SRR1547090_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547090_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	870285
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5051	0.5803845866583935	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	962	0.11053850175517216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	25	3.890022E-5	45.0	1
ATTCGAC	20	7.032341E-4	45.0	38
ACGGGAT	210	0.0	42.857143	5
TCGATAG	50	1.0804797E-9	40.5	1
ATAGGGC	440	0.0	39.375	4
CGTTTTT	2960	0.0	39.298985	1
CGTTAGG	225	0.0	39.0	2
CAATTGC	35	6.2465406E-6	38.571426	25
ATCGTAG	35	6.2465406E-6	38.571426	1
GCGATCG	35	6.2465406E-6	38.571426	9
CGTACAT	35	6.2465406E-6	38.571426	35
TCGTACA	35	6.2465406E-6	38.571426	34
CTAATGG	100	0.0	38.25	2
TAGTAGG	400	0.0	38.25	2
AACACGT	430	0.0	38.197674	41
CACGTGA	425	0.0	38.11765	43
ATTAGCG	65	9.094947E-12	38.076927	1
ACGACCA	455	0.0	38.076923	28
CGGGTAT	95	0.0	37.894737	6
AGGGCGA	975	0.0	37.846153	6