FastQCFastQC Report
Thu 26 May 2016
SRR1547108_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1547108_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences954048
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44070.4619264439525056No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC15450.16194153753270277No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTTA207.0326845E-445.015
CGGGTAC850.045.06
GACCGTA253.890306E-545.09
GTTAGCG207.0326845E-445.01
CTCGGTT207.0326845E-445.019
CTACGTT207.0326845E-445.030
TGATTCG551.8189894E-1245.015
TGTTACG351.2116288E-745.01
GCTAGCG253.890306E-545.01
CCGACGG207.0326845E-445.02
CGTAACA207.0326845E-445.033
CCGAAAC253.890306E-545.044
ACCAACG207.0326845E-445.021
GCTCGTC253.890306E-545.09
TCGGTCA207.0326845E-445.022
GCGTAAC700.045.032
TCGCGAG207.0326845E-445.01
ACGCGTA207.0326845E-445.023
AATACGG1000.042.752
CGCATCG750.042.00000421