##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547127_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 852017 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.379560501727077 31.0 31.0 33.0 30.0 34.0 2 31.75032305693431 31.0 31.0 34.0 30.0 34.0 3 31.87314689730369 31.0 31.0 34.0 30.0 34.0 4 35.64034050963772 37.0 35.0 37.0 33.0 37.0 5 35.56507557947788 37.0 35.0 37.0 33.0 37.0 6 35.60971670753048 37.0 35.0 37.0 33.0 37.0 7 35.95605604113533 37.0 35.0 37.0 35.0 37.0 8 34.61802522719617 37.0 35.0 37.0 33.0 37.0 9 36.92397921637714 39.0 37.0 39.0 33.0 39.0 10 36.84184939971855 39.0 37.0 39.0 32.0 39.0 11 36.7275887687687 39.0 35.0 39.0 32.0 39.0 12 36.37134822427252 38.0 35.0 39.0 32.0 39.0 13 36.25590686570808 39.0 35.0 39.0 32.0 39.0 14 37.30267353820405 39.0 35.0 41.0 32.0 41.0 15 37.49367207461823 40.0 35.0 41.0 32.0 41.0 16 37.54743039164711 40.0 35.0 41.0 32.0 41.0 17 37.45916689455727 39.0 35.0 41.0 32.0 41.0 18 37.38713781532528 39.0 35.0 41.0 32.0 41.0 19 37.31873894534968 39.0 35.0 41.0 32.0 41.0 20 37.19268864353646 39.0 35.0 41.0 32.0 41.0 21 37.08911207170749 39.0 35.0 41.0 32.0 41.0 22 37.003930672744794 39.0 35.0 41.0 31.0 41.0 23 36.92446394848929 39.0 35.0 41.0 31.0 41.0 24 36.75919846669726 38.0 35.0 41.0 31.0 41.0 25 36.647321591001116 38.0 35.0 41.0 31.0 41.0 26 36.49904872790097 38.0 35.0 41.0 31.0 41.0 27 36.38652749886446 38.0 35.0 40.0 30.0 41.0 28 36.409233618578035 38.0 35.0 40.0 30.0 41.0 29 36.36021699097553 38.0 35.0 40.0 30.0 41.0 30 36.28409879145604 38.0 35.0 40.0 30.0 41.0 31 36.17601644098651 38.0 35.0 40.0 30.0 41.0 32 36.103434555883275 38.0 35.0 40.0 30.0 41.0 33 35.971493526537614 38.0 35.0 41.0 30.0 41.0 34 35.79343135172186 38.0 35.0 40.0 29.0 41.0 35 35.65048115237137 38.0 35.0 40.0 28.0 41.0 36 35.51981826653694 38.0 35.0 40.0 28.0 41.0 37 35.45689698679721 38.0 34.0 40.0 27.0 41.0 38 35.36317233106851 38.0 34.0 40.0 27.0 41.0 39 35.250166369919846 38.0 34.0 40.0 27.0 41.0 40 35.087775243921186 37.0 34.0 40.0 26.0 41.0 41 34.98062832079641 37.0 34.0 40.0 26.0 41.0 42 34.919687048497856 37.0 34.0 40.0 26.0 41.0 43 34.8245821386193 37.0 34.0 40.0 26.0 41.0 44 34.67817895652317 36.0 34.0 40.0 25.0 41.0 45 34.55259460785407 36.0 34.0 40.0 24.0 41.0 46 34.48153381916089 36.0 34.0 40.0 24.0 41.0 47 34.38285151587351 36.0 33.0 40.0 24.0 41.0 48 34.30688472178372 35.0 33.0 40.0 24.0 41.0 49 34.23099539093703 36.0 33.0 40.0 24.0 41.0 50 34.12568763299324 35.0 33.0 40.0 24.0 41.0 51 33.748534360229904 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 3.0 13 8.0 14 13.0 15 35.0 16 92.0 17 228.0 18 440.0 19 837.0 20 1415.0 21 2107.0 22 3252.0 23 4593.0 24 6668.0 25 9451.0 26 12173.0 27 14445.0 28 16298.0 29 18162.0 30 21380.0 31 25800.0 32 31478.0 33 40900.0 34 66912.0 35 94870.0 36 73039.0 37 92919.0 38 124449.0 39 189890.0 40 157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.01868742055616 23.544718004452964 28.012703971869108 14.42389060312177 2 31.883870861731634 25.41134742616638 29.024068768580907 13.680712943521081 3 30.31793966552311 25.297382563962927 30.48683300920052 13.897844761313449 4 26.074479734559286 28.35295539877725 30.185782678045157 15.386782188618303 5 23.263855063924783 32.65932487262578 29.186272104899313 14.890547958550124 6 22.14591962366948 40.87113285298298 26.355577412187785 10.627370111159754 7 86.91458034288048 3.9969859756319415 7.170044729154465 1.9183889523331106 8 84.35148594452929 6.2914237626714025 6.648576260802308 2.708514031997014 9 81.27314361098429 5.5685508622480535 9.462839356491713 3.6954661702759455 10 45.665520758388624 25.8118089193056 