SRR1547123_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547123_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	880229
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4042	0.45919868579653705	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	882	0.10020119764288611	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	45	3.8380676E-10	45.000004	1
TCACGAA	20	7.032387E-4	45.0	35
ACTTAGC	20	7.032387E-4	45.0	30
TTATCGC	20	7.032387E-4	45.0	45
CGTTATT	25	3.8900584E-5	45.0	32
ACGTATC	20	7.032387E-4	45.0	12
TACACCG	20	7.032387E-4	45.0	29
TACGTAG	25	3.8900584E-5	45.0	1
TCAACGG	30	2.1649212E-6	44.999996	2
TACGGGA	170	0.0	42.35294	4
CGTTTTT	2905	0.0	41.979347	1
CGGGATA	120	0.0	41.249996	6
GGACGTA	50	1.0804797E-9	40.5	8
CGTAAGG	95	0.0	40.263157	2
GCGATAT	135	0.0	40.000004	9
TCGTTAG	40	3.4569894E-7	39.375	1
GCGTAAG	40	3.4569894E-7	39.375	1
GGGCGAT	1850	0.0	38.7973	7
TAATACG	35	6.2466224E-6	38.571426	1
AGGGCGA	940	0.0	38.29787	6