##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547114_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1532438 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34880301845817 31.0 31.0 33.0 30.0 34.0 2 31.695675779379002 31.0 31.0 34.0 30.0 34.0 3 31.700217561819795 31.0 31.0 34.0 30.0 34.0 4 35.52644283161864 37.0 35.0 37.0 33.0 37.0 5 35.481261884656995 37.0 35.0 37.0 33.0 37.0 6 35.53913698302966 37.0 35.0 37.0 33.0 37.0 7 35.97020956149613 37.0 35.0 37.0 35.0 37.0 8 34.66526280345437 37.0 35.0 37.0 33.0 37.0 9 36.94297779094489 39.0 37.0 39.0 33.0 39.0 10 36.79804207413285 39.0 37.0 39.0 32.0 39.0 11 36.71166533327939 39.0 35.0 39.0 32.0 39.0 12 36.51874659855733 39.0 35.0 39.0 32.0 39.0 13 36.46767503807658 39.0 35.0 39.0 32.0 39.0 14 37.59344521605442 40.0 36.0 41.0 32.0 41.0 15 37.73701252513968 40.0 36.0 41.0 33.0 41.0 16 37.7723150952926 40.0 36.0 41.0 33.0 41.0 17 37.68951174533652 40.0 36.0 41.0 33.0 41.0 18 37.55193228045768 39.0 36.0 41.0 32.0 41.0 19 37.415969194186 39.0 36.0 41.0 32.0 41.0 20 37.197458559498 39.0 35.0 41.0 32.0 41.0 21 37.10052021680485 39.0 35.0 41.0 32.0 41.0 22 37.00323275721432 39.0 35.0 41.0 32.0 41.0 23 36.918632270930374 38.0 35.0 41.0 32.0 41.0 24 36.76674619136304 38.0 35.0 41.0 31.0 41.0 25 36.66545139183445 38.0 35.0 41.0 31.0 41.0 26 36.53620570620149 38.0 35.0 40.0 31.0 41.0 27 36.39360287332995 38.0 35.0 40.0 31.0 41.0 28 36.382838326901314 38.0 35.0 40.0 31.0 41.0 29 36.29618686041458 38.0 35.0 40.0 30.0 41.0 30 36.23219144918098 38.0 35.0 40.0 30.0 41.0 31 36.09469420622563 38.0 35.0 40.0 30.0 41.0 32 35.85692145457108 38.0 35.0 40.0 29.0 41.0 33 35.590694696946954 38.0 35.0 40.0 27.0 41.0 34 35.31067945326336 38.0 35.0 40.0 25.0 41.0 35 35.11663701892018 38.0 34.0 40.0 24.0 41.0 36 34.98081031663271 38.0 34.0 40.0 24.0 41.0 37 34.93877142174757 38.0 34.0 40.0 23.0 41.0 38 34.85187850992993 38.0 34.0 40.0 23.0 41.0 39 34.76169606861746 38.0 34.0 40.0 23.0 41.0 40 34.6333228489505 38.0 34.0 40.0 23.0 41.0 41 34.53465784586391 38.0 34.0 40.0 22.0 41.0 42 34.4521102974476 38.0 34.0 40.0 22.0 41.0 43 34.372151434511544 37.0 34.0 40.0 22.0 41.0 44 34.25236192263569 37.0 33.0 40.0 21.0 41.0 45 34.15888799416355 37.0 33.0 40.0 21.0 41.0 46 34.08303631207266 37.0 33.0 40.0 20.0 41.0 47 34.01397837954945 37.0 33.0 40.0 20.0 41.0 48 33.922586753917614 37.0 33.0 40.0 20.0 41.0 49 33.864168729827895 37.0 33.0 40.0 20.0 41.0 50 33.76859814230657 36.0 33.0 40.0 20.0 41.0 51 33.421990971249734 36.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 5.0 13 11.0 14 13.0 15 46.0 16 106.0 17 338.0 18 771.0 19 1511.0 20 2695.0 21 4170.0 22 6362.0 23 9694.0 24 14696.0 25 23000.0 26 31711.0 27 35023.0 28 34072.0 29 34821.0 30 38480.0 31 45162.0 32 54590.0 33 68809.0 34 104622.0 35 156394.0 36 126629.0 37 153019.0 38 213985.0 39 371433.0 40 268.