##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547107_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1157258 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.411909012510606 31.0 31.0 33.0 30.0 34.0 2 31.770877367017555 31.0 31.0 34.0 30.0 34.0 3 31.743781421256106 31.0 31.0 34.0 30.0 34.0 4 35.58456886882614 37.0 35.0 37.0 33.0 37.0 5 35.53843568158526 37.0 35.0 37.0 33.0 37.0 6 35.60151150391702 37.0 35.0 37.0 33.0 37.0 7 36.02025218231371 37.0 35.0 37.0 35.0 37.0 8 34.727081601509774 37.0 35.0 37.0 33.0 37.0 9 37.02634589693914 39.0 37.0 39.0 34.0 39.0 10 36.8763646481597 39.0 37.0 39.0 32.0 39.0 11 36.7721026771904 39.0 37.0 39.0 32.0 39.0 12 36.55254835136158 39.0 35.0 39.0 32.0 39.0 13 36.5027487388292 39.0 35.0 39.0 32.0 39.0 14 37.615664786936016 40.0 36.0 41.0 32.0 41.0 15 37.772278955945865 40.0 36.0 41.0 33.0 41.0 16 37.795020643624845 40.0 36.0 41.0 33.0 41.0 17 37.70757687568373 40.0 36.0 41.0 33.0 41.0 18 37.55181817710485 39.0 36.0 41.0 33.0 41.0 19 37.39367712299245 39.0 36.0 41.0 32.0 41.0 20 37.169859270793545 39.0 35.0 41.0 32.0 41.0 21 37.08172680594993 39.0 35.0 41.0 32.0 41.0 22 36.992160780050774 38.0 35.0 41.0 32.0 41.0 23 36.90379500508962 38.0 35.0 41.0 32.0 41.0 24 36.760082885579536 38.0 35.0 41.0 31.0 41.0 25 36.663225486451594 38.0 35.0 40.0 31.0 41.0 26 36.54802559152756 38.0 35.0 40.0 31.0 41.0 27 36.43595032395542 38.0 35.0 40.0 31.0 41.0 28 36.4234120654167 38.0 35.0 40.0 31.0 41.0 29 36.37567681536874 38.0 35.0 40.0 31.0 41.0 30 36.27102945064973 38.0 35.0 40.0 31.0 41.0 31 36.0798205758785 38.0 35.0 40.0 30.0 41.0 32 35.81447093042347 38.0 35.0 40.0 29.0 41.0 33 35.45194502867986 38.0 35.0 40.0 27.0 41.0 34 35.105544312504215 38.0 34.0 40.0 24.0 41.0 35 34.84089718973643 38.0 34.0 40.0 23.0 41.0 36 34.669442769028166 38.0 34.0 40.0 22.0 41.0 37 34.60768471680472 38.0 34.0 40.0 22.0 41.0 38 34.51278107388327 38.0 34.0 40.0 21.0 41.0 39 34.422488330173564 38.0 34.0 40.0 21.0 41.0 40 34.30631026097897 38.0 34.0 40.0 20.0 41.0 41 34.21934175438839 38.0 34.0 40.0 20.0 41.0 42 34.14480176417013 37.0 33.0 40.0 19.0 41.0 43 34.05602380800133 37.0 33.0 40.0 18.0 41.0 44 33.94834168353125 37.0 33.0 40.0 18.0 41.0 45 33.837648994433394 37.0 33.0 40.0 18.0 41.0 46 33.767033798859025 37.0 33.0 40.0 18.0 41.0 47 33.698572833369916 37.0 33.0 40.0 18.0 41.0 48 33.59957157349528 36.0 33.0 40.0 18.0 41.0 49 33.52861937441781 36.0 33.0 40.0 18.0 41.0 50 33.43239709727649 36.0 33.0 40.0 18.0 41.0 51 33.072037523179795 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 3.0 13 6.0 14 13.0 15 48.0 16 96.0 17 250.0 18 607.0 19 1265.0 20 2178.0 21 3420.0 22 5199.0 23 8002.0 24 12026.0 25 19018.0 26 26474.0 27 29149.0 28 27106.0 29 27010.0 30 28618.0 31 32960.0 32 39733.0 33 50573.0 34 79703.0 35 118651.0 36 92139.0 37 112848.0 38 160871.0 39 279113.0 40 177.