##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547089_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1329812 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.420065392702128 31.0 31.0 33.0 30.0 34.0 2 31.794573969854387 31.0 31.0 34.0 30.0 34.0 3 31.901888387230677 31.0 31.0 34.0 30.0 34.0 4 35.66441045801963 37.0 35.0 37.0 33.0 37.0 5 35.60091802450271 37.0 35.0 37.0 33.0 37.0 6 35.64594844985607 37.0 35.0 37.0 33.0 37.0 7 36.041033619789864 37.0 35.0 37.0 35.0 37.0 8 34.74657319982072 37.0 35.0 37.0 35.0 37.0 9 37.03396871136672 39.0 37.0 39.0 34.0 39.0 10 36.7343940346455 39.0 37.0 39.0 32.0 39.0 11 36.77754750295531 39.0 37.0 39.0 32.0 39.0 12 36.55772319696318 39.0 35.0 39.0 32.0 39.0 13 36.4809709943962 39.0 35.0 39.0 32.0 39.0 14 37.602025699873366 40.0 36.0 41.0 33.0 41.0 15 37.75666936378977 40.0 36.0 41.0 33.0 41.0 16 37.789510096163966 40.0 36.0 41.0 33.0 41.0 17 37.6902441848923 40.0 36.0 41.0 33.0 41.0 18 37.62974315166354 39.0 36.0 41.0 33.0 41.0 19 37.57944656838711 39.0 36.0 41.0 33.0 41.0 20 37.44667516912165 39.0 35.0 41.0 32.0 41.0 21 37.35581345333024 39.0 35.0 41.0 32.0 41.0 22 37.268978622542136 39.0 35.0 41.0 32.0 41.0 23 37.196133739205244 39.0 35.0 41.0 32.0 41.0 24 37.06845403711201 39.0 35.0 41.0 32.0 41.0 25 36.9923853898145 39.0 35.0 41.0 32.0 41.0 26 36.89507614610186 39.0 35.0 41.0 31.0 41.0 27 36.788024171837826 39.0 35.0 41.0 31.0 41.0 28 36.8127419514939 39.0 35.0 41.0 31.0 41.0 29 36.79403479589596 39.0 35.0 41.0 31.0 41.0 30 36.73394284304849 39.0 35.0 41.0 31.0 41.0 31 36.63650049781473 39.0 35.0 41.0 31.0 41.0 32 36.55158774322987 39.0 35.0 41.0 31.0 41.0 33 36.39926997199604 39.0 35.0 41.0 30.0 41.0 34 36.26106096200064 39.0 35.0 41.0 30.0 41.0 35 36.13525069709102 39.0 35.0 41.0 30.0 41.0 36 36.01082559038421 39.0 35.0 41.0 29.0 41.0 37 35.97612970856031 39.0 35.0 41.0 29.0 41.0 38 35.88720210074808 38.0 35.0 41.0 29.0 41.0 39 35.81887289331124 38.0 35.0 41.0 29.0 41.0 40 35.69178124426611 38.0 35.0 41.0 28.0 41.0 41 35.6103133375244 38.0 35.0 41.0 27.0 41.0 42 35.554304668629854 38.0 35.0 41.0 27.0 41.0 43 35.46280978063064 38.0 35.0 40.0 27.0 41.0 44 35.362170742932086 38.0 35.0 40.0 27.0 41.0 45 35.233482627619544 38.0 34.0 40.0 26.0 41.0 46 35.16736576298003 38.0 34.0 40.0 26.0 41.0 47 35.09894857318177 38.0 34.0 40.0 26.0 41.0 48 35.01742426749044 38.0 34.0 40.0 26.0 41.0 49 34.966729131636654 37.0 34.0 40.0 26.0 41.0 50 34.86789034841015 37.0 34.0 40.0 26.0 41.0 51 34.50996531840591 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 1.0 11 3.0 12 2.0 13 6.0 14 15.0 15 24.0 16 92.0 17 219.0 18 522.0 19 1039.0 20 1797.0 21 2879.0 22 4310.0 23 6380.0 24 9542.0 25 13962.0 26 18147.0 27 21281.0 28 22653.0 29 25499.0 30 29314.0 31 35397.0 32 43971.0 33 56651.0 34 90952.0 35 138721.0 36 100584.0 37 131147.0 38 200812.0 39 373657.0 40 231.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.727332886152325 24.266888853461992 28.298736964322774 14.707041296062902 2 32.067765969926576 25.841397129819853 28.821442429456194 13.269394470797376 3 28.869043142940505 25.5039058152581 31.923760651881622 13.703290389919779 4 24.982177931918194 28.61020956345709 31.592661218277474 14.814951286347245 5 22.83405473856455 32.35231747043943 30.38933322905794 14.424294561938078 6 20.860392296053877 40.8911184438101 27.51689712530794 10.731592134828082 7 88.42949228913561 3.308663179456946 6.938800371781875 1.323044159625571 8 86.31107254258497 5.3936947478290165 6.160795661341603 2.1344370482444135 9 82.96984836954397 4.306698992037973 9.759650236274 2.9638024021440628 10 36.62683146189085 24.303886564416626 