SRR1547102_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547102_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	628376
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3394	0.5401224744420537	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1454	0.23139012311100363	No Hit
GAGCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTTCT	766	0.12190153665957962	No Hit
AAGCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTTCT	673	0.1071014806421633	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	656	0.1043960940583345	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTT	635	0.10105414592536952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	25	3.8887792E-5	45.000004	1
CTAGACG	30	2.1639244E-6	45.000004	1
TTAGACG	25	3.8887792E-5	45.000004	1
TGGCGTA	30	2.1639244E-6	45.000004	19
CAGCACG	30	2.1639244E-6	45.000004	1
AATGCGG	120	0.0	45.000004	2
TACGAAT	30	2.1639244E-6	45.000004	12
AGTTATG	60	0.0	45.000004	1
TATAGCG	30	2.1639244E-6	45.000004	1
GCATCGA	25	3.8887792E-5	45.000004	9
TAGTATG	55	1.8189894E-12	45.000004	1
TAGTAAG	45	3.8380676E-10	45.000004	1
CTTACGA	25	3.8887792E-5	45.000004	35
ATTTACG	20	7.0308434E-4	45.0	1
AGGTACG	20	7.0308434E-4	45.0	1
CGAACAG	20	7.0308434E-4	45.0	35
CAACGTT	20	7.0308434E-4	45.0	42
ACGTTAT	20	7.0308434E-4	45.0	44
GCAACTA	20	7.0308434E-4	45.0	26
GTTTACG	35	1.2107557E-7	45.0	1