-4 0.0 0.0 5.211893678222216 0.0 32 3.2817389278230746E-4 0.0 0.0 5.359736016920646 0.0 33 3.2817389278230746E-4 0.0 0.0 5.49543592158613 0.0 34 3.2817389278230746E-4 0.0 0.0 5.649185390354641 0.0 35 3.2817389278230746E-4 0.0 0.0 5.825907031617914 0.0 36 3.2817389278230746E-4 0.0 0.0 5.971780326959649 0.0 37 3.2817389278230746E-4 0.0 0.0 6.122412143746729 0.0 38 3.2817389278230746E-4 0.0 0.0 6.3011028283666946 0.0 39 3.2817389278230746E-4 0.0 0.0 6.555437595272983 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 2575 0.0 40.718445 1 AAATGCG 45 1.925764E-8 40.0 1 ACAACGA 125 0.0 39.6 13 GGGCGAT 1460 0.0 39.452057 7 GCGATAA 80 0.0 39.375 9 ATAGGGC 340 0.0 39.04412 4 AATGCGG 75 0.0 39.0 2 CGTCATA 150 0.0 39.0 38 AGGGCGA 760 0.0 38.782894 6 TACGCGG 35 6.243459E-6 38.571426 2 GCGTAAG 70 0.0 38.571426 1 ACGGGAC 130 0.0 38.076927 5 CGGTCTA 65 9.094947E-12 38.076927 31 TACGGGA 125 0.0 37.8 4 TATACTA 280 0.0 37.767857 44 TAGGGAC 450 0.0 37.5 5 CGACGGT 60 1.546141E-10 37.499996 28 TTAACGG 60 1.546141E-10 37.499996 2 ATTCTCG 30 1.1392928E-4 37.499996 30 GCGATTG 175 0.0 37.285713 9 >>END_MODULE