15.048056552862207 13.474613769443566 11 36.750909899685105 23.617134399900472 22.709406032978215 16.92254966743621 12 31.89478613689633 20.822002377886825 27.899560689516754 19.383650795700085 13 24.510778540803763 26.99981338400525 29.197304748614172 19.292103326576818 14 21.22997545823616 28.444385499350368 30.48636353499989 19.839275507413586 15 20.759327572102436 22.02702528235939 36.955248545510244 20.25839860002793 16 23.173011806102462 19.586815756023647 35.37546786038307 21.864704577490826 17 23.688494478396557 20.754515461545957 28.068454033194172 27.488536026863315 18 25.573081288284154 21.41846934978997 31.193274312601744 21.815175049324136 19 28.778416393100137 24.8326031053371 24.84164048369927 21.54734001786349 20 29.650934194974983 23.345543574834775 25.19668034792733 21.806841882262912 21 26.7705926055466 24.945159544938658 26.834323728282417 21.44992412123232 22 26.442312770754572 22.254485532565667 26.31097736312773 24.99222433355203 23 24.333199924414654 25.458412214779752 25.48388119016405 24.72450667064155 24 24.03578801831419 23.472418977555613 31.209823278174024 21.281969725956174 25 24.287074084202544 24.016187470437796 28.24450685843123 23.45223158692843 26 22.211059169007193 25.94502222373497 27.06553977209375 24.778378835164087 27 22.286175041108336 24.97778800188259 27.632547237907225 25.10348971910185 28 21.7204586293466 24.875325257594625 30.09705205412568 23.307164058933097 29 22.483471573923993 23.219372383414886 29.699172669089936 24.597983373571182 30 23.994004814457927 24.63788868062492 28.92712234615037 22.440984158766785 31 27.437011233343934 24.997858023959616 25.028491215550865 22.536639527145585 32 27.98746973358513 24.050928561284575 24.57497913774021 23.386622567390088 33 26.6894909373874 25.424844809434553 24.416648963577018 23.46901528960103 34 23.52875588163147 25.44186324920747 26.735616777599507 24.293764091561552 35 23.384979407687876 26.273654164177472 27.247461024838703 23.093905403295945 36 27.667523065854322 25.6672108655109 24.199869251435125 22.465396817199657 37 23.84259938475406 28.32701694919233 25.450431153369006 22.379952512684607 38 24.48155377181441 27.827731136820038 24.959595876608095 22.731119214757452 39 23.62206387900711 27.066948194695645 24.34657993913267 24.964407987164574 40 25.678360877775912 24.56793702473073 26.099948709943583 23.653753387549777 41 22.2857055669077 23.453522640980168 27.038427637007246 27.22234415510489 42 24.132147597993935 25.024970159046124 24.796336223338265 26.046546019621676 43 23.435799989906307 23.408453117719482 27.207907823435445 25.947839068938766 44 23.05716904709648 24.71007033897211 27.388655390678824 24.844105223252587 45 22.45811996708986 26.37212637776007 25.814508395959233 25.355245259190838 46 24.392236305144145 25.8271841993763 26.63115876795886 23.149420727520695 47 23.344839363533826 25.246092507543867 27.56412137316509 23.84494675575722 48 23.426645242993978 23.66678129661732 28.478891853096826 24.427681607291873 49 23.655279178701832 23.143904405663267 28.60365462191482 24.59716179372008 50 22.508588443657814 25.648901371686243 28.293214806746814 23.549295377909125 51 21.792170813493158 26.465903849336343 27.079506629562555 24.662418707607948 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 762.0 1 1070.0 2 1378.0 3 5129.0 4 8880.0 5 6134.0 6 3388.0 7 3442.5 8 3497.0 9 3789.0 10 4081.0 11 4277.5 12 4474.0 13 4567.0 14 4660.0 15 4447.5 16 4235.0 17 4138.0 18 4041.0 19 3817.0 20 3593.0 21 3605.5 22 3618.0 23 3677.5 24 3737.0 25 3959.5 26 4569.0 27 4956.0 28 5633.5 29 6311.0 30 7439.0 31 8567.0 32 10003.5 33 11440.0 