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.76037138207223 23.681088566062705 26.527990039401267 18.0305500124638 2 35.47216918400614 24.83017257468165 27.071633566904502 12.62602467440771 3 27.2841054581001 23.929777256893917 35.82363527920869 12.962482005797298 4 23.829414305831623 26.90183876933357 35.1150258607526 14.1537210640822 5 20.807562850829857 31.0783209500156 33.87282226099849 14.241293938156064 6 19.816658161700506 39.05358650725184 30.806858091485594 10.322897239562058 7 81.777076788751 3.407707195984438 12.670006877929154 2.145209137335409 8 78.87268522445933 5.8741691344119635 11.819988802157086 3.433156838971626 9 75.40337684134693 5.612559855602641 15.182343429228458 3.801719873821975 10 37.20731279177363 28.994190955849437 20.976835604442073 12.82166064793486 11 29.27739980345045 24.94123742689753 29.728184761797866 16.05317800785415 12 26.918283154032984 22.04787404123364 32.72302044193631 18.31082236279706 13 20.950015596063267 27.53527385773519 34.744439905562245 16.770270640639296 14 18.08171032041753 30.60639321134036 33.35528093143083 17.956615536811277 15 17.0859767246701 25.86225348105437 40.27047097500845 16.781298819267075 16 18.43415524804266 23.772185236857872 39.51859716347415 18.27506235162532 17 18.90464736583144 24.756368610018807 32.77881389002361 23.560170134126142 18 20.16218600687271 25.710142922584794 34.49457661582394 19.63309445471856 19 23.481602518340054 27.925893249841106 29.724921987055918 18.86758224476292 20 24.70807954383799 25.6593741476001 29.84342596568344 19.789120342878473 21 21.913056188896384 28.548300159614943 30.957141496099677 18.581502155388996 22 21.63669916825346 25.690435763143437 30.288859973454063 22.384005095149035 23 19.711074771051095 29.014681181228863 29.77373309719545 21.50051095052459 24 19.66663577906578 26.128691666481775 35.51497678862049 18.689695765831964 25 19.760538436139015 27.13617125130022 32.674470353776144 20.42881995878463 26 18.86588560189711 29.86567808942352 30.834656932286986 20.433779376392387 27 19.83975860687349 28.33706812282128 30.931561342122816 20.891611928182414 28 18.65667648544346 27.748920347837892 33.83667071685771 19.75773244986094 29 18.330660033228096 25.204021304613956 33.907081395788936 22.558237266369012 30 19.521964347007838 27.20057842470625 32.40718384691583 20.870273381370076 31 21.98992716181666 26.183245260167133 30.266999382683018 21.55982819533319 32 22.293430468312582 26.161319413901246 29.91135693581078 21.633893181975388 33 21.118179006263222 26.444724027986776 31.144685788266802 21.2924111774832 34 18.138939389391282 26.560944064294933 31.448450116742084 23.8516664295717 35 18.687738100986795 25.988261841588372 32.199149329369284 23.124850728055556 36 21.38252901585578 26.59076582543633 30.611091606968767 21.415613551739124 37 19.45109687961275 28.435016620574537 30.375649781589857 21.738236718222858 38 19.12749488070643 28.890238952571 30.642675266470814 21.339590900251757 39 19.67146468568386 28.744327666111126 28.431231801873874 23.152975846331138 40 21.433493557324994 26.799844430900304 29.790830036843253 21.97583197493145 41 18.469523726245367 26.510958355248306 29.67284810217444 25.346669816331886 42 20.411135719683276 28.135885432232822 27.587869786575382 23.865109061508523 43 20.25093347985367 27.012512088580422 