##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547118_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 562435 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.429930569754728 31.0 31.0 33.0 30.0 34.0 2 31.780276831989475 31.0 31.0 34.0 30.0 34.0 3 31.888029727879665 31.0 31.0 34.0 30.0 34.0 4 35.63410349640403 37.0 35.0 37.0 33.0 37.0 5 35.561732466862836 37.0 35.0 37.0 33.0 37.0 6 35.60904993465912 37.0 35.0 37.0 33.0 37.0 7 35.974994443802395 37.0 35.0 37.0 35.0 37.0 8 34.66507774231689 37.0 35.0 37.0 33.0 37.0 9 36.99401175246918 39.0 37.0 39.0 33.0 39.0 10 36.89894298896761 39.0 37.0 39.0 32.0 39.0 11 36.746742290220205 39.0 35.0 39.0 32.0 39.0 12 36.05467298443376 37.0 35.0 39.0 32.0 39.0 13 35.719292007076376 37.0 35.0 39.0 31.0 39.0 14 36.72423480046583 39.0 35.0 41.0 31.0 41.0 15 37.05667854952128 39.0 35.0 41.0 32.0 41.0 16 37.20356663436664 39.0 35.0 41.0 32.0 41.0 17 37.13326339932615 38.0 35.0 41.0 32.0 41.0 18 37.08341052743873 38.0 35.0 41.0 32.0 41.0 19 37.01041720376577 38.0 35.0 41.0 32.0 41.0 20 36.83479690986514 38.0 35.0 41.0 32.0 41.0 21 36.70168819508032 38.0 35.0 41.0 32.0 41.0 22 36.583048707850686 38.0 35.0 41.0 31.0 41.0 23 36.531695218114095 38.0 35.0 40.0 31.0 41.0 24 36.40579978130806 38.0 35.0 40.0 31.0 41.0 25 36.30753420395246 37.0 35.0 40.0 31.0 41.0 26 36.181798785637454 37.0 35.0 40.0 31.0 41.0 27 36.0803523962769 37.0 35.0 40.0 31.0 41.0 28 36.11652902113133 37.0 35.0 40.0 31.0 41.0 29 36.11930800892548 37.0 35.0 40.0 31.0 41.0 30 36.094185105834455 37.0 35.0 40.0 31.0 41.0 31 35.9458639665028 37.0 35.0 40.0 30.0 41.0 32 35.77071483815907 37.0 35.0 40.0 30.0 41.0 33 35.64165103523074 37.0 35.0 40.0 30.0 41.0 34 35.53755722883533 37.0 35.0 40.0 29.0 41.0 35 35.369048867869175 37.0 35.0 40.0 29.0 41.0 36 35.22046636500218 37.0 34.0 40.0 28.0 41.0 37 35.13758034261737 37.0 34.0 40.0 27.0 41.0 38 35.07027656529199 36.0 34.0 40.0 27.0 41.0 39 35.0247566385449 36.0 34.0 40.0 27.0 41.0 40 34.849355036582004 36.0 34.0 40.0 26.0 41.0 41 34.8187274973997 36.0 34.0 40.0 26.0 41.0 42 34.75456897241459 36.0 34.0 40.0 26.0 41.0 43 34.66527687643906 36.0 34.0 40.0 26.0 41.0 44 34.5467209544214 35.0 34.0 40.0 26.0 41.0 45 34.41117106865682 35.0 34.0 40.0 25.0 41.0 46 34.35542951629966 35.0 34.0 40.0 24.0 41.0 47 34.30522993768169 35.0 34.0 40.0 25.0 41.0 48 34.28745543929521 35.0 34.0 40.0 25.0 41.0 49 34.25132504200485 35.0 34.0 40.0 25.0 41.0 50 34.09056868793727 35.0 34.0 40.0 24.0 41.0 51 33.739507676442614 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 2.0 11 5.0 12 1.0 13 9.0 14 11.0 15 15.0 16 34.0 17 121.0 18 269.0 19 495.0 20 950.0 21 1418.0 22 2099.0 23 3108.0 24 4539.0 25 6364.0 26 8379.0 27 9983.0 28 10911.0 29 12259.0 30 14321.0 31 17323.0 32 21244.0 33 27971.0 34 50698.0 35 88637.0 36 40698.0 37 48934.0 38 72046.0 39 119504.0 40 86.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.778836665570246 23.652333158498315 28.62001831322731 13.948811862704137 2 29.54119142656485 26.44109986042832 29.965418226106127 14.05229048690071 3 28.575568732386852 25.75230915572466 32.0717949629735 13.600327148914987 4 24.513766035186286 28.222461262190297 31.65574688630686 15.608025816316552 5 22.799790197978435 32.62065838719141 30.25949665294656 14.320054761883597 6 21.241921288682246 41.22663063287313 27.12989056513197 10.40155751331265 7 86.05527749873319 4.6904975686079275 7.3868091423897875 1.8674157902690978 8 84.30467520691279 6.1420430805337505 6.146488038617796 3.406793673935655 9 82.28844221998986 5.1232586876705755 9.34010152284264 3.2481975694969196 10 50.581667214878166 21.725710526549737 14.161280859121497 13.531341399450604 11 43.244997199676405 21.131686328197922 21.17560251406829 14.447713958057376 12 37.88917830504858 