SRR1547083_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547083_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	678310
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4153	0.6122569326709026	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	914	0.13474664976190828	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	684	0.10083884949359438	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.2109376E-7	45.000004	1
TACGGGA	140	0.0	45.000004	4
TGATTCG	30	2.1641808E-6	45.000004	1
GCGATAC	35	1.2109376E-7	45.000004	9
GCGTATG	30	2.1641808E-6	45.000004	1
GCATATT	35	1.2109376E-7	45.000004	9
CAAACGA	20	7.03124E-4	45.0	44
TTAATCG	20	7.03124E-4	45.0	20
TTTACGG	40	6.8084773E-9	45.0	2
GATCCAA	20	7.03124E-4	45.0	33
TCTAGCG	25	3.88911E-5	45.0	1
ATCGTAG	20	7.03124E-4	45.0	1
AAACGAC	25	3.88911E-5	45.0	45
GTAGCAT	55	1.8189894E-12	45.0	29
CGCTATT	25	3.88911E-5	45.0	40
ACTACGG	45	3.8380676E-10	45.0	2
GCGATAA	40	6.8084773E-9	45.0	9
GGTTACG	20	7.03124E-4	45.0	1
CGATACT	20	7.03124E-4	45.0	10
TACGTAG	25	3.88911E-5	45.0	1