34 14436.0 35 17432.0 36 19447.5 37 21463.0 38 22749.5 39 24036.0 40 29523.0 41 35010.0 42 39785.5 43 44561.0 44 47232.5 45 49904.0 46 53878.0 47 57852.0 48 60597.0 49 63342.0 50 60864.0 51 58386.0 52 55613.5 53 52841.0 54 51689.5 55 50538.0 56 49589.5 57 48641.0 58 47940.0 59 47239.0 60 45353.5 61 43468.0 62 41289.0 63 39110.0 64 36134.5 65 33159.0 66 29012.0 67 24865.0 68 21930.5 69 18996.0 70 16124.0 71 13252.0 72 11111.0 73 8970.0 74 7570.5 75 4767.5 76 3364.0 77 2599.5 78 1835.0 79 1395.5 80 956.0 81 691.0 82 426.0 83 316.5 84 207.0 85 160.0 86 113.0 87 75.0 88 37.0 89 34.0 90 31.0 91 17.5 92 4.0 93 6.0 94 8.0 95 4.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 852017.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.783975109013554 #Duplication Level Percentage of deduplicated Percentage of total 1 74.64201825908543 22.231360139151356 2 6.4129897224162775 3.8200865253361234 3 2.741201361542812 2.4493161936295555 4 1.8553108842530253 2.2103413278429613 5 1.4014057411115648 2.0869716855447766 6 1.1518102440218447 2.058329258295207 7 1.0149226458946565 2.115990157603044 8 0.8657352175257325 2.062802893582628 9 0.7433830884501025 1.9926813062573527 >10 9.025285808818106 54.52819163536883 >50 0.1207334180831855 2.2056193566912556 >100 0.02276454988135877 1.258209149082198 >500 0.00203254909654989 0.35474911535901077 >1k 0.0 0.0 >5k 4.065098193099779E-4 0.6253512562557306 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5165 0.6062085615662598 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04025741270420661 0.0 2 0.0 0.0 0.0 0.1363822552836387 0.0 3 0.0 0.0 0.0 0.22253077109963768 0.0 4 0.0 0.0 0.0 0.408677291650284 0.0 5 0.0 0.0 0.0 0.6874275982756213 0.0 6 0.0 0.0 0.0 1.3211004005788618 0.0 7 0.0 0.0 0.0 1.622033363184068 0.0 8 0.0 0.0 0.0 2.373426821295819 0.0 9 0.0 0.0 0.0 2.7484193390507468 0.0 10 0.0 0.0 0.0 3.275756234910806 0.0 11 0.0 0.0 0.0 3.6680019295389648 0.0 12 0.0 0.0 0.0 3.9900612311726174 0.0 13 0.0 0.0 0.0 4.168813533063307 0.0 14 0.0 0.0 0.0 4.248741515720931 0.0 15 0.0 0.0 0.0 4.325970021724919 0.0 16 0.0 0.0 0.0 4.455897006749865 0.0 17 0.0 0.0 0.0 4.593452947535084 0.0 18 0.0 0.0 0.0 4.813284241981087 0.0 19 0.0 0.0 0.0 4.915864354819211 0.0 20 0.0 0.0 0.0 5.024312895165237 0.0 21 0.0 0.0 0.0 5.156704619743503 0.0 22 0.0 0.0 0.0 5.305058467143261 0.0 23 0.0 0.0 0.0 5.475947076173362 0.0 24 0.0 0.0 0.0 5.617376179113797 0.0 25 0.0 0.0 0.0 5.730284724365829 0.0 26 0.0 0.0 0.0 5.84378011236865 0.0 27 0.0 0.0 0.0 5.962322348028267 0.0 28 0.0 0.0 0.0 6.078047738484091 0.0 29 0.0 0.0 0.0 6.212434728415043 0.0 30 0.0 0.0 0.0 6.391069661755576 0.0 31 0.0 0.0 0.0 6.525808757337002 0.0 32 0.0 0.0 0.0 6.658669956115899 0.0 33 0.0 0.0 0.0 6.810779597120715 0.0 34 0.0 0.0 0.0 6.951856594410675 0.0 35 0.0 0.0 0.0 7.112064665376395 0.0 36 0.0 0.0 0.0 7.251615871514301 0.0 37 0.0 0.0 0.0 7.406659726273067 0.0 38 0.0 0.0 0.0 7.584355711212335 0.0 39 0.0 0.0 0.0 7.872026027649683 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTAA 30 2.1648375E-6 45.000004 31 CTCACGA 80 0.0 45.0 24 ATCTAGT 25 3.8899525E-5 45.0 29 ATCGAAC 25 3.8899525E-5 45.0 21 CGAATAT 125 0.0 43.2 14 TCACGAC 75 0.0 42.0 25 CGGTCTA 75 0.0 42.0 31 CGTTTTT 2905 0.0 41.12737 1 TCGTTAG 50 1.0804797E-9 40.5 1 TACGGGA 210 0.0 39.642857 4 ATAACGC 75 0.0 39.0 11 TATACTA 705 0.0 38.93617 44 AAGTACG 35 6.246388E-6 38.571426 1 TTAACGG 70 0.0 38.571426 2 ATACCGG 35 6.246388E-6 38.571426 2 ATACTAT 715 0.0 38.391605 45 TAACGGG 165 0.0 38.181816 3 ATTATAC 720 0.0 38.125 42 CAACCCG 65 9.094947E-12 38.076927 23 ACGTAGG 95 0.0 37.894737 2 >>END_MODULE