##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547116_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 999647 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.419366036210782 31.0 31.0 33.0 30.0 34.0 2 31.790736129853837 31.0 31.0 34.0 30.0 34.0 3 31.87187477179444 31.0 31.0 34.0 30.0 34.0 4 35.65784321865618 37.0 35.0 37.0 33.0 37.0 5 35.60725636149561 37.0 35.0 37.0 33.0 37.0 6 35.653667744713886 37.0 35.0 37.0 33.0 37.0 7 36.01734912424086 37.0 35.0 37.0 35.0 37.0 8 34.69981903611975 37.0 35.0 37.0 33.0 37.0 9 37.01768024112512 39.0 37.0 39.0 34.0 39.0 10 36.81998245380619 39.0 37.0 39.0 32.0 39.0 11 36.81535381989843 39.0 37.0 39.0 32.0 39.0 12 36.661490506148674 39.0 35.0 39.0 32.0 39.0 13 36.64959730784967 39.0 35.0 39.0 32.0 39.0 14 37.76948762913308 40.0 36.0 41.0 33.0 41.0 15 37.88820253549503 40.0 36.0 41.0 33.0 41.0 16 37.894515764064714 40.0 36.0 41.0 33.0 41.0 17 37.791210297234926 40.0 36.0 41.0 33.0 41.0 18 37.700979445744345 39.0 36.0 41.0 33.0 41.0 19 37.6175870082139 39.0 36.0 41.0 33.0 41.0 20 37.4460504558109 39.0 35.0 41.0 32.0 41.0 21 37.3732667631674 39.0 35.0 41.0 32.0 41.0 22 37.280560037693306 39.0 35.0 41.0 32.0 41.0 23 37.20765530232172 39.0 35.0 41.0 32.0 41.0 24 37.04924238256105 39.0 35.0 41.0 32.0 41.0 25 36.938920438914934 39.0 35.0 41.0 31.0 41.0 26 36.84060073205842 39.0 35.0 41.0 31.0 41.0 27 36.72606830211065 39.0 35.0 41.0 31.0 41.0 28 36.713662923011825 39.0 35.0 41.0 31.0 41.0 29 36.67426601590361 39.0 35.0 41.0 31.0 41.0 30 36.594777956618685 38.0 35.0 41.0 31.0 41.0 31 36.49055016420797 38.0 35.0 41.0 30.0 41.0 32 36.37587668446962 39.0 35.0 41.0 30.0 41.0 33 36.183004600624024 39.0 35.0 41.0 30.0 41.0 34 35.96751253192377 39.0 35.0 41.0 29.0 41.0 35 35.811192350899866 39.0 35.0 41.0 27.0 41.0 36 35.673563768010105 38.0 35.0 41.0 27.0 41.0 37 35.6272324130418 38.0 35.0 41.0 27.0 41.0 38 35.52522740527406 38.0 35.0 41.0 26.0 41.0 39 35.43713931017649 38.0 35.0 41.0 26.0 41.0 40 35.31992693420778 38.0 35.0 40.0 26.0 41.0 41 35.21893828521468 38.0 34.0 40.0 25.0 41.0 42 35.15162752451615 38.0 34.0 40.0 25.0 41.0 43 35.06578622253655 38.0 34.0 40.0 24.0 41.0 44 34.939937798042706 38.0 34.0 40.0 24.0 41.0 45 34.81939224546265 38.0 34.0 40.0 24.0 41.0 46 34.75533463312549 37.0 34.0 40.0 24.0 41.0 47 34.69435810841227 37.0 34.0 40.0 23.0 41.0 48 34.612505214340665 37.0 34.0 40.0 23.0 41.0 49 34.52345778059655 37.0 34.0 40.0 24.0 41.0 50 34.4248769815745 37.0 34.0 40.0 24.0 41.0 51 34.06892933205422 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 6.0 13 4.0 14 14.0 15 23.0 16 78.0 17 188.0 18 417.0 19 810.0 20 1455.0 21 2229.0 22 3554.0 23 5318.0 24 7796.0 25 11791.0 26 16258.0 27 18772.0 28 19222.0 29 20368.0 30 23060.0 31 27632.0 32 33527.0 33 42642.0 34 65658.0 35 90172.0 36 81409.0 37 107015.0 38 156467.0 39 263570.0 40 190.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.668284904571316 23.213594398822785 26.79335805539355 16.32476264121235 2 34.0085050022658 24.289374149074625 28.432636720762428 13.269484127897147 3 29.26683119141057 24.536261300238984 32.67683492272772 13.520072585622724 4 24.80585646733297 27.89854818751019 32.30120232442052 14.994393020736322 5 22.38420162317298 31.80272636240593 31.174404564811383 14.638667449609713 6 20.978605447723044 40.44287633534638 28.25597435894871 10.322543857981868 7 86.62677925307634 3.1546135785932434 8.676462791365353 1.5421443769650687 8 84.22263058859778 5.421813900306809 8.191491596533576 2.16406391456184 9 81.53058029484409 4.505390402812193 10.886743020286161 3.0772862820575666 10 37.28186049675536 26.914400783476566 