29.960168045950308 22.776386385615602 44 20.559069926483158 28.778130012437696 28.616492151721634 22.046307909357505 45 19.34479567852011 29.305002877767322 27.83075073836592 23.519450705346646 46 21.064930522474647 28.960910653481577 28.00211166781299 21.97204715623079 47 20.816698620107307 27.15535636678286 29.141668374185446 22.88627663892438 48 20.47260639582156 25.7062928483893 30.75648084946993 23.064619906319212 49 20.250672457874316 25.723128766057744 30.26823923708496 23.75795953898298 50 18.49399453680997 27.748659325858533 31.144359510792608 22.612986626538888 51 18.557227111308908 28.124269954151487 29.253320525854882 24.065182408684723 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1373.0 1 1711.5 2 2050.0 3 18870.0 4 35690.0 5 23544.0 6 11398.0 7 11804.5 8 12211.0 9 13373.5 10 14536.0 11 15681.5 12 16827.0 13 17210.5 14 17594.0 15 16932.0 16 16270.0 17 15827.0 18 15384.0 19 14360.0 20 13336.0 21 12655.5 22 11975.0 23 11681.0 24 11387.0 25 12042.0 26 13916.5 27 15136.0 28 16743.5 29 18351.0 30 20875.0 31 23399.0 32 25830.5 33 28262.0 34 33170.0 35 38078.0 36 41490.5 37 44903.0 38 50207.0 39 55511.0 40 66671.5 41 77832.0 42 87149.0 43 96466.0 44 106140.0 45 115814.0 46 126631.0 47 137448.0 48 140775.5 49 144103.0 50 133289.0 51 122475.0 52 107942.0 53 93409.0 54 83074.0 55 72739.0 56 67369.5 57 62000.0 58 57259.5 59 52519.0 60 46609.0 61 40699.0 62 36950.0 63 33201.0 64 27870.5 65 22540.0 66 19094.5 67 15649.0 68 13060.5 69 10472.0 70 8748.5 71 7025.0 72 5788.0 73 4551.0 74 3910.5 75 2537.5 76 1805.0 77 1478.5 78 1152.0 79 826.0 80 500.0 81 351.5 82 203.0 83 151.0 84 99.0 85 81.5 86 64.0 87 40.5 88 17.0 89 11.5 90 6.0 91 6.0 92 6.0 93 4.5 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1532438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.313653658889365 #Duplication Level Percentage of deduplicated Percentage of total 1 77.09751297095303 26.454973580470124 2 7.745294795738383 5.315387262139303 3 3.2255094217377227 3.3203703951297814 4 1.9414279174990425 2.6646994065904392 5 1.299169065534104 2.228961867954009 6 0.9654725901894022 1.9877335246145984 7 0.7903862384938074 1.8984727751100186 8 0.6400902524911252 1.7571068187529209 9 0.5366858563891259 1.6574087339784813 >10 5.343754098471668 39.40753483024507 >50 0.37626543260029505 8.072301536426385 >100 0.0341395361146467 1.9288791885114878 >500 0.0019508289943886896 0.458338662447651 >1k 0.0021459118938275588 1.1664307277859383 >5k 0.0 0.0 >10k+ 1.95082899438869E-4 1.6814006898437415 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25118 1.6390875193645682 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTT 2702 0.17632034705482377 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTC 2305 0.15041391560376344 TruSeq Adapter, Index 10 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 1993 0.13005420121401323 TruSeq Adapter, Index 10 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1685 0.1099555088036188 RNA PCR Primer, Index 10 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.525549483894292E-5 0.0 0.0 0.13918997049146523 0.0 2 