25.57872842176187 13.490553551930647 11 33.03760230769462 25.432767940129885 24.64055069438387 16.88907905779163 12 30.02055929710365 24.118296420847457 27.190535203472372 18.67060907857652 13 22.933392088505745 30.39910904699311 29.062153146459803 17.605345718041345 14 20.340619576301012 32.25628885887629 29.445816401115344 17.95727516370735 15 20.03576445392281 25.138741416079867 37.28820314450464 17.53729098549269 16 21.290001895004707 22.796906630410916 37.00823875856136 18.904852716023015 17 20.875582413153136 23.886308741386 30.136214743136623 25.10189410232424 18 23.112139159520293 24.113333313280375 32.002042393962455 20.772485133236877 19 26.093237239549648 26.867331622815854 27.01291611145034 20.026515026184153 20 27.033821322111695 26.251379894300847 26.898689438807892 19.816109344779562 21 24.38758260566155 27.70895434843422 29.141487668933653 18.76197537697058 22 23.84359593686927 24.5076747690651 28.404992585418086 23.24373670864754 23 22.046048614390607 28.547117938475512 27.386352356573713 22.02048109056017 24 20.985297169825508 26.869286786402892 33.24387206612664 18.90154397764496 25 21.595834599176424 26.796870535083155 30.84014883306813 20.767146032672287 26 20.119159700769732 30.085305291274256 28.13909033758155 21.65644467037446 27 20.47770662319185 28.762336330248182 29.102685191590993 21.657271854968975 28 19.330175994802275 28.956950305757506 32.637019368151286 19.075854331288934 29 20.061707970750753 26.19625932086641 32.120329790977976 21.621702917404868 30 22.377900033989768 26.926813715021368 30.9729495597874 19.722336691201463 31 24.55790743353196 26.890643188661258 28.243541192288834 20.307908185517952 32 25.472623197865563 26.129633361708272 28.346788869404094 20.05095457102207 33 23.69688346924227 27.141956908194544 27.841529479354975 21.31963014320821 34 20.936418080149675 27.50343657599721 29.64336312200522 21.9167822218479 35 21.25503454623661 27.876572026722574 29.38986864308639 21.478524783954423 36 25.089862326404035 27.088189909551126 27.04961302800697 20.772334736037877 37 21.280602070067047 29.83120922355942 28.32603405594174 20.56215465043179 38 22.3680490174551 29.236989890300286 27.276938394299343 21.118022697945275 39 21.54943706328413 28.903709697310596 26.61030280972047 22.9365504296848 40 23.465647775775825 26.812361446580418 28.07050921483638 21.651481562807373 41 20.518614661320548 26.213254204353696 28.152099695295274 25.11603143903048 42 22.9955061316938 27.52719933343961 26.439902783250563 23.037391751616017 43 21.932348331944667 26.840184928395892 28.488087037867004 22.739379701792434 44 21.77668723097701 28.346864068003597 27.820248275696112 22.056200425323276 45 20.540271857976915 29.40039644701657 27.023519113980022 23.03581258102649 46 23.02859351547437 28.277530959263412 27.29889638535372 21.3949791399085 47 22.50994877471402 27.51246040793736 28.12134346809925 21.856247349249365 48 22.598307129128024 26.032627168351617 29.369264226823038 21.999801475697318 49 21.360387784137906 25.853955295936572 29.717584139712983 23.068072780212542 50 20.988455511004563 28.21932724324942 28.765344274228237 22.02687297151778 51 20.51771227812653 29.18352368605487 27.319275205818567 22.97948883000003 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1430.0 1 1622.0 2 1814.0 3 7643.0 4 13472.0 5 9626.5 6 5781.0 7 5886.0 8 5991.0 9 6392.5 10 6794.0 11 7088.5 12 7383.0 13 7342.0 14 7301.0 15 7260.0 16 7219.0 17 6991.5 18 6764.0 19 6474.0 20 6184.0 21 6410.0 22 6636.0 23 7057.0 24 7478.0 25 8056.0 26 9919.5 27 11205.0 28 13109.5 29 15014.0 30 18447.0 31 21880.0 32 24573.0 33 27266.0 34 32785.5 35 38305.0 36 41134.0 