Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547119_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1072798 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5224 | 0.48695094509870446 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTGCG | 35 | 1.211829E-7 | 45.0 | 1 |
CTCGCTA | 25 | 3.8906306E-5 | 45.0 | 45 |
GTTCACG | 20 | 7.033077E-4 | 45.0 | 1 |
CGGTCTA | 20 | 7.033077E-4 | 45.0 | 31 |
ATACGAC | 35 | 1.211829E-7 | 45.0 | 14 |
TCGACAG | 20 | 7.033077E-4 | 45.0 | 1 |
AATACCG | 20 | 7.033077E-4 | 45.0 | 35 |
TCGAAAG | 40 | 6.8139343E-9 | 45.0 | 1 |
TCGATAG | 60 | 3.6379788E-12 | 41.249996 | 1 |
CGTTTTT | 4045 | 0.0 | 41.050682 | 1 |
CGTTCGA | 50 | 1.0822987E-9 | 40.5 | 14 |
TGGGCGA | 705 | 0.0 | 40.212765 | 6 |
AACGGGA | 270 | 0.0 | 40.000004 | 4 |
TAACGGG | 235 | 0.0 | 39.255318 | 3 |
TACGGGA | 230 | 0.0 | 39.130432 | 4 |
GGCGATA | 530 | 0.0 | 39.056602 | 8 |
TATGGGC | 480 | 0.0 | 38.906246 | 4 |
TAGGGCG | 465 | 0.0 | 38.709675 | 5 |
ACTGACG | 35 | 6.2478994E-6 | 38.571426 | 1 |
CGCATCG | 35 | 6.2478994E-6 | 38.571426 | 21 |