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.111313121188186 24.191666853890837 27.160062838191656 19.53695718672932 2 36.696484275762195 23.712776234858605 27.842451726408456 11.748287762970747 3 26.923641919088055 23.9191260721464 36.6215658046866 12.535666204078952 4 23.344232660305654 26.706922743243076 36.37667659242796 13.572168004023302 5 21.08492661100636 30.443773125785263 35.094507879833195 13.376792383375186 6 19.657155102837915 38.94827255460753 31.67616901330559 9.718403329248966 7 82.13285196559454 3.200150701053698 13.070724073629217 1.5962732597225509 8 80.04878773791151 5.463345252311931 12.205316359878264 2.282550649898294 9 77.29849350792996 4.778450440610477 14.881383408021376 3.041672643438196 10 38.237627218822425 27.4003722592542 21.42832453955816 12.933675982365212 11 29.71083371210223 23.980305169633738 30.42605883908342 15.882802279180616 12 26.749955498255357 21.73681236163414 33.5257997784418 17.987432361668702 13 21.364985163204746 26.7494370313275 35.31425144609067 16.57132635937708 14 18.905550879751964 29.719388416411896 34.27187368763059 17.10318701620555 15 18.010158495339844 24.221478702242717 41.184766059081035 16.583596743336404 16 19.710125140634155 22.55832320882638 40.12294579082625 17.60860585971322 17 20.23809729550368 22.921941347564676 33.381061094414555 23.458900262517087 18 21.243491079776504 24.379956759858217 35.822176213083 18.554375947282285 19 24.009166495284543 26.123128982474093 31.51881430070045 18.348890221540916 20 25.198875272411165 25.172433459090364 30.89034597298096 18.738345295517508 21 22.870785944015942 26.938591048841314 32.562747459944106 17.627875547198638 22 22.171978936416945 24.316530972350158 32.29331747976683 21.21817261146607 23 20.02129170850407 27.950292847403084 31.32283380196983 20.70558164212302 24 20.137169066880507 25.938122700383147 35.91411768162329 18.01059055111306 25 20.5919509737673 26.064887864244618 34.23307507919582 19.110086082792254 26 18.876257498327945 28.94315701425266 32.112718166562686 20.067867320856713 27 19.664240817518653 27.629361819058502 33.0824241439679 19.623973219454953 28 18.891638683854424 27.2595220771859 35.550326720575704 18.298512518383973 29 19.488394117819883 25.516004209951454 34.93663470030019 20.05896697192847 30 20.946927997041282 26.987845406987898 33.511628349080326 18.553598246890495 31 23.737921880859755 26.644015422662882 30.57459961391496 19.0434630825624 32 25.126030669047005 26.555616811462958 30.17676265793799 18.14158986155205 33 23.975984611901584 27.227895594586514 29.406580036603764 19.38953975690814 34 21.37578655753514 27.786111653581138 30.580129927812123 20.257971861071603 35 21.25074961676653 27.354919991911913 31.002853296326315 20.39147709499524 36 24.541286385576942 27.97967263998175 28.147915158071925 19.331125816369383 37 21.4592597329204 29.759137547547738 29.71748737100975 19.064115348522108 38 21.49373778362301 30.512642816035836 27.879262878286433 20.11435652205472 39 20.975702911537443 30.113423281584573 