6.525549483894292E-5 0.0 0.0 0.4148291806911601 0.0 3 6.525549483894292E-5 0.0 0.0 0.6866835721901963 0.0 4 6.525549483894292E-5 0.0 0.0 1.0932253050368106 0.0 5 6.525549483894292E-5 0.0 0.0 1.8544959078279186 0.0 6 6.525549483894292E-5 0.0 0.0 3.2272104972599216 0.0 7 6.525549483894292E-5 0.0 0.0 3.9496540806218587 0.0 8 6.525549483894292E-5 0.0 0.0 5.416271327127101 0.0 9 6.525549483894292E-5 0.0 0.0 6.12129169336704 0.0 10 6.525549483894292E-5 0.0 0.0 7.045505266770989 0.0 11 6.525549483894292E-5 0.0 0.0 7.748045924207048 0.0 12 6.525549483894292E-5 0.0 0.0 8.336324210180118 0.0 13 6.525549483894292E-5 0.0 0.0 8.678458769620695 0.0 14 6.525549483894292E-5 0.0 0.0 8.865024229365234 0.0 15 6.525549483894292E-5 0.0 0.0 9.024443403256772 0.0 16 6.525549483894292E-5 0.0 0.0 9.295188451343545 0.0 17 6.525549483894292E-5 0.0 0.0 9.603455408962711 0.0 18 6.525549483894292E-5 0.0 0.0 10.030161089714559 0.0 19 6.525549483894292E-5 0.0 0.0 10.25738072274376 6.525549483894292E-5 20 6.525549483894292E-5 0.0 0.0 10.499739630575593 6.525549483894292E-5 21 6.525549483894292E-5 0.0 0.0 10.781773879269505 6.525549483894292E-5 22 6.525549483894292E-5 0.0 0.0 11.087169595115757 6.525549483894292E-5 23 1.3051098967788584E-4 0.0 0.0 11.432110140834409 6.525549483894292E-5 24 1.3051098967788584E-4 0.0 0.0 11.711403658745084 6.525549483894292E-5 25 1.3051098967788584E-4 0.0 0.0 11.943974242351077 6.525549483894292E-5 26 1.3051098967788584E-4 0.0 0.0 12.171781174833827 6.525549483894292E-5 27 1.3051098967788584E-4 0.0 0.0 12.402394093594651 6.525549483894292E-5 28 1.3051098967788584E-4 0.0 0.0 12.634834166210966 6.525549483894292E-5 29 1.9576648451682873E-4 0.0 0.0 12.889983151031233 6.525549483894292E-5 30 1.9576648451682873E-4 0.0 0.0 13.212802083999483 6.525549483894292E-5 31 1.9576648451682873E-4 0.0 0.0 13.46416625011909 6.525549483894292E-5 32 1.9576648451682873E-4 0.0 0.0 13.719184723949681 6.525549483894292E-5 33 1.9576648451682873E-4 0.0 0.0 13.96917852467767 6.525549483894292E-5 34 1.9576648451682873E-4 0.0 0.0 14.21558327318952 6.525549483894292E-5 35 1.9576648451682873E-4 0.0 0.0 14.491091972399536 6.525549483894292E-5 36 1.9576648451682873E-4 0.0 0.0 14.758835267723718 6.525549483894292E-5 37 1.9576648451682873E-4 0.0 0.0 15.013070675616241 6.525549483894292E-5 38 1.9576648451682873E-4 0.0 0.0 15.278334262136543 6.525549483894292E-5 39 1.9576648451682873E-4 0.0 0.0 15.55886763444916 6.525549483894292E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCGA 20 7.034023E-4 45.000004 35 CGACGGT 85 0.0 45.0 28 ACGTTAG 55 1.8189894E-12 45.0 1 CTCGTAG 30 2.165978E-6 44.999996 1 CGTTTTT 13060 0.0 43.2255 1 CGGTCTA 90 0.0 42.5 31 ACGGGTA 190 0.0 40.263157 5 GCGATAC 160 0.0 39.375004 9 CGTTAGG 225 0.0 39.000004 2 CCCGCGA 35 6.2496547E-6 38.571426 29 GCGATAT 130 0.0 38.07692 9 GGGCGAT 3010 0.0 37.74917 7 CATACGA 310 0.0 37.741936 18 TAGGGAC 1230 0.0 37.682926 5 AGGGCGA 1620 0.0 37.638885 6 ACGGGAT 425 0.0 37.588234 5 GGCGATT 850 0.0 37.588234 8 GTTTTTT 14865 0.0 37.280525 2 TCACGAC 110 0.0 36.81818 25 TAGGGCG 595 0.0 36.68067 5 >>END_MODULE