SRR1547103_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547103_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	544327
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2698	0.49565794090684456	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1449	0.266200280346189	No Hit
GAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCT	713	0.13098743953542633	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTT	649	0.11922980120405566	No Hit
AAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCT	575	0.10563503188340832	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCAGT	35	1.2103555E-7	45.000004	10
CGACAGG	35	1.2103555E-7	45.000004	2
ACGGGAT	45	3.8380676E-10	45.000004	5
TATTCCG	35	1.2103555E-7	45.000004	1
AACGTTG	20	7.03001E-4	45.0	1
GCCCCAC	20	7.03001E-4	45.0	26
CTAGACG	20	7.03001E-4	45.0	1
TCGTTTA	25	3.8880906E-5	45.0	16
TCGCAAG	25	3.8880906E-5	45.0	1
AAATCCG	20	7.03001E-4	45.0	1
CGAACAC	20	7.03001E-4	45.0	36
CGTATTG	25	3.8880906E-5	45.0	40
AATCACG	25	3.8880906E-5	45.0	38
AGTCACG	40	6.8030204E-9	45.0	1
GTCCTAT	20	7.03001E-4	45.0	17
CAACCGT	20	7.03001E-4	45.0	5
GTTAGTC	25	3.8880906E-5	45.0	35
TTCGTGC	20	7.03001E-4	45.0	14
TAACGAG	20	7.03001E-4	45.0	1
AATATTG	20	7.03001E-4	45.0	24