28.174356971392722 20.736516835485258 40 22.047546873730838 27.682331856854738 28.97677095340883 21.293350316005593 41 19.74641782558427 27.474426618783365 29.12790406287967 23.651251492752696 42 21.248762160209736 28.754089407893485 27.57777435973655 22.419374072160227 43 21.034548907849416 27.93326984993839 29.22399326684283 21.808187975369364 44 21.50808203529377 28.88482948486854 28.80213400987507 20.80495446996262 45 20.123688926756177 29.89592640534781 28.04266637171659 21.93771829617942 46 21.814063933885098 28.9753019637799 28.29766568906847 20.91296841326653 47 21.582395628286864 27.60784544155236 29.183898491088417 21.62586043907236 48 21.839295991040892 27.01601544340156 29.69510688195718 21.44958168360037 49 21.24418236901365 26.347452339927656 30.323488798522025 22.08487649253667 50 20.578557244797615 28.152408538113367 29.861534765799846 21.40749945128917 51 19.628639421805683 29.0123723491218 28.956291509758415 22.402696719314104 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 969.0 1 1243.0 2 1517.0 3 15229.5 4 28942.0 5 19655.0 6 10368.0 7 10370.5 8 10373.0 9 11452.0 10 12531.0 11 13109.5 12 13688.0 13 13750.0 14 13812.0 15 13555.0 16 13298.0 17 12592.0 18 11886.0 19 11129.5 20 10373.0 21 9916.0 22 9459.0 23 9235.0 24 9011.0 25 9226.0 26 10625.5 27 11810.0 28 13188.0 29 14566.0 30 15920.0 31 17274.0 32 20221.0 33 23168.0 34 26597.0 35 30026.0 36 32101.0 37 34176.0 38 37878.5 39 41581.0 40 48889.5 41 56198.0 42 65239.5 43 74281.0 44 79002.5 45 83724.0 46 89477.5 47 95231.0 48 96435.0 49 97639.0 50 93212.0 51 88785.0 52 79812.5 53 70840.0 54 64520.5 55 58201.0 56 53851.0 57 49501.0 58 45406.5 59 41312.0 60 37051.5 61 32791.0 62 28460.0 63 24129.0 64 21951.5 65 19774.0 66 16653.5 67 13533.0 68 11060.5 69 8588.0 70 6948.0 71 5308.0 72 4654.5 73 4001.0 74 3283.0 75 2007.0 76 1449.0 77 1032.0 78 615.0 79 456.5 80 298.0 81 220.5 82 143.0 83 95.0 84 47.0 85 29.0 86 11.0 87 14.5 88 18.0 89 10.0 90 2.0 91 2.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1157258.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.88015038337153 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9107061412901 27.59567702440785 2 7.465419712335494 5.357207639071675 3 3.253524105585432 3.5021080255298895 4 1.9695346692164901 2.8266880046700624 5 1.4413340633675318 2.585764147315149 6 1.0827332478351277 2.330917905444039 7 0.8349483295452211 2.097065013849917 8 0.7235261416548899 2.0768181415102416 9 0.5678533047645938 1.8337195773583317 >10 5.514137865538468 41.243714539945124 >50 0.21332231363204282 4.7178224246256475 >100 0.01999751102636388 1.307646574718946 >500 0.0022219456561542363 0.5985481557153712 >1k 4.937657013676082E-4 0.24377749364047677 >5k 0.0 0.0 >10k+ 2.468828506838041E-4 1.6825253321973894 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18994 1.641293471291622 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTT 1503 0.12987596542862526 No Hit CGTTCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC 1249 0.10792753214927009 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.592334639293917E-4 0.0 0.0 0.06454913251841854 0.0 2 2.592334639293917E-4 0.0 0.0 0.19036377367881666 0.0 3 2.592334639293917E-4 0.0 0.0 0.3698397418725988 0.0 4 2.592334639293917E-4 0.0 0.0 0.580423725737908 0.0 5 2.592334639293917E-4 0.0 0.0 0.9909631214474214 0.0 6 2.592334639293917E-4 0.0 0.0 1.8281143876300703 0.0 7 2.592334639293917E-4 0.0 0.0 2.285402218001517 0.0 8 3.456446185725223E-4 0.0 0.0 3.192546519445102 0.0 9 3.456446185725223E-4 0.0 0.0 3.700471286437424 0.0 10 3.456446185725223E-4 0.0 0.0 4.354517315931279 0.0 11 3.456446185725223E-4 0.0 0.0 4.874453233418995 0.0 12 3.456446185725223E-4 0.0 0.0 5.30573130624286 0.0 13 3.456446185725223E-4 0.0 0.0 5.5621996132236715 0.0 14 3.456446185725223E-4 0.0 0.0 5.7091849872716365 0.0 15 3.456446185725223E-4 0.0 0.0 5.838196841153831 0.0 16 3.456446185725223E-4 0.0 0.0 6.031066538317298 0.0 17 3.456446185725223E-4 0.0 0.0 6.266796168183759 0.0 18 3.456446185725223E-4 0.0 0.0 6.5688031536614995 0.0 19 3.456446185725223E-4 0.0 0.0 6.736440793669173 0.0 20 3.456446185725223E-4 0.0 0.0 6.911336970666869 0.0 21 3.456446185725223E-4 0.0 0.0 7.119501442202171 0.0 22 3.456446185725223E-4 0.0 0.0 7.348058946233252 0.0 23 3.456446185725223E-4 0.0 0.0 7.608156521709074 0.0 24 4.3205577321565284E-4 0.0 0.0 7.819518205966172 0.0 25 4.3205577321565284E-4 0.0 0.0 7.996229017211374 0.0 26 4.3205577321565284E-4 0.0 0.0 8.1625704898994 0.0 27 4.3205577321565284E-4 0.0 0.0 8.3518973297225 0.0 28 4.3205577321565284E-4 0.0 0.0 8.532237409462713 0.0 29 4.3205577321565284E-4 0.0 0.0 8.729686897822265 0.0 30 4.3205577321565284E-4 0.0 0.0 8.997215832597398 0.0 31 4.3205577321565284E-4 0.0 0.0 9.203392847575907 0.0 32 4.3205577321565284E-4 0.0 0.0 9.406804705605838 0.0 33 4.3205577321565284E-4 0.0 0.0 9.616956633697932 0.0 34 4.3205577321565284E-4 0.0 0.0 9.831515530676825 0.0 35 4.3205577321565284E-4 0.0 0.0 10.066985927079354 0.0 36 4.3205577321565284E-4 0.0 0.0 10.298654232677588 0.0 37 4.3205577321565284E-4 0.0 0.0 10.519348321636143 0.0 38 4.3205577321565284E-4 0.0 0.0 10.763114188884416 0.0 39 4.3205577321565284E-4 0.0 0.0 11.0431727410828 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGCG 35 1.211938E-7 45.000004 1 CGTAACT 35 1.211938E-7 45.000004 33 CGCGTAA 35 1.211938E-7 45.000004 31 GCGTAAC 35 1.211938E-7 45.000004 32 CGTTTTT 11350 0.0 43.770924 1 TAGCACG 40 3.4582445E-7 39.375 1 GCGATCG 80 0.0 39.375 9 GTTTTTT 12595 0.0 38.693928 2 ACGCTAG 35 6.248325E-6 38.57143 1 TTCGTAG 65 9.094947E-12 38.07692 1 CTATCGA 30 1.1399268E-4 37.499996 41 TATTACG 30 1.1399268E-4 37.499996 1 TAAGGGA 1260 0.0 37.142857 4 TAGGGAT 1370 0.0 37.116787 5 ATAACGG 85 0.0 37.058826 2 GACCGAT 765 0.0 37.058823 9 TCAGACG 195 0.0 36.923077 22 CATACGA 165 0.0 36.81818 18 CGACCCG 160 0.0 36.5625 32 GCGTAAG 105 0.0 36.42857 1 >>END_MODULE