Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547083_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 678310 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4153 | 0.6122569326709026 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 914 | 0.13474664976190828 | No Hit |
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 684 | 0.10083884949359438 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAATACG | 35 | 1.2109376E-7 | 45.000004 | 1 |
TACGGGA | 140 | 0.0 | 45.000004 | 4 |
TGATTCG | 30 | 2.1641808E-6 | 45.000004 | 1 |
GCGATAC | 35 | 1.2109376E-7 | 45.000004 | 9 |
GCGTATG | 30 | 2.1641808E-6 | 45.000004 | 1 |
GCATATT | 35 | 1.2109376E-7 | 45.000004 | 9 |
CAAACGA | 20 | 7.03124E-4 | 45.0 | 44 |
TTAATCG | 20 | 7.03124E-4 | 45.0 | 20 |
TTTACGG | 40 | 6.8084773E-9 | 45.0 | 2 |
GATCCAA | 20 | 7.03124E-4 | 45.0 | 33 |
TCTAGCG | 25 | 3.88911E-5 | 45.0 | 1 |
ATCGTAG | 20 | 7.03124E-4 | 45.0 | 1 |
AAACGAC | 25 | 3.88911E-5 | 45.0 | 45 |
GTAGCAT | 55 | 1.8189894E-12 | 45.0 | 29 |
CGCTATT | 25 | 3.88911E-5 | 45.0 | 40 |
ACTACGG | 45 | 3.8380676E-10 | 45.0 | 2 |
GCGATAA | 40 | 6.8084773E-9 | 45.0 | 9 |
GGTTACG | 20 | 7.03124E-4 | 45.0 | 1 |
CGATACT | 20 | 7.03124E-4 | 45.0 | 10 |
TACGTAG | 25 | 3.88911E-5 | 45.0 | 1 |