37 43963.0 38 50346.0 39 56729.0 40 65016.0 41 73303.0 42 83674.5 43 94046.0 44 99470.5 45 104895.0 46 110683.0 47 116471.0 48 117916.5 49 119362.0 50 112624.5 51 105887.0 52 98367.5 53 90848.0 54 83033.0 55 75218.0 56 68190.5 57 61163.0 58 55785.0 59 50407.0 60 44940.5 61 39474.0 62 34430.0 63 29386.0 64 25225.0 65 21064.0 66 17303.0 67 13542.0 68 11403.5 69 9265.0 70 7881.5 71 6498.0 72 5598.0 73 4698.0 74 3947.5 75 2635.5 76 2074.0 77 1502.5 78 931.0 79 648.5 80 366.0 81 308.5 82 251.0 83 199.5 84 148.0 85 90.5 86 33.0 87 22.5 88 12.0 89 12.5 90 13.0 91 11.0 92 9.0 93 6.5 94 4.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1329812.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.337911927370566 #Duplication Level Percentage of deduplicated Percentage of total 1 76.53716496532084 20.15829110027252 2 6.393805424639284 3.3679896830978726 3 2.6078977831631884 2.06059746385611 4 1.561390417150731 1.6449505316462534 5 1.1643729785481904 1.5333576479806188 6 0.9462644576811914 1.4953577967844975 7 0.797293938217789 1.4699340267504588 8 0.6642394122345955 1.3995743310498532 9 0.5665214861089739 1.3428893705491114 >10 7.834527178077945 48.14255545773134 >50 0.8841536724447624 14.668002526008605 >100 0.039720268512512646 1.6538452254059433 >500 0.0017653452666455648 0.3133797249600588 >1k 5.884484222151883E-4 0.1739706930107151 >5k 2.9422421110759413E-4 0.575304420896013 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7424 0.5582744026975242 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04015605213368506 0.0 2 0.0 0.0 0.0 0.13625986229632459 0.0 3 0.0 0.0 0.0 0.24364346238415654 0.0 4 0.0 0.0 0.0 0.4468300782366229 0.0 5 0.0 0.0 0.0 0.7389766372991069 0.0 6 0.0 0.0 0.0 1.49239140570246 0.0 7 0.0 0.0 0.0 1.8122110493814163 0.0 8 0.0 0.0 0.0 2.57502564272243 0.0 9 0.0 0.0 0.0 2.965306374134088 0.0 10 0.0 0.0 0.0 3.50996983032188 0.0 11 0.0 0.0 0.0 3.9263444757604833 0.0 12 0.0 0.0 0.0 4.258872682755157 0.0 13 0.0 0.0 0.0 4.443410045931304 0.0 14 0.0 0.0 0.0 4.530114031156284 0.0 15 0.0 0.0 0.0 4.608997362033129 0.0 16 0.0 0.0 0.0 4.772403918749418 0.0 17 0.0 0.0 0.0 4.937389646055232 0.0 18 0.0 0.0 0.0 5.161331075370052 0.0 19 0.0 0.0 0.0 5.276760925604521 0.0 20 0.0 0.0 0.0 5.40031222458513 0.0 21 0.0 0.0 0.0 5.557326900343808 0.0 22 0.0 0.0 0.0 5.726222954823689 0.0 23 0.0 0.0 0.0 5.908429161415298 0.0 24 0.0 0.0 0.0 6.056720799631828 0.0 25 0.0 0.0 0.0 6.1823024607989705 0.0 26 0.0 0.0 0.0 6.3079593205656135 0.0 27 0.0 0.0 0.0 6.443316799667923 0.0 28 0.0 0.0 0.0 6.581306229752777 0.0 29 0.0 0.0 0.0 6.725612342195739 0.0 30 0.0 0.0 0.0 6.919549530309547 0.0 31 0.0 0.0 0.0 7.080850526239799 0.0 32 0.0 0.0 0.0 7.239895564185012 0.0 33 0.0 0.0 0.0 7.39683504134419 0.0 34 0.0 0.0 0.0 7.551217766120324 0.0 35 0.0 0.0 0.0 7.727558481950832 0.0 36 0.0 0.0 0.0 7.877053297759383 0.0 37 0.0 0.0 0.0 8.046776536833779 0.0 38 0.0 0.0 0.0 8.215296598316153 0.0 39 0.0 0.0 0.0 8.413444908002033 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATCGG 35 1.21212E-7 45.000004 2 CTACGAT 20 7.0336874E-4 45.0 19 CGTCGTT 20 7.0336874E-4 45.0 25 ACGTACT 20 7.0336874E-4 45.0 22 GTCGGTT 20 7.0336874E-4 45.0 33 TACGGGA 260 0.0 43.26923 4 CGTTTTT 5545 0.0 41.95672 1 GCGATAT 135 0.0 41.666664 9 GTTTGCG 100 0.0 40.500004 1 AATACGG 45 1.9286745E-8 40.0 2 ACGGGAT 320 0.0 38.671875 5 CGTATGG 175 0.0 38.571426 2 GGCGATA 540 0.0 38.333332 8 AACGTAC 30 1.1400184E-4 37.499996 37 ATTACGA 30 1.1400184E-4 37.499996 21 TCGTCGT 30 1.1400184E-4 37.499996 24 ACGGGAC 325 0.0 37.384617 5 TAGGGCG 605 0.0 37.190083 5 GCGATAA 85 0.0 37.058823 9 TAAGGGT 990 0.0 37.045452 4 >>END_MODULE