20.985007707720825 14.818731012047254 11 30.702437960600093 25.13877398721749 25.65525630547583 18.503531746706585 12 27.214106579622605 22.48023552313967 30.31790221948348 19.987755677754247 13 24.05229045853186 25.468990553665442 31.233125293228508 19.245593694574183 14 21.851613619607722 26.98012398376627 31.640369050274746 19.527893346351263 15 21.148265337664196 23.919743669515338 35.66919122450225 19.262799768318217 16 23.567519334325016 21.895829227717385 34.06612534224581 20.470526095711786 17 23.032230377323195 22.974910143280578 30.39322880976985 23.59963066962638 18 24.327487603123902 23.14707091603336 31.960782156101104 20.564659324741633 19 26.24696517870808 25.77449839793447 27.64725948259736 20.331276940760088 20 27.62485157260513 24.378705683106137 27.761699880057662 20.234742864231073 21 26.181442049043312 24.814259433580055 28.99183411744346 20.012464399933176 22 24.679511867689293 22.690809855879127 29.037950396489958 23.59172787994162 23 23.387655842512405 25.872432968837998 28.160140529606952 22.57977065904264 24 22.867272147067915 24.616489620836155 32.16925574727879 20.34698248481714 25 23.469484728109023 25.35154909683118 29.688680104076738 21.490286070983057 26 22.410911051601214 26.15763364467657 28.47024999824938 22.96120530547283 27 22.316477716633973 25.09015682535935 29.69268151657535 22.900683941431325 28 21.288814951677942 26.339897983988347 30.97623461081762 21.39505245351609 29 22.4778346756405 24.479841384008555 30.352314366971537 22.690009573379402 30 23.09515258886387 25.023933448507325 30.638315325309833 21.242598637318974 31 25.021332530383226 25.806209591985972 27.66736658040288 21.50509129722792 32 25.25171385499081 25.087555907235252 27.51081131639469 22.149918921379246 33 24.212346958476342 25.934654933191414 27.06865523529806 22.78434287303418 34 22.028476052046372 26.9777231362671 28.361711684224534 22.63208912746199 35 22.469231638768488 26.616395587642437 28.474251410747993 22.440121362841083 36 25.35695100370431 27.63975683416246 25.981571494737643 21.02172066739559 37 23.074245208558622 27.898448152197723 27.24701819742369 21.780288441819962 38 23.764889005819054 27.865736605021574 27.1630885702653 21.20628581889407 39 23.055038428565283 26.911599794727536 26.667213526374812 23.366148250332365 40 24.360599291549917 25.385961244319244 28.25187291113763 22.001566552993207 41 22.025875133922273 25.149477765651273 28.696930016295752 24.127717084130698 42 23.17428052102392 26.277976125572327 26.79505865570546 23.752684697698285 43 22.730423839615383 25.289627238415164 28.564883403841556 23.4150655181279 44 22.819755373646895 26.48905063487411 28.121827004932744 22.569366986546253 45 22.012370366739457 26.989327232513077 27.170491183387735 23.82781121735973 46 23.29092169535846 26.674916245434638 27.73379002787984 22.300372031327058 47 22.692010279628708 26.349101232735155 28.347906811104316 22.610981676531814 48 22.953102445163143 25.976269623176982 28.232566095831828 22.838061835828046 49 22.634590010273627 25.491098357720276 28.637609076003827 23.23670255600227 50 22.278064156647297 26.235461117774573 29.170397150194017 22.31607757538411 51 21.687855813102026 26.739238951349826 28.486355683556297 23.08654955199185 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 609.0 1 884.0 2 1159.0 3 7883.5 4 14608.0 5 10125.0 6 5642.0 7 5710.5 8 5779.0 9 6043.0 10 6307.0 11 6318.5 12 6330.0 13 6291.5 14 6253.0 15 6095.5 16 5938.0 17 5668.0 18 5398.0 19 5267.5 20 5137.0 21 4941.5 22 4746.0 23 4894.5 24 5043.0 25 5455.5 26 6847.5 27 7827.0 28 8685.5 29 9544.0 30 11029.0 31 12514.0 32 14903.5 33 17293.0 