20.634562216078304 25.200067563362875 16.27619191551024 13 21.473059109052603 37.84704010241183 26.03696427142692 14.642936517108643 14 16.060344750949 39.375038893383234 28.800305813116182 15.764310542551584 15 13.781859237067396 23.30651541955959 47.391431898797194 15.520193444575817 16 16.084880919572928 18.815329771440258 45.43831731666771 19.661471992319115 17 16.490972290131303 20.017957630659545 29.224710410980826 34.26635966822833 18 21.56551423720074 23.29726990674478 33.10106945691502 22.036146399139454 19 27.644438912941048 25.665365775600733 25.681901019673386 21.00829429178483 20 30.013423773413816 23.082489532123713 24.70952198920764 22.19456470525483 21 23.255487300754755 27.893889960617674 27.352316267657596 21.49830647096998 22 23.38154631201828 24.834869807177718 24.984042600478276 26.799541280325727 23 19.92656929245157 30.635895703503518 24.43624596620054 25.00128903784437 24 21.368335896592495 23.2305955354841 36.93155653542187 18.469512032501534 25 19.201152133135384 24.40406446967205 33.70931752113577 22.68546587605679 26 17.945006978584193 32.369784952927894 27.503444842515133 22.181763225972777 27 19.621467369562705 30.85725461608897 27.737783032706005 21.783494981642324 28 16.80371954092473 27.881266279658984 35.94495363908719 19.370060540329103 29 17.00605403291047 24.619556037586566 34.518122094108655 23.856267835394313 30 20.135660120725063 27.95576377714758 30.689768595482143 21.218807506645213 31 28.388524896210228 25.073475157129266 24.679651870882857 21.858348075777645 32 28.951612186297083 26.14613244197107 24.94706054921902 19.955194822512823 33 26.61356423408927 25.214113630908457 25.41751491283437 22.754807222167894 34 21.121729622089664 26.548134451092125 28.543387235858365 23.786748690959843 35 20.771111328420172 24.609065936508216 31.62516557468863 22.994657160382978 36 29.85571666059189 24.363170855298836 25.883346520042316 19.89776596406696 37 21.47003653755545 28.612550783646114 29.909945149217243 20.007467529581195 38 21.756647434814692 31.269568927965008 24.969818734609333 22.003964902610967 39 21.401939779707877 28.979882119711608 27.960208735231628 21.657969365348883 40 23.856445633717673 25.08040929174038 26.711708908584992 24.351436165956954 41 17.965987180740886 23.93752166917066 28.612550783646114 29.483940366442347 42 23.0928018348787 25.804581862793036 24.846071101549512 26.25654520077876 43 22.926915999182125 24.847137891489684 27.601589517010854 24.624356592317334 44 21.48479379839448 28.683492314667475 27.81405851342822 22.01765537350983 45 19.46393805506414 31.80207490643363 25.286477548516718 23.44750948998551 46 23.123205348173567 28.52614079849227 26.70175220247673 21.648901650857432 47 22.41752380275054 25.322392809835804 28.414839048067776 23.845244339345882 48 23.959746459590885 22.61310195844853 30.155840230426627 23.271311351533956 49 21.87826148799417 22.688844044200664 31.304595197667282 24.12829927013788 50 20.229182038813374 29.544391796385362 27.83574990887836 22.390676255922905 51 19.596575604292052 29.842026189693033 25.327371162889932 25.234027043124986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 606.0 1 794.5 2 983.0 3 2988.0 4 4993.0 5 3485.0 6 1977.0 7 2149.5 8 2322.0 9 2617.5 10 2913.0 11 3037.0 12 3161.0 13 3115.0 14 3069.0 15 3177.5 16 3286.0 17 3108.0 18 2930.0 19 2843.5 20 2757.0 21 2789.0 22 2821.0 23 2779.5 24 2738.0 25 2834.5 26 3184.5 27 3438.0 28 4035.5 29 4633.0 30 5451.0 31 6269.0 32 6754.5 33 7240.0 34 8597.0 35 9954.0 36 11693.0 37 13432.0 38 15963.0 39 18494.0 40 25347.5 41 32201.0 42 39470.0 43 46739.0 44 48649.0 45 50559.0 46 51355.5 47 52152.0 48 52734.5 49 53317.0 50 49909.0 51 46501.0 52 42279.0 53 38057.0 54 34361.0 55 30665.0 56 27510.0 57 24355.0 58 23036.0 59 21717.0 60 20018.0 61 18319.0 62 16373.0 63 14427.0 64 12856.0 65 11285.0 66 9150.5 67 7016.0 68 6047.5 69 5079.0 70 4324.5 71 3570.0 72 2878.0 73 2186.0 74 1987.0 75 1284.0 76 780.0 77 573.5 78 367.0 79 301.0 80 235.0 81 176.0 82 117.0 83 69.0 84 21.0 85 17.0 86 13.0 87 8.0 88 3.0 89 3.5 90 4.0 91 5.5 92 7.0 93 6.5 94 6.0 95 4.