SRR1547079_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547079_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	710035
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2366	0.3332230101333033	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1596	0.2247776518058969	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCATA	25	3.889293E-5	45.000004	37
GCAAACG	25	3.889293E-5	45.000004	1
CGTCTTA	25	3.889293E-5	45.000004	23
TCGATAG	35	1.2110468E-7	45.000004	1
CGCTCGA	25	3.889293E-5	45.000004	37
TACGACC	25	3.889293E-5	45.000004	11
CGGGCAA	25	3.889293E-5	45.000004	6
GTATCGG	35	1.2110468E-7	45.000004	2
GCTACGA	35	1.2110468E-7	45.000004	10
TATCGTC	35	1.2110468E-7	45.000004	33
TATCGGA	25	3.889293E-5	45.000004	20
GCCCGTT	25	3.889293E-5	45.000004	21
GTACGAC	25	3.889293E-5	45.000004	10
AGCCGAC	20	7.0314633E-4	45.0	27
CTCACGT	40	6.8084773E-9	45.0	45
TCGCAAG	20	7.0314633E-4	45.0	1
CGACGTG	20	7.0314633E-4	45.0	21
CGACGGT	45	3.8380676E-10	45.0	28
CTTCACG	20	7.0314633E-4	45.0	18
GCTATCC	20	7.0314633E-4	45.0	23