34 20614.5 35 23936.0 36 26367.0 37 28798.0 38 32102.0 39 35406.0 40 40556.5 41 45707.0 42 49957.5 43 54208.0 44 57950.5 45 61693.0 46 67057.5 47 72422.0 48 75944.5 49 79467.0 50 77538.5 51 75610.0 52 72883.5 53 70157.0 54 65945.5 55 61734.0 56 58316.5 57 54899.0 58 52201.5 59 49504.0 60 45999.5 61 42495.0 62 38221.5 63 33948.0 64 29997.5 65 26047.0 66 22815.0 67 19583.0 68 16294.5 69 13006.0 70 11611.5 71 10217.0 72 8140.5 73 6064.0 74 4992.0 75 3171.0 76 2422.0 77 1857.0 78 1292.0 79 976.5 80 661.0 81 479.5 82 298.0 83 190.5 84 83.0 85 61.0 86 39.0 87 27.0 88 15.0 89 13.5 90 12.0 91 7.5 92 3.0 93 2.0 94 1.0 95 2.5 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 999647.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.083605560968 #Duplication Level Percentage of deduplicated Percentage of total 1 71.02085670763924 24.206468666252047 2 7.500467288787077 5.112859371879237 3 3.904381012867402 3.9922614720691576 4 2.7483174839640188 3.7469027631896648 5 2.0356526852403514 3.469119159142874 6 1.6567793353597322 3.3881408020778303 7 1.3580337892990475 3.2400681609054827 8 1.1388503423829133 3.1052900690202065 9 1.0245620034327965 3.1428690477982726 >10 7.552682615766814 43.45554846918169 >50 0.041411875684088696 0.9251213983399356 >100 0.01710461659790722 1.210567402649275 >500 6.001619857573954E-4 0.12590473745271674 >1k 0.0 0.0 >5k 3.000809928786977E-4 0.8788784800415881 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8593 0.8596034400143251 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03141108811410428 0.0 2 0.0 0.0 0.0 0.10173591277721035 0.0 3 0.0 0.0 0.0 0.17096034900319812 0.0 4 0.0 0.0 0.0 0.29900554895878245 0.0 5 0.0 0.0 0.0 0.5014770213885501 0.0 6 0.0 0.0 0.0 1.044868838700061 0.0 7 0.0 0.0 0.0 1.323367148603457 0.0 8 0.0 0.0 0.0 1.9905026474345444 0.0 9 0.0 0.0 0.0 2.344227512311846 0.0 10 0.0 0.0 0.0 2.8301990602682747 0.0 11 0.0 0.0 0.0 3.1541134020309167 0.0 12 0.0 0.0 0.0 3.4278100169359784 0.0 13 0.0 0.0 0.0 3.5946689181280993 0.0 14 0.0 0.0 0.0 3.694204054031073 0.0 15 0.0 0.0 0.0 3.77813368118946 0.0 16 0.0 0.0 0.0 3.8939745730242774 0.0 17 0.0 0.0 0.0 4.018318466418646 0.0 18 0.0 0.0 0.0 4.197181605106603 0.0 19 0.0 0.0 0.0 4.304319424756939 0.0 20 0.0 0.0 0.0 4.412957774094255 0.0 21 0.0 0.0 0.0 4.539002267800534 0.0 22 0.0 0.0 0.0 4.685554000562198 0.0 23 0.0 0.0 0.0 4.854713713941021 0.0 24 0.0 0.0 0.0 4.998964634515984 0.0 25 0.0 0.0 0.0 5.119407150724205 0.0 26 0.0 0.0 0.0 5.235948289746281 0.0 27 0.0 0.0 0.0 5.3690952906375955 0.0 28 0.0 0.0 0.0 5.502342326841375 0.0 29 0.0 0.0 0.0 5.647793671165922 0.0 30 0.0 0.0 0.0 5.833159105164123 0.0 31 0.0 0.0 0.0 5.98051112042551 0.0 32 0.0 0.0 0.0 6.139967408495199 0.0 33 0.0 0.0 0.0 6.305125709375409 0.0 34 0.0 0.0 0.0 6.462581291195792 0.0 35 0.0 0.0 0.0 6.6353422758233656 0.0 36 0.0 0.0 0.0 6.801400894515764 0.0 37 0.0 0.0 0.0 6.97666276195497 0.0 38 0.0 0.0 0.0 7.182735505633489 0.0 39 0.0 0.0 0.0 7.4594331799125095 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGTT 30 2.1652158E-6 45.000004 26 CGTTTTT 5965 0.0 42.170998 1 GTTAGCG 45 1.9279469E-8 40.0 1 CGTTAGG 90 0.0 40.0 2 CGTAAGG 175 0.0 39.857143 2 TAGGGCG 465 0.0 39.19355 5 ATACTAT 900 0.0 39.0 45 TATACTA 925 0.0 37.945946 44 GTTGATC 560 0.0 37.76786 16 ATTATAC 935 0.0 37.540104 42 CATCGAA 30 1.1398153E-4 37.500004 24 ATAGTCG 30 1.1398153E-4 37.500004 1 TACGGGT 220 0.0 36.81818 4 AGGGCGA 1235 0.0 36.61943 6 GTAGGGA 960 0.0 36.562504 4 AATGCGG 105 0.0 36.42857 2 CGAATAT 105 0.0 36.42857 14 ACTAATC 1045 0.0 36.387558 10 TATGGGT 365 0.0 36.369865 4 TAAGGGA 1015 0.0 36.35468 4 >>END_MODULE