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 562435.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.454153075277354 #Duplication Level Percentage of deduplicated Percentage of total 1 78.78140953495935 21.628768768588895 2 6.697218807439792 3.67732940636157 3 2.397738672051249 1.9748365361102174 4 1.2867636685349182 1.4130802691065238 5 0.8921983534942106 1.224727508517024 6 0.6344171718699776 1.0450431690061746 7 0.5319249974828568 1.0222485213822612 8 0.4839967737056596 1.0630177210604443 9 0.41949150816575076 1.0365105671065336 >10 6.923503911037006 47.47740459116335 >50 0.9035076949975821 15.425891929652025 >100 0.04389776328124583 1.816757719273834 >500 0.0026207619869400497 0.4029244842745929 >1k 0.0013103809934700249 0.7914588083965217 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2966 0.5273498270911305 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1434 0.2549627957008365 No Hit GAGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 667 0.11859148168232773 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09814467449571951 0.0 2 0.0 0.0 0.0 0.31523642732049034 0.0 3 0.0 0.0 0.0 0.45000755642874285 0.0 4 0.0 0.0 0.0 0.8788571123774302 0.0 5 0.0 0.0 0.0 1.3375767866509018 0.0 6 0.0 0.0 0.0 2.156515864055402 0.0 7 0.0 0.0 0.0 2.5016224097006767 0.0 8 0.0 0.0 0.0 3.60468320783735 0.0 9 0.0 0.0 0.0 4.041355890013957 0.0 10 0.0 0.0 0.0 4.760550108012481 0.0 11 0.0 0.0 0.0 5.338394658938366 0.0 12 0.0 0.0 0.0 5.858632553095024 0.0 13 0.0 0.0 0.0 6.072701734422645 0.0 14 0.0 0.0 0.0 6.148799416821499 0.0 15 0.0 0.0 0.0 6.240898948322918 0.0 16 0.0 0.0 0.0 6.441277658751678 0.0 17 0.0 0.0 0.0 6.670459697565052 0.0 18 0.0 0.0 0.0 7.010943486802919 0.0 19 0.0 0.0 0.0 7.1405584645336795 0.0 20 0.0 0.0 0.0 7.297909980708882 0.0 21 0.0 0.0 0.0 7.496688506227386 0.0 22 0.0 0.0 0.0 7.710224292584921 0.0 23 0.0 0.0 0.0 7.958252953674647 0.0 24 0.0 0.0 0.0 8.134451092126202 0.0 25 1.777983233618107E-4 0.0 0.0 8.280956910576334 0.0 26 1.777983233618107E-4 0.0 0.0 8.424795754176039 0.0 27 1.777983233618107E-4 0.0 0.0 8.55850009334412 0.0 28 1.777983233618107E-4 0.0 0.0 8.694871407362628 0.0 29 1.777983233618107E-4 0.0 0.0 8.839065847609056 0.0 30 1.777983233618107E-4 0.0 0.0 9.053846222230124 0.0 31 1.777983233618107E-4 0.0 0.0 9.208530763554899 0.0 32 1.777983233618107E-4 0.0 0.0 9.357703556855459 0.0 33 1.777983233618107E-4 0.0 0.0 9.496030652430948 0.0 34 1.777983233618107E-4 0.0 0.0 9.670806404295607 0.0 35 1.777983233618107E-4 0.0 0.0 9.873674291251433 0.0 36 1.777983233618107E-4 0.0 0.0 10.038137740361108 0.0 37 1.777983233618107E-4 0.0 0.0 10.198511828033462 0.0 38 1.777983233618107E-4 0.0 0.0 10.364042067083307 0.0 39 1.777983233618107E-4 0.0 0.0 10.51943780170153 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 20 7.0302107E-4 45.0 1 ATTAGCG 20 7.0302107E-4 45.0 1 GTCGAAT 20 7.0302107E-4 45.0 13 ATAGGAC 20 7.0302107E-4 45.0 26 TGAAGCG 20 7.0302107E-4 45.0 1 GGCGTAT 25 3.888256E-5 45.0 8 TAGCGAA 20 7.0302107E-4 45.0 29 TAACGCG 20 7.0302107E-4 45.0 1 TGTTACG 45 3.8380676E-10 45.0 1 CGAATAT 35 1.2104465E-7 45.0 14 CCGACAG 20 7.0302107E-4 45.0 12 TGTAGCG 45 3.8380676E-10 45.0 1 GTCCCGT 20 7.0302107E-4 45.0 27 GCTACGA 35 1.2104465E-7 45.0 10 CTTTACG 25 3.888256E-5 45.0 1 CGCGTAA 35 1.2104465E-7 45.0 31 CGACTAA 35 1.2104465E-7 45.0 30 TAATGCG 20 7.0302107E-4 45.0 1 TCGAATC 25 3.888256E-5 45.0 14 GCGTAAC 35 1.2104465E-7 45